Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq5 176 1e-38 seq1 168 2e-36 seq8 167 6e-36 seq4 131 4e-25 seq6 129 1e-24 >seq5 Length=43630510 Score = 176 bits (194), Expect = 1e-38 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || || |||| ||| ||| || ||||| || ||||||||| Sbjct 14677268 CCACCACGGAGACGGAGAACAAGGTGAAGAGTGGATTCCTTCTGGATGTTGTAGTCGGCG 14677209 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| |||||||| | |||||||| |||||||| ||||| ||||| |||| Sbjct 14677208 AGAGTGCGGCCGTCTTCCAGCTGTTTTCCGGCGAAGATGAGACGTTGTTGGTCCGGTGGG 14677149 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 ||||||||||| || ||||| || |||||||| || || || | || ||||| ||| Sbjct 14677148 ATTCCTTCTTTGTCTTGGATCTTGGCTTTCACATTGTCGATGGTGTCTGAAGATTCAACT 14677089 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || || ||||||||||| || || || ||||| |||||||| Sbjct 14677088 TCGAGGGTTATTGTCTTCCCGGTTAGGGTTTTCACGAAGATCTGCAT 14677042 >seq1 Length=52991155 Score = 168 bits (186), Expect = 2e-36 Identities = 182/240 (76%), Gaps = 1/240 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| ||||| | || || || |||| |||| ||||| |||||||| || | Sbjct 28610594 CATG-CCACCACGGAGACGGAGAACAAGGTGAAGCGTGGACTCTTTCTGGATATTGTAAT 28610536 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | || || || | |||||||||| |||||||| |||||||| ||||| ||||| | Sbjct 28610535 CCGCAAGAGTTCTACCGTCTTCTAGCTGTTTTCCGGCGAAGATGAGACGTTGTTGGTCAG 28610476 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||| ||||||||||| || |||||||| ||||| ||||| || || | ||| |||| Sbjct 28610475 GTGGAATTCCTTCTTTGTCTTGGATTTTGGCTTTGACGTTGTCGATTGTGTCGGATGATT 28610416 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATGTTAT 288481 |||| || || || || || || ||||||| || || ||||| |||||||| ||| ||| Sbjct 28610415 CTACCTCTAGGGTTATTGTTTTGCCGGTCAAGGTTTTCACGAAAATCTGCATGATGATAT 28610356 Score = 136 bits (150), Expect = 9e-27 Identities = 169/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || || || || ||||||| ||| ||||| || |||||||| || ||| Sbjct 28611046 CCACCACGTAGCCTGAGAACAAGATGAAGCGTAGACTCTTTCTGAATATTATAATCAGCG 28610987 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | || || || | ||||||||| || ||||||| ||||| ||| ||| Sbjct 28610986 AGAGTCCTCCCATCCTCAAGTTGTTTTCCAGCAAAGATCAATCGCTGCTGATCCGGTGGA 28610927 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCG---CTCGATTCT 288423 || || || |||||||| || || || |||||||| || |||| ||| ||| || Sbjct 28610926 ATGCCCTCCTTATCCTGAATCTTGGCCTTCACGTTATCAATAGTATCAGAACTC---TCC 28610870 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || ||||||||||||| ||||| || ||||||||||| Sbjct 28610869 ACCTCTAGAGTAATTGTCTTCCCGGTCAACGTCTTCACAAATATCTGCAT 28610820 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| | || || || ||||||| ||| || ||||| ||||||||||| || || Sbjct 28610818 CCACCGCGCAACCTCAGAACTAGATGAAGCGTACTCTCTTTCTGGATATTATAATCCGCA 28610759 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | ||| ||||| || || || ||||| ||||||| || || ||| ||| Sbjct 28610758 AGAGTTCTTCCATCTTCCAACTGCTTCCCTGCAAAGATCAATCGTTGCTGATCCGGTGGA 28610699 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || || || || ||||| |||||||| || || | || ||||| ||| Sbjct 28610698 ATGCCTTCCTTGTCTTGAATCTTCGCCTTCACGTTGTCGATTGTGTCAGAAGATTCAACT 28610639 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || ||||| || || || ||||| || || ||||| Sbjct 28610638 TCCAGGGTTATGGTTTTCCCTGTTAGGGTTTTGACAAAGATTTGCAT 28610592 >seq8 Length=45569985 Score = 167 bits (184), Expect = 6e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || || |||| ||| ||| || ||||| || ||||||||| Sbjct 36460085 CCACCACGAAGACGTAGGACAAGGTGAAGAGTGGATTCCTTCTGGATGTTGTAGTCGGCG 36460026 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || |||||||||||||| || || ||||| |||||||| ||||| || || | ||| Sbjct 36460025 AGAGTGCGTCCGTCTTCCAACTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCAGGTGGA 36459966 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| ||||||||||| || ||||| || || || || | ||| || || || Sbjct 36459965 ATTCCTTCCTTATCCTGGATCTTGGCTTTGACATTGTCGATTGTGTCGGAAGACTCAACC 36459906 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || ||||||||||| || || || || ||||| |||||||| Sbjct 36459905 TCGAGGGTTATCGTCTTCCCTGTTAGGGTTTTCACGAAGATCTGCAT 36459859 Score = 116 bits (128), Expect = 9e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || ||||||| || || || ||||| || || || || Sbjct 33775198 CCACCACGTAGACGGAGGACAAGATGAAGGGTAGACTCCTTCTGGATGTTGTAATCAGCA 33775139 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| ||||| || | || ||||| |||||||||| | ||| || || Sbjct 33775138 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCAGGGGA 33775079 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| ||||||||||| || ||||| ||||| || || | ||| ||| || Sbjct 33775078 ATTCCTTCCTTATCCTGGATCTTGGCTTTGACGTTGTCGATGGTGTCGGAGCTTTCGACC 33775019 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||| | ||||| ||||| || ||||| ||||| |||||||| Sbjct 33775018 TCAAGGGTGGTGGTCTTGCCGGTGAGGGTCTTAACGAAGATCTGCAT 33774972 Score = 114 bits (126), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || | ||| | ||| ||| |||||||| ||||| || || Sbjct 6167939 CCACCACGGAGACGGAGCACCAAATGGAGAGTGGATTCCTTTTGGATGTTATAATCAGCA 6167880 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || || || | || || || || || ||||| ||||| || |||| Sbjct 6167879 AGGGTACGCCCATCCTCCAGCTGCTTGCCAGCAAAAATCAGTCGCTGCTGGTCTGGTGGG 6167820 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT--A 288424 |||||||| || || || ||||| || || || || ||||| | || || | ||| | Sbjct 6167819 ATTCCTTCCTTGTCTTGAATTTTTGCCTTAACATTGTCTATGGTAT--CTGAACTCTCAA 6167762 Query 288425 CTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||||| ||||| ||||| || || || ||||| ||||| || ||||| Sbjct 6167761 CTTCGAGAGTGATGGTCTTGCCAGTGAGGGTCTTAACGAAGATTTGCAT 6167713 Score = 105 bits (116), Expect = 2e-17 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || ||||| || || || | ||| || || ||||| || || || ||| Sbjct 6169271 TCCTTCTGAATGTTGTAGTCAGCAAGGGTCCTTCCATCCTCCAATTGCTTCCCAGCAAAG 6169212 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| | ||| ||| |||||||||||| || ||||||||||| || ||||| || Sbjct 6169211 ATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTGTCCTGGATTTTTGCCTTCACATTA 6169152 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || |||||| || | ||||| ||||| ||||||| ||||| || Sbjct 6169151 TCAATTGTGTCTGAACTTTCTACCTCTAAGGTGATGGTCTTACCGGTCAACGTCTTTACA 6169092 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 6169091 AAGATCTGCAT 6169081 Score = 100 bits (110), Expect = 7e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 288261 AAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTC 288320 ||| || || |||| ||| ||||| || || || || || || | || || || || Sbjct 6169065 AAGGACAAGGTGAAGGGTGGACTCTTTCTGAATGTTGTAATCAGCCAAAGTCCGGCCATC 6169006 Query 288321 TTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATC 288380 ||| | || || || || ||||||| | ||| ||| |||||||||||| || || Sbjct 6169005 TTCAAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTGTC 6168946 Query 288381 CTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGT 288440 ||||||||| || ||||| || || || | || |||||| || | ||||| || Sbjct 6168945 CTGGATTTTTGCCTTCACATTATCAATTGTGTCTGAACTTTCTACCTCTAAGGTGATGGT 6168886 Query 288441 CTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| ||||||| ||||| || || |||||||| Sbjct 6168885 CTTACCGGTCAACGTCTTCACAAAGATCTGCAT 6168853 >seq4 Length=56582383 Score = 131 bits (144), Expect = 4e-25 Identities = 159/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 288258 TCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCC 288317 |||||| || | ||||| || ||| || ||||| ||||| || || || || | ||| Sbjct 31260265 TCTAAGCACCAAATGAAGGGTAGATTCCTTCTGGATGTTATAATCAGCTAGGGTCCTTCC 31260324 Query 288318 GTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTT 288377 ||||||| |||||| ||||| ||||| || | ||| ||| | ||||| || ||||| Sbjct 31260325 ATCTTCTAGTTGTTTCCCTGCAAAGATAAGCCTCTGCTGATCAGGAGGGATACCCTCTTT 31260384 Query 288378 ATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGAT 288437 ||||| || || || || || || || || | ||| ||||| || || | ||||| Sbjct 31260385 GTCCTGTATCTTGGCCTTGACATTATCAATGGTATCCGAGGATTCAACCTCTAAGGTGAT 31260444 Query 288438 CGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || || |||| |||||| ||||||||||||||| Sbjct 31260445 GGTTTTTCCAGTCAAAGTCTTTACGAATATCTGCATT 31260481 Score = 123 bits (136), Expect = 6e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| | | |||||| || ||||||| || ||| || ||||| ||||| || || Sbjct 31287988 TCCACCTCTTAATCTAAGCACCAGATGAAGGGTAGATTCCTTCTGGATGTTATAATCAGC 31288047 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || || | ||| || || | ||||| ||||| ||||| || | ||| ||| | || Sbjct 31288048 TAGGGTTCTTCCATCCTCGAGCTGTTTCCCTGCAAAGATAAGCCTCTGCTGATCAGGAGG 31288107 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||| || ||||| || ||||| || || || || || || || | ||| ||||| || Sbjct 31288108 GATACCCTCTTTGTCTTGGATCTTGGCCTTGACATTATCAATTGTATCAGATGATTCAAC 31288167 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| || || ||||||| ||||| || ||||||||||| Sbjct 31288168 CTCAAGGGTGATTGTTTTTCCGGTCAATGTCTTCACAAATATCTGCAT 31288215 Score = 123 bits (136), Expect = 6e-23 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || | ||| | ||| ||| |||||||| ||||| || || Sbjct 35101802 CCACCACGGAGACGGAGCACCAAATGGAGGGTGGATTCCTTTTGGATGTTATAATCAGCA 35101861 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || || || || || || || || || ||||||||||| || |||| Sbjct 35101862 AGGGTACGCCCATCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCTGGTGGG 35101921 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT--A 288424 |||||||| || || || ||||| || || || || ||||| | || || | ||| | Sbjct 35101922 ATTCCTTCCTTGTCTTGAATTTTTGCCTTAACATTGTCTATGGTAT--CTGAACTCTCAA 35101979 Query 288425 CTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||||| ||||| ||||| || || || ||||| ||||| || ||||| Sbjct 35101980 CTTCGAGAGTGATGGTCTTGCCAGTGAGGGTCTTAACGAAGATTTGCAT 35102028 Score = 118 bits (130), Expect = 3e-21 Identities = 168/233 (72%), Gaps = 10/233 (4%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | | || | ||||| ||| || ||||| || || || || ||| Sbjct 31287761 CCACCACGAAGCCGCAAAACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATCAGCG 31287820 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363 |||||||| |||||||| ||||| || || |||||||| || | ||| || |||| Sbjct 31287821 AGCGTGCGCCCGTCTTCCAATTGCTTACCGGCGAAGATAAGCCTCTGCTG---ATCTGGA 31287877 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| || || ||||| || || || |||||||| || || |||| || || | ||| Sbjct 31287878 GGGATACCCTCCTTATCTTGAATCTTAGCTTTCACATTATCAATAGTAT--CTGAACTCT 31287935 Query 288424 --ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || | || || ||||| || |||| |||||| || || ||||||||| Sbjct 31287936 CCACCTCCAAAGTAATAGTCTTTCCAGTCAAAGTCTTTACAAAAATCTGCATT 31287988 Score = 118 bits (130), Expect = 3e-21 Identities = 166/231 (72%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| | | |||||| || | ||||| ||| || ||||| || || || ||| | Sbjct 31306225 TCCACCTCTCAATCTAAGCACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATCGCC 31306284 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || ||||| |||||||| ||||| || || |||||||| || | |||||| || Sbjct 31306285 AAGTGTGCGCCCGTCTTCCAATTGCTTACCGGCGAAGATAAGCCTTTGTTGATCGGGAGG 31306344 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT-- 288423 ||| || || || || || || || |||||||| || || |||| ||| | | ||| Sbjct 31306345 GATACCCTCCTTGTCTTGAATCTTAGCTTTCACATTATCAATAGTATC--TGAACTCTCA 31306402 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || | || || ||||| || |||| |||||| || |||||||||||| Sbjct 31306403 ACCTCCAAAGTAATAGTCTTTCCAGTCAAAGTCTTAACAAATATCTGCATT 31306453 Score = 114 bits (126), Expect = 3e-20 Identities = 143/194 (74%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| |||||||||||||| || || || || | ||| ||||| | |||||| ||||| || Sbjct 31287568 TTCCTTTTGGATATTATAATCAGCAAGGGTCCTTCCATCTTCAAGTTGTTTCCCTGCAAA 31287627 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||| || | ||| ||| | ||||| ||||| |||||||| || || |||||||| || Sbjct 31287628 GATAAGTCTCTGCTGATCAGGAGGGATGCCTTCCTTATCCTGAATCTTAGCTTTCACATT 31287687 Query 288402 TTCTATAGAATCGCTCGATTCT--ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || |||| || || | ||| || || | || || || || ||||| || ||||| Sbjct 31287688 ATCAATAGTAT--CTGAACTCTCAACCTCCAAAGTAATAGTTTTTCCGGTAAGGGTCTTT 31287745 Query 288460 ACGAATATCTGCAT 288473 || || || ||||| Sbjct 31287746 ACAAAAATTTGCAT 31287759 Score = 114 bits (126), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || | ||| | ||| || || ||||| ||||| || || Sbjct 36294097 CCACCACGGAGACGGAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTATAATCAGCA 36294038 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || || || | || ||||| || || ||||||||||| || | |||| Sbjct 36294037 AGGGTACGCCCATCCTCCAGCTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCAGGTGGG 36293978 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT--A 288424 |||||||| || || || || || || || || || ||||| | || || | ||| | Sbjct 36293977 ATTCCTTCCTTGTCTTGAATCTTTGCCTTAACATTGTCTATGGTAT--CTGAACTCTCAA 36293920 Query 288425 CTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||||| ||||| ||||| || || || ||||| ||||| || ||||| Sbjct 36293919 CTTCGAGAGTGATGGTCTTTCCAGTGAGGGTCTTAACGAAGATTTGCAT 36293871 Score = 105 bits (116), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | ||| || ||||| | || |||||| || ||||| || || || Sbjct 31286849 CCACCACGGAGGCGAAGAACAAGATGCAGGGTAGATTCTTTCTGAATATTGTAATCTGCC 31286908 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || || || || || || || || || || || || || | || || ||| Sbjct 31286909 AAAGTACGACCATCCTCCAACTGCTTGCCAGCAAAAATAAGCCTTTGCTGGTCTGGTGGA 31286968 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423 || || || |||||||| || |||||||||||||| || || | ||| ||| ||| Sbjct 31286969 ATACCCTCCTTATCCTGTATCTTCGCTTTCACGTTATCAATCGTATCAGAGCT---TTCC 31287025 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || | || || ||||||||||| |||||||| || ||||| ||||| Sbjct 31287026 ACCTCCAAGGTAATAGTCTTCCCGGTAAGAGTCTTCACAAATATTTGCAT 31287075 Score = 105 bits (116), Expect = 2e-17 Identities = 141/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||| ||||||||||| || || || || || || ||||| || || || || ||||| Sbjct 31287112 TTCTTTCTGGATATTATAATCAGCCAGAGTACGGCCATCTTCCAACTGCTTGCCCGCGAA 31287171 Query 288342 GATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 || || | ||| || ||| || || || ||||| ||||| || || |||||||| Sbjct 31287172 AATTAGCCTCTGCTG---GTCTGGAGGAATGCCCTCTTTGTCCTGAATCTTTGCTTTCAC 31287228 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 ||| || || | ||| ||| || || | || || ||||| ||||| |||||||| Sbjct 31287229 GTTGTCAATTGTATCAGAACTTTCAACCTCCAAAGTTATTGTCTTTCCGGTAAGAGTCTT 31287288 Query 288459 GACGAATATCTGCAT 288473 || || |||||||| Sbjct 31287289 CACAAAAATCTGCAT 31287303 Score = 105 bits (116), Expect = 2e-17 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || ||||| || || || | ||| || || ||||| || || || ||| Sbjct 35100507 TCCTTCTGAATGTTGTAGTCAGCAAGGGTCCTTCCATCCTCCAATTGCTTCCCAGCAAAG 35100566 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| | ||| ||| |||||||||||| || ||||||||||| || ||||| || Sbjct 35100567 ATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTGTCCTGGATTTTTGCCTTCACATTA 35100626 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || |||||| || | ||||| ||||| ||||||| ||||| || Sbjct 35100627 TCAATTGTGTCTGAACTTTCTACCTCTAAGGTGATGGTCTTACCGGTCAACGTCTTCACA 35100686 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 35100687 AAGATCTGCAT 35100697 Score = 105 bits (116), Expect = 2e-17 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || ||||| || || || | ||| || || ||||| || || || ||| Sbjct 35108899 TCCTTCTGAATGTTGTAGTCAGCAAGGGTCCTTCCATCCTCCAATTGCTTCCCAGCAAAG 35108958 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| | ||| ||| |||||||||||| || ||||||||||| || ||||| || Sbjct 35108959 ATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTGTCCTGGATTTTTGCCTTCACATTA 35109018 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || |||||| || | ||||| ||||| ||||||| ||||| || Sbjct 35109019 TCAATTGTGTCTGAACTTTCTACCTCTAAGGTGATGGTCTTACCGGTCAACGTCTTCACA 35109078 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 35109079 AAGATCTGCAT 35109089 Score = 95.1 bits (104), Expect = 3e-14 Identities = 138/194 (71%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || ||||| || || || | ||| || || ||||| || || || ||| Sbjct 36295429 TCCTTCTGAATGTTGTAGTCAGCAAGGGTCCTTCCATCCTCCAATTGCTTCCCAGCAAAG 36295370 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| | ||| ||| |||||| ||||| || || ||||||||||| || || || Sbjct 36295369 ATCAACCTCTGCTGA---TCTGGGGGGATTCCCTCCTTGTCCTGGATTTTTGCCTTGACA 36295313 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || |||| || ||| || || | ||||| ||||| ||||||| ||||| Sbjct 36295312 TTATCGATAGTGTCTGAACTTTCCACCTCTAAGGTGATGGTCTTTCCGGTCAATGTCTTC 36295253 Query 288460 ACGAATATCTGCAT 288473 || || |||||||| Sbjct 36295252 ACAAAGATCTGCAT 36295239 Score = 89.7 bits (98), Expect = 1e-12 Identities = 161/233 (69%), Gaps = 12/233 (5%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || | ||| | ||| || |||||||| ||||| || || Sbjct 35111143 CCACCACGAAGACGGAGCACCAAATGGAGGGTGGACTCCTTTTGGATGTTATAATCAGCA 35111202 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363 || || || | || || | || || || || || ||||||||||| || ||| Sbjct 35111203 AGGGTACGCCTATCCTCCAGCTGCTTGCCAGCAAAAATCAGACGCTGCTG---GTCTGGA 35111259 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGAT 288420 ||||| |||||||| || || || || || || || || || || | ||| |||| Sbjct 35111260 GGGATCCCTTCTTTGTCTTGAATCTTGGCCTTAACATTGTCAATTGTATCGGAGCTC--- 35111316 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || ||||| ||||| || || |||||||| || || || ||||| Sbjct 35111317 TCCACCTCAAGGGTGATTGTCTTTCCTGTGAGAGTCTTCACAAAGATTTGCAT 35111369 Score = 89.7 bits (98), Expect = 1e-12 Identities = 163/233 (70%), Gaps = 12/233 (5%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | | || ||||||| || ||||| ||||||||||| || || Sbjct 36294781 CCACCACGAAGCCGCAAGACAAGATGAAGAGTCGACTCTTTCTGGATATTATAATCAGCC 36294722 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || |||||||| | ||| ||||| || || |||| || || ||| |||||| Sbjct 36294721 AGAGTTCGACCGTCTTCAAGTTGCTTTCCAGCAAAAATCA-AC-CT-TTGCTGGTCTGGG 36294665 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGAT 288420 || || || || || || || || || ||||| || || || | || |||| Sbjct 36294664 GGAATACCCTCCTTGTCTTGTATCTTGGCCTTCACATTGTCAATTGTGTCCGAGCTC--- 36294608 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || | || || ||||| || || |||||||| || || |||||||| Sbjct 36294607 TCTACCTCCAAAGTAATTGTCTTGCCAGTAAGAGTCTTCACAAAAATCTGCAT 36294555 Score = 87.8 bits (96), Expect = 4e-12 Identities = 162/235 (69%), Gaps = 7/235 (3%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || || || | || | ||| | || ||| || ||||||||||| | Sbjct 31259794 CATG-CCACCACGAAGCCTCAAAACCAAATGCAAAGTAGATTCCTTCTGGATATTATAAT 31259852 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 |||| | || || || || || || || ||||| || || || || | ||| || | Sbjct 31259853 CGGCCAAAGTACGACCATCCTCCAACTGCTTTCCAGCAAAAATTAGTCTCTGCTGGTCAG 31259912 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCG 288418 || || || ||||||||||| ||||| || ||||| || || || | ||| ||| Sbjct 31259913 GAGGAATGCCCTCTTTATCCTGAATTTTTGCCTTCACATTATCAATTGTATCAGAACTC- 31259971 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || | || || ||||| || || || ||||| || || |||||||| Sbjct 31259972 --TCAACCTCCAAAGTTATGGTCTTTCCAGTAAGGGTCTTAACAAAAATCTGCAT 31260024 >seq6 Length=35275713 Score = 129 bits (142), Expect = 1e-24 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || | ||| | ||| || |||||||| || || || || Sbjct 24039310 CCACCACGGAGACGGAGCACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAATCAGCA 24039251 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || || || | || || || || || ||||||||||| || | |||| Sbjct 24039250 AGGGTACGCCCATCCTCCAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCAGGTGGG 24039191 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT--A 288424 |||||||| || || || ||||| || || || || ||||| | ||| | | ||| | Sbjct 24039190 ATTCCTTCCTTGTCTTGAATTTTTGCCTTAACATTGTCTATGGTATC--TGAACTCTCAA 24039133 Query 288425 CTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||||| ||||| ||||| || || ||||||||||||||||| ||||| Sbjct 24039132 CTTCGAGAGTGATGGTCTTGCCAGTAAGAGTCTTGACGAATATTTGCAT 24039084 Score = 102 bits (112), Expect = 2e-16 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| || || || ||||| || || || | ||| || || ||||| || || || ||| Sbjct 24039957 TCTTTCTGAATGTTGTAGTCAGCAAGGGTTCTTCCATCCTCCAATTGCTTCCCAGCAAAG 24039898 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| | ||||||| |||||||||||| || ||||||||||| || || || || Sbjct 24039897 ATCAACCTCTGTTGATCTGGTGGGATTCCTTCCTTGTCCTGGATTTTTGCCTTAACATTA 24039838 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || ||| || || | || || ||||| || |||| |||||| || Sbjct 24039837 TCAATGGTGTCTGAACTTTCCACCTCCAATGTAATGGTCTTTCCTGTCAAAGTCTTCACA 24039778 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 24039777 AAGATCTGCAT 24039767 Score = 100 bits (110), Expect = 7e-16 Identities = 142/197 (72%), Gaps = 12/197 (6%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||||||||| || || ||||| || || | || ||||| | || ||||| || || Sbjct 24039502 TCTTTTTGGATGTTGTAATCGGCAAGAGTTCTGCCATCTTCAAGCTGCTTTCCAGCAAAA 24039443 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || || | ||| || |||||| || || || || ||||| || || ||||| || Sbjct 24039442 ATGAGCCTCTGCTGG---TCTGGGGGGATACCCTCCTTGTCCTGAATCTTGGCTTTGACA 24039386 Query 288400 TTTTCTATAGAATC---GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456 || || |||| ||| |||| || || || || ||||| ||||| || || |||||| Sbjct 24039385 TTATCAATAGTATCAGAGCTC---TCCACCTCAAGGGTGATTGTCTTTCCAGTGAGAGTC 24039329 Query 288457 TTGACGAATATCTGCAT 288473 |||||||| || ||||| Sbjct 24039328 TTGACGAAGATTTGCAT 24039312 Score = 95.1 bits (104), Expect = 3e-14 Identities = 152/216 (70%), Gaps = 7/216 (3%) Strand=Plus/Minus Query 288261 AAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTC 288320 ||| || ||||||| ||| ||| || ||||||||||| || || | || | || || Sbjct 24039751 AAGAACAAGATGAAGGGTGGATTCCTTCTGGATATTATAATCAGCCAATGTCCTGCCATC 24039692 Query 288321 TTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATC 288380 ||| | || ||||| ||||| |||| | || || | | ||||| || || || || Sbjct 24039691 TTCAAGCTGCTTTCCAGCGAAAATCAACCTTTGCTG-GTCTGGGGGATACCCTCCTTGTC 24039633 Query 288381 CTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCTACTTCGAGCGTGAT 288437 ||| || || || ||||| || || |||| ||| |||| ||||| || | || || Sbjct 24039632 CTGTATCTTGGCCTTCACATTGTCAATAGTATCTGAGCTC---TCTACCTCCAAAGTAAT 24039576 Query 288438 CGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| || ||||| || || |||||||| Sbjct 24039575 TGTTTTTCCGGTGAGGGTCTTCACAAAAATCTGCAT 24039540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179621344977786