Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18]
2,187 sequences; 412,924,424 total letters
Query= NC_008520.2
Length=132239
Score E
Sequences producing significant alignments: (Bits) Value
seq4 109 5e-19
seq1 84.2 2e-11
>seq4
Length=56582383
Score = 109 bits (120), Expect = 5e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246
|||||||| ||||| || || | || || || || |||||| |||| |||| |
Sbjct 31259796 ATGCAAATATTTGTGAAGACACTTACTGGGAAGACTATTACCTTGGAGGTGGAAAGCTCT 31259737
Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306
||| || ||| | || ||| ||| || || || || || ||||| |||||
Sbjct 31259736 GATACTATTGATAATGTGAAAGCAAAGATACAAGATAAGGAGGGTATTCCCCCAGATCAG 31259677
Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366
|| |||||||||| ||| ||||| || ||||| ||| | ||| |||| ||||| |||
Sbjct 31259676 CAGAGGCTTATTTTTGCTGGCAAGCAGTTGGAGGATGGTCGTACTCTGGCAGATTACAAT 31259617
Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGC 111414
|| || ||||||||||| || ||| | || | ||||| || ||||||
Sbjct 31259616 ATTCAGAAAGAATCTACCCTGCATCTTGTTCTTCGTCTCCGTGGTGGC 31259569
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246
||||| |||||||| || || | ||||| || || || || |||| |||
Sbjct 31287303 ATGCAGATTTTTGTGAAGACTCTTACCGGAAAGACAATAACTTTGGAGGTTGAAAGTTCT 31287244
Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306
||| | ||| | | || ||| ||| ||| |||||||| ||| |||| || ||
Sbjct 31287243 GATACAATTGACAACGTGAAAGCAAAGATTCAGGACAAAGAGGGCATTCCTCCAGACCAG 31287184
Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366
|| ||||| |||| |||||||| || ||||||||| ||| |||| |||||||||
Sbjct 31287183 CAGAGGCTAATTTTCGCGGGCAAGCAGTTGGAAGATGGCCGTACTCTGGCTGATTATAAT 31287124
Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413
|| || ||||||||||| || ||||| || ||| | || || |||||
Sbjct 31287123 ATCCAGAAAGAATCTACTCTGCATTTGGTTTTGAGGCTTCGAGGTGG 31287077
Score = 98.7 bits (108), Expect = 8e-16
Identities = 159/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246
|||||||| ||||| ||||| |||| |||||||| || ||| | || |||
Sbjct 31288443 ATGCAAATCTTTGTGAAAACATTGACTGGCAAAACTATCACCCTCGAGGTGGAGAGTTCT 31288384
Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306
||| | | | | | || ||| || ||| ||||| ||||| |||| ||||||
Sbjct 31288383 GATACCATAGACAACGTTAAAGCTAAGATTCAAGACAAGGAAGGTATTCCTCCCGATCAG 31288324
Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366
||||||||||| | ||| || ||||||||||||||| || | || ||||| ||
Sbjct 31288323 CAAAGGCTTATATTTGCTGGTAAACAATTGGAAGATGGCCGCACCCTTGCGGATTACAAC 31288264
Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111415
|| ||||| ||||| || || || | ||| |||| || | |||||||
Sbjct 31288263 ATCCAAAAGGAATCCACCCTTCACCTTGTGCTGCGATTGAGAGGTGGCA 31288215
Score = 96.9 bits (106), Expect = 3e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246
|||||||| ||||| || || | ||||| || || |||||| |||| |||| |
Sbjct 31287075 ATGCAAATATTTGTGAAGACTCTTACCGGGAAGACTATTACCTTGGAGGTGGAAAGCTCT 31287016
Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306
||| | ||| | || ||| || || || || || || |||| || ||
Sbjct 31287015 GATACGATTGATAACGTGAAAGCGAAGATACAGGATAAGGAGGGTATTCCACCAGACCAG 31286956
Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366
||||||||||||| ||| ||||| || ||||| ||| | ||| |||| ||||| |||
Sbjct 31286955 CAAAGGCTTATTTTTGCTGGCAAGCAGTTGGAGGATGGTCGTACTTTGGCAGATTACAAT 31286896
Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGC 111414
|| || ||||||||||| || ||| | || | || || || ||||||
Sbjct 31286895 ATTCAGAAAGAATCTACCCTGCATCTTGTTCTTCGCCTCCGTGGTGGC 31286848
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246
|||||||||||||| || || | ||||| ||||| ||||| |||| ||
Sbjct 31287759 ATGCAAATTTTTGTAAAGACCCTTACCGGAAAAACTATTACTTTGGAGGTTGAGAGTTCA 31287700
Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306
||| || ||| | || ||| || ||| || || |||||| | || |||||
Sbjct 31287699 GATACTATTGATAATGTGAAAGCTAAGATTCAGGATAAGGAAGGCATCCCTCCTGATCAG 31287640
Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366
|| || ||||| | ||| || |||||| | |||||| | || | || |||||||||
Sbjct 31287639 CAGAGACTTATCTTTGCAGGGAAACAACTTGAAGATGGAAGGACCCTTGCTGATTATAAT 31287580
Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413
|| ||||| ||||| || || ||||| || ||||| || || |||||
Sbjct 31287579 ATCCAAAAGGAATCCACTCTGCATTTGGTTTTGCGGCTTCGTGGTGG 31287533
Score = 87.8 bits (96), Expect = 2e-12
Identities = 107/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 111270 AAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAA 111329
||||||| || ||||| ||| |||| || || || || || |||| ||| || ||
Sbjct 31259941 AAAAATTCAGGATAAAGAGGGCATTCCTCCTGACCAGCAGAGACTAATTTTTGCTGGAAA 31259882
Query 111330 ACAATTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACA 111389
|| ||||| ||| | ||| |||||||||||||||| || || |||||||| | ||
Sbjct 31259881 GCAGTTGGAGGATGGTCGTACTTTGGCCGATTATAATATCCAGAAGGAATCTACTTTGCA 31259822
Query 111390 TTTAGTGTTGCGTCTGCGCGGTGGCA 111415
||| || ||| | || || |||||||
Sbjct 31259821 TTTGGTTTTGAGGCTTCGTGGTGGCA 31259796
>seq1
Length=52991155
Score = 84.2 bits (92), Expect = 2e-11
Identities = 156/229 (68%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246
||||| ||||| || ||||| ||||||||||||| || ||| | || ||| | |
Sbjct 28610364 ATGCAGATTTTCGTGAAAACCTTGACCGGCAAAACAATAACCCTAGAGGTAGAATCATCC 28610423
Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306
|| | | | | | || ||| ||||| ||||||||||| |||| || |||
Sbjct 28610424 GACACAATCGACAACGTCAAAGCCAAAATCCAAGACAAAGAAGGAATTCCACCTGACCAA 28610483
Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366
||| | || || | || || ||||| | ||||| || |||| | || ||||| |||
Sbjct 28610484 CAACGTCTCATCTTCGCCGGAAAACAGCTAGAAGACGGTAGAACTCTTGCGGATTACAAT 28610543
Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111415
|| || ||||| || || || || | || | ||||| || |||||||
Sbjct 28610544 ATCCAGAAAGAGTCCACGCTTCACCTTGTTCTCCGTCTCCGTGGTGGCA 28610592
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 423028724265400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |