Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_008348.1 Length=168041 Score E Sequences producing significant alignments: (Bits) Value seq979 309 3e-79 >seq979 Length=3763 Score = 309 bits (342), Expect = 3e-79 Identities = 649/953 (68%), Gaps = 46/953 (5%) Strand=Plus/Plus Query 51244 CGTCGCCCAGGCCCTCGTGCATGGCGTTCAGTAGGTCGCCGTTGTCAGCGTCGATTTCCC 51303 ||| ||| || || |||||||| |||||||| | |||||||||||| ||||||||||||| Sbjct 450 CGTGGCCGAGACCTTCGTGCATCGCGTTCAGGATGTCGCCGTTGTCCGCGTCGATTTCCC 509 Query 51304 ACGCAAACAATCCCGCCAACCCGTT-CGCAAGCACGTACTGGCCCTTGGCGCGAACGGAT 51362 ||| |||| ||||||| | | | | | ||||||| | |||||| ||| || || Sbjct 510 ACGAGAACA-TCCCGCCGAGCTGCTGCTTGCGCACGTAGTCGCCCTTCGCGTTCACCGAG 568 Query 51363 CGAGCGTTGTCGAACGTGATCAGGTTGCCCGCGATCGGTTCGAAGCCGTACGCAGCCTCG 51422 || | | ||||||||||| || | || | | || | ||| |||||| |||||| Sbjct 569 CGCGGATCGTCGAACGTGAGGAGTTCACCGGTGCTCTTGTTGAACACGTACGGCGCCTCG 628 Query 51423 GCGATCAGATCGTAGTAGAACTCGTAGTCTTTGACGAACTCGTT---CGCG------ATC 51473 || || | ||||||| | |||||||| | |||| | | |||| || | ||| Sbjct 629 GCCGTCTGGTCGTAGTGGTACTCGTAGCCGTTGATGCCCGCGTTGTTCGGGCCGATCATC 688 Query 51474 T--GCC--GA--------TAGTCGACCACCCCATTTTCCCAGGTGCCTTCGATGGGTCCG 51521 | ||| || ||||||| | || |||||| || | | || || Sbjct 689 TCCGCCTTGAGCTTCTTGTAGTCGAGAATGCCGGCTTCCCACTGCCCCTTGTGCGGCCCC 748 Query 51522 CCGGCGACGCCGCTGAACCAGTT-CGGTTCGTAGTCGTAGCCGGTCACGTTCGACCAGCC 51580 ||| |||| ||||| || | || ||| ||||| | |||| |||||| Sbjct 749 TTCGCGGTGCCGGTGAACGGATTGCCGTCGGTA----TAGCCCGACACGCCGTTCCAGCC 804 Query 51581 GCGAGCGTACATCGCCACGCCGACGACGATCTTCT---GATTGCGCACGCCCTGTTCGAG 51637 ||| ||||| |||| |||||||||||| ||||| ||| | |||||||| | || Sbjct 805 GCGGGCGTATGCCGCCGCGCCGACGACGAGCTTCTTCGGATCG---ACGCCCTGCGCAAG 861 Query 51638 AAGCGACGACACGGCATAGTCGGTGGTGTACTTTTCGTCGGGGTTCCATTGGGGCGCGAA 51697 |||| | | | | |||||| |||||||| ||| || ||||| ||||||| Sbjct 862 CAGCGCCTTGATCGAGTTGTCGGTCGTGTACTTGGTGTCCGGTTTCCACGCGGGCGCGTG 921 Query 51698 CAGTGTGGTCTGGTAGCCCAGATCGGTGTTGGACCACGCACCCTTGAAATCGTAGTTCAT 51757 ||| | ||||||| ||||| || || | ||||||| | | | ||||| |||| Sbjct 922 CAGCGCCGTCTGGTGACCCAGCTCCGTCAGGCTGAACGCACCGTAGTAGTCGTACGTCAT 981 Query 51758 GAGGAAAATGTAATCCA---ACTGCGTCTGCGCCCGAGCGTAGTCGACGACTTGAATTTT 51814 | ||| ||||| |||| ||| ||| || || | |||| || || | || || Sbjct 982 GTCGAAGATGTAGTCCATGTACTTCGTG-GCTTCCTTG--TAGTTCACCACGTCGATCTT 1038 Query 51815 ATCGTAGCCCGCGCTGATGGCGCTGGTCAACAGGTACGAACGGTTCGTGGCGGCGCTCAA 51874 || | |||||||| ||| || |||| | ||| | | ||| | || || Sbjct 1039 GTCCTTGCCCGCGCCGATCGCCGACGTCAGCTCGTAGGTCTTGCCGGTGTCCGCCGACAC 1098 Query 51875 CTCGTCGAGCATGTCGCGCAGCTCGGTCAAAAGCGTCACGTACGTCGCACCATCGCGATC 51934 ||||||||| | ||||| || ||| |||||||| ||| ||| || || | Sbjct 1099 GCGGTCGAGCATCTGCCGCAGTTCCTTCATCAGCGTCACATACAGCGCGCCGTCCGTCTG 1158 Query 51935 GGGATCGCCCAGGTCGGGATTGGCGCCTTTGCCGCCCGGAAACTCCCAGTCGACGTCGAC 51994 |||| ||| | || || ||||| ||||||||||| || |||||||||| |||||| Sbjct 1159 CGGATTGCCGATCGCGCCGTTCGCGCCCTTGCCGCCCGGGAATTCCCAGTCGATGTCGAC 1218 Query 51995 TCCGTCGAAGAACTTCCAAGTCAGCAGAAACT-CGCGAACCGATTCGACGA--AGGTTGC 52051 ||||||||||||||||| || |||| |||| | || ||| ||||||| | |||| Sbjct 1219 ACCGTCGAAGAACTTCCAGGTGCGCAGCAACTGCTCG-GTCGAATCGACGAACACCTTGC 1277 Query 52052 GCGTTTGCTCGCGTCGTGCAGGAAGAAGAACGGATCGGACAGCGTCCAACCGCCGATCGA 52111 || ||| || ||||||||| |||||||||||||||||||||||| ||||||||||| Sbjct 1278 GC--TTGGCCGGGTCGTGCAGCTGGAAGAACGGATCGGACAGCGTCCAGCCGCCGATCGA 1335 Query 52112 GGGCAGAATCTTGAGCGAAGGATTGGCCCGTTTGGCCGCCATCAGCTGTCCAA 52164 ||||| |||||||| |||||| | || || ||||||| ||| |||| Sbjct 1336 CGGCAGGATCTTGAGGTCGGGATTGCGCTTCTTCGCGGCCATCATCTGGCCAA 1388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 537588503272520