Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_009235.2 Length=48674 Score E Sequences producing significant alignments: (Bits) Value seq835 145 2e-30 >seq835 Length=5464 Score = 145 bits (160), Expect = 2e-30 Identities = 332/486 (68%), Gaps = 24/486 (5%) Strand=Plus/Minus Query 23941 GCGTTTATTTGCGAGGGGGACACGACCACGCATGGGGGGCGTGTGGTCGGCTGTAACGTC 24000 ||||| ||| |||| || || ||||| ||||||| || || || ||| || | | || Sbjct 1133 GCGTTCATTCGCGAAGGCGATACGACGTCGCATGGTGGACGCGTACTCGCTTGCA-CATC 1075 Query 24001 G-CTAACACG--GTTCATGGAAGGGCAATCGCATTGCTTGGCGACATGGTGACGTGTCCG 24057 | || | | |||| || | | |||| | || |||||||||||| | |||||| Sbjct 1074 AACGAATATGATGTTC--GGCAAACCCGTCGCGCTCCTGGGCGACATGGTGGCCTGTCCG 1017 Query 24058 CGGTGTGGTGGGATTTACCCGATCGTCAGCGTAAAGCGCGAGTTGAACATGACGTTTGGT 24117 || || || | || ||||||||| ||| ||| | ||| | |||||||||||| Sbjct 1016 AAATGCGGCGGCGTCTATCCGATCGTCGACGTGAAG-GTGAGCAG--CATGACGTTTGGC 960 Query 24118 GACAGGCCGATTGCTACAGACGGAGACAAGACCGCGTGTGGGGCAACGCTTATCGCGTCG 24177 | | ||||| | || || || || ||||||||||| || || || | | || ||||| Sbjct 959 GGCCGGCCGGTCGCGACGGAAGGCGACAAGACCGCCTGCGGTGCGTCATTGATTGCGTCA 900 Query 24178 CAAGGCTTCGC-CACGGTTGCCCCTACATCAGGGGCCGCTGGCGGCAATTCGATCGGCGG 24236 | |||| ||| |||| | | | ||||||||||| ||||||| |||| || Sbjct 899 CTGGGCTCCGCACACG-TCGAGCAGGTGTCAGGGGCCGCCGGCGGCA------TCGGTGG 847 Query 24237 TGGGAAGAGCGTCGTCCCGCAGTCGATGTCACGAGGGCCGGACAATCTATACCGTGGGCG 24296 || ||||||||||| |||||| | | |||| | | || | | | ||||| ||||| Sbjct 846 CGGAAAGAGCGTCGTGCCGCAGCAG--GACACG-GCGTCGACCGACCGCTACCGCGGGCG 790 Query 24297 CTTCCAGGTATTTGACGAGACGACTGGAAAACCGATCGCGAACCATCCCTAC--GTTCTG 24354 || || || | ||| |||| || | || | |||||||||| ||| |||| Sbjct 789 ATTTCAAGTCCTGGACAGCGCGACCGGGAGTCCCGTTCCGAACCATCCGTACTCGTTC-- 732 Query 24355 CAAACAGCGGACGGCCGGACAATATCCGGCCAGACCGACGCCGACGGCTATACGCAGTGG 24414 || || ||| ||| || || ||||| ||||||||| | | |||| ||||||||| Sbjct 731 CAGACGCCGGGTGGCGCCACGATCTCCGGGCAGACCGACTCGCAAGGCTTCACGCAGTGG 672 Query 24415 CACGAG 24420 |||||| Sbjct 671 CACGAG 666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155631158056584