Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_009236.1 Length=36690 Score E Sequences producing significant alignments: (Bits) Value seq835 156 1e-33 >seq835 Length=5464 Score = 156 bits (172), Expect = 1e-33 Identities = 250/355 (70%), Gaps = 7/355 (2%) Strand=Plus/Plus Query 8907 TGGAAGCGGCCGCGATACGGTTCATTCGGCGCCGAGCGCGCCTGCGCGATGACGCTCTTT 8966 || || || ||||| || | || ||| ||||| | | ||||| | |||||||||| Sbjct 784 TGAAATCGCCCGCGGTAGCGGTCGGTCGACGCCGTGTCCTGCTGCGGCACGACGCTCTTT 843 Query 8967 CCGCCGCCAATGGGGCTACCTTGGCCC--GCCGTGGGCGCAACCGTTGCGGTGCCTTGCG 9024 ||||| || ||| || | ||||| | | || | || ||||| ||| | | Sbjct 844 CCGCCACCGATGCCGCCGGC--GGCCCCTGACACCTGCTCGACGTGTGCGGAGCCCAGTG 901 Query 9025 AAGCGATCAGCGTCGCACCGCATGCCGTCTTGTCGCCATCGGTCGCGACCGGCCGGTCGC 9084 | || |||| | ||||||||| || ||||||||||| || ||||||||||||||| ||| Sbjct 902 ACGCAATCAATGACGCACCGCAGGCGGTCTTGTCGCCTTCCGTCGCGACCGGCCGGCCGC 961 Query 9085 CGAACGTCATGTTGAGTCCGCTTTTCACGCTCACGATCGGATAGATTCCGCCGCAGCGCG 9144 | ||||||||| || || | |||||| ||||||||||||| |||||||| || Sbjct 962 CAAACGTCATGCTG-CTCACC--TTCACGTCGACGATCGGATAGACGCCGCCGCATTTCG 1018 Query 9145 GGCACGTCACCATATCGCCGAGCAGCGCAATTGCCTTGCCGTAAACGAGATTGGCCGTGT 9204 | || | |||||| ||||| || ||||| | | |||||| | | | ||| | | Sbjct 1019 GACAGGCCACCATGTCGCCCAGGAGCGCGACGGGTTTGCCGAACATCATATTCGTTGATG 1078 Query 9205 TACAGCCGACGACACGGCCGCCGTGCGTCGTCGTGTCGCCTTCGCAGATGAATGC 9259 | || ||| || || || || |||| |||||| |||||||||| ||||| || Sbjct 1079 TGCAAGCGAGTACGCGTCCACCATGCGACGTCGTATCGCCTTCGCGAATGAACGC 1133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117283353998888