Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1 107 4e-18 seq8 93.3 8e-14 seq276 87.8 3e-12 seq7 87.8 3e-12 >seq1 Length=52991155 Score = 107 bits (118), Expect = 4e-18 Identities = 176/254 (69%), Gaps = 0/254 (0%) Strand=Plus/Plus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || ||||||||||| ||||| |||||||| ||| ||| || || ||| || || ||| Sbjct 19457094 CTCGCCTTCTTCGCTGCCTCCGACGGCATCGTCCTTGAAAATCTCGCCGGTAGATTTATG 19457153 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 ||||| | || || ||| || || ||||||||| |||||||| || || || ||| Sbjct 19457154 AAAGAAATCCAAGTCTCTGAAGCACGTGCCTTCTACGGTTTCCAGATTGCAATTGAAAAC 19457213 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGT 42602 | ||||||||| |||| | || ||| | ||||| || ||| ||| || Sbjct 19457214 ATCCACTCTGAGATGTATTCTCTTCTCCTCGAAACGTATATAAGCGATTCCGCTGAAAAG 19457273 Query 42603 AACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCG 42662 || | | || | || || || || || || || ||| |||||| || || |||||| Sbjct 19457274 AATCGCTTATTTCATGCAATTGAAACAATTCCATGTATCGCGAAGAAAGCTGATTGGGCG 19457333 Query 42663 CTCAACTGGATCGA 42676 | || |||||||| Sbjct 19457334 ATGAAATGGATCGA 19457347 >seq8 Length=45569985 Score = 93.3 bits (102), Expect = 8e-14 Identities = 108/143 (76%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 42418 ACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGT 42477 |||| || ||||||||||||||||| ||||| || ||| || || || ||| || | Sbjct 25026002 ACATCCTCGCCTTCTTCGCCGCCTCCGACGGTATCGTCCTCGAAAATCTCGCCGGAAGAT 25025943 Query 42478 TCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGC-TTCTACGGCTTCCAGATAGCCATA 42536 |||||||||| || || || ||| ||||| ||| |||||||| || || || || || Sbjct 25025942 TCATGAAAGAAGTTCAAATCTCTGAAGCGCG-TGCTTTCTACGGGTTTCAAATCGCTATT 25025884 Query 42537 GAGAACGTGCACTCTGAGGTGTA 42559 || ||| | ||||| ||| |||| Sbjct 25025883 GAAAACATCCACTCAGAGATGTA 25025861 >seq276 Length=24472 Score = 87.8 bits (96), Expect = 3e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || ||||||||||||||||| ||||| || ||| ||| || || ||| || |||||| Sbjct 22583 CTTGCCTTCTTCGCCGCCTCAGACGGAATTGTCCTTGAAAATCTTGCCGGAAGATTCATG 22642 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 ||||| || || || || || || |||||| || ||||| || || || || ||| Sbjct 22643 AAAGAAGTCCAAATCTCCGAAGCACGTGCCTTCTATGGTTTCCAAATTGCAATTGAAAAC 22702 Query 42543 GTGCACTCTGAGGTGTACGCC 42563 | || |||||| ||||| || Sbjct 22703 ATCCATTCTGAGATGTACTCC 22723 >seq7 Length=49172423 Score = 87.8 bits (96), Expect = 3e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || ||||||||||||||||| ||||| || ||| ||| || || ||| || |||||| Sbjct 10197505 CTTGCCTTCTTCGCCGCCTCAGACGGAATTGTCCTTGAAAATCTTGCCGGAAGATTCATG 10197446 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 ||||| || || || || || || |||||| || ||||| || || || || ||| Sbjct 10197445 AAAGAAGTCCAAATCTCCGAAGCACGTGCCTTCTATGGTTTCCAAATTGCAATTGAAAAC 10197386 Query 42543 GTGCACTCTGAGGTGTACGCC 42563 | || |||||| ||||| || Sbjct 10197385 ATCCATTCTGAGATGTACTCC 10197365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944313384127120