Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq1 98.7 8e-16 seq4 95.1 1e-14 seq7 84.2 2e-11 >seq1 Length=52991155 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | || || ||| || ||||||||||| ||||| ||||| || || ||||| || Sbjct 28610818 CCACCGCGCAACCTCAGAACTAGATGAAGCGTACTCTCTTTCTGGATATTATAATCCGCA 28610759 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || | || ||||| ||||| || ||||| |||| || ||||||||| || Sbjct 28610758 AGAGTTCTTCCATCTTCCAACTGCTTCCCTGCAAAGATCAATCGTTGCTGATCCGGTGGA 28610699 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCAT 34080 | || || ||||| ||| || ||| | | | | |||| |||||| | Sbjct 28610698 ATGCCTTCCTTGTCTTGAATCTTCGCCTTCACGTTGTCGATTGTGTCAGAAGATTCAACT 28610639 Query 34081 TCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || | ||||| ||||| || ||||| ||||| |||||||||||||| Sbjct 28610638 TCCAGGGTTATGGTTTTCCCTGTTAGGGTTTTGACAAAGATTTGCAT 28610592 >seq4 Length=56582383 Score = 95.1 bits (104), Expect = 1e-14 Identities = 91/114 (80%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || ||||||| | ||||||| |||||| ||| |||||| |||||||||||||| ||| Sbjct 31306226 CCACCTCTCAATCTAAGCACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATC-GCC 31306284 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 || ||| ||| |||| ||||||||||| ||||| || || || | || ||||| Sbjct 31306285 AAGTGTGCGCCCGTCTTCCAATTGCTTACCGGCGAAGATAAGCCTTTGTTGATC 31306338 Score = 89.7 bits (98), Expect = 4e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 ||||||| |||| |||||| ||| |||||| |||||||||||||| || | ||| Sbjct 31287770 AGCCGCAAAACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATCAGCGAGCGTGCGC 31287829 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 |||| ||||||||||| ||||| || || || | ||||||||| Sbjct 31287830 CCGTCTTCCAATTGCTTACCGGCGAAGATAAGCCTCTGCTGATC 31287873 >seq7 Length=49172423 Score = 84.2 bits (92), Expect = 2e-11 Identities = 83/105 (79%), Gaps = 2/105 (2%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT-CG 33968 || || ||||||| || || ||| |||||| || |||||||||||||| || || || Sbjct 47989839 AGACGGAGCACCAAGTGGAGTGTGGACTCCTTTTGGATGTTGTAATCTGC-AAGGGTACG 47989781 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | |||| |||| |||||||||||||| || || |||||||| || Sbjct 47989780 CCCGTCTTCCAGCTGCTTGCCGGCAAAAATTAGACGCTGCTGGTC 47989736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397051816673974