Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq276 140 4e-28 seq7 140 4e-28 seq1 120 4e-22 seq8 114 2e-20 seq2 91.5 2e-13 >seq276 Length=24472 Score = 140 bits (154), Expect = 4e-28 Identities = 176/240 (73%), Gaps = 5/240 (2%) Strand=Plus/Minus Query 126047 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106 ||||| || ||| ||||| |||||||| || || || || || ||||| | ||| Sbjct 23007 GCAAAATCACAGTGCAGACCTTCGTCACGTGAAATAAGCTCGTTTGAGAATGTTAACCCT 22948 Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166 ||||| | ||| ||||| ||||||||||||||||| ||||| || |||||||| ||| Sbjct 22947 GGCATTAAACCGCGCTTTTTCAACCAGAAAATCGCGCAAAAGCTTCCGGAGAAGAAAATT 22888 Query 126167 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGC-AAAGGAGCGCGACTTTGTGTCAAA 126225 || || ||||| || || |||| || | ||||| |||| | ||| ||| |||| Sbjct 22887 CCTTCTACACAAGCAAATGCAACGATTCTTTCAGCAAAAGAATCGC----TTGAATCAAT 22832 Query 126226 CCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAA 126285 ||| ||||| ||||| | ||||||||| ||||||| || | |||| || || | ||| Sbjct 22831 CCATTTCATTGCCCAATCAGCCTTTTTCGCGATACATGGAATTGTCTCAATTGCATGAAA 22772 >seq7 Length=49172423 Score = 140 bits (154), Expect = 4e-28 Identities = 176/240 (73%), Gaps = 5/240 (2%) Strand=Plus/Plus Query 126047 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106 ||||| || ||| ||||| |||||||| || || || || || ||||| | ||| Sbjct 10197081 GCAAAATCACAGTGCAGACCTTCGTCACGTGAAATAAGCTCGTTTGAGAATGTTAACCCT 10197140 Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166 ||||| | ||| ||||| ||||||||||||||||| ||||| || |||||||| ||| Sbjct 10197141 GGCATTAAACCGCGCTTTTTCAACCAGAAAATCGCGCAAAAGCTTCCGGAGAAGAAAATT 10197200 Query 126167 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGC-AAAGGAGCGCGACTTTGTGTCAAA 126225 || || ||||| || || |||| || | ||||| |||| | ||| ||| |||| Sbjct 10197201 CCTTCTACACAAGCAAATGCAACGATTCTTTCAGCAAAAGAATCGC----TTGAATCAAT 10197256 Query 126226 CCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAA 126285 ||| ||||| ||||| | ||||||||| ||||||| || | |||| || || | ||| Sbjct 10197257 CCATTTCATTGCCCAATCAGCCTTTTTCGCGATACATGGAATTGTCTCAATTGCATGAAA 10197316 >seq1 Length=52991155 Score = 120 bits (132), Expect = 4e-22 Identities = 148/201 (74%), Gaps = 5/201 (2%) Strand=Plus/Minus Query 126065 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTC 126124 || ||||| || || || || || || |||||| | ||| ||||| | ||| ||||| Sbjct 19457500 CCTTCGTCGCGTGAAATAAGCTCGTTTGAGAAGGTTAATCCCGGCATTAAACCGCGCTTT 19457441 Query 126125 TTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAAC 126184 |||||||||||||||||||| || || ||||| |||||||| || ||||| || ||| Sbjct 19457440 TTCAACCAGAAAATCGCACAGAAGCTTCCGGAGAAAAAGATTCCTTCAACACAAGCAAAC 19457381 Query 126185 GCAAAGAGACGCTCAGC-AAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGCCCACTG 126243 |||| || | || || |||| | ||| ||| || | ||| ||||||||||| | Sbjct 19457380 GCAACGATTCTTTCTGCAAAAGAATCGC----TTGAATCGATCCATTTCATCGCCCAATC 19457325 Query 126244 CGCCTTTTTCTCGATACACGG 126264 || || ||| ||||||| || Sbjct 19457324 AGCTTTCTTCGCGATACATGG 19457304 >seq8 Length=45569985 Score = 114 bits (126), Expect = 2e-20 Identities = 237/351 (68%), Gaps = 5/351 (1%) Strand=Plus/Plus Query 126047 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106 ||||| || ||| | || ||||| || || || || || || ||||| | ||| Sbjct 25025573 GCAAAATCACAGTGTAAGCCTTCGTCGCGTGAAATAAGCTCGTTTGAGAAAGTTAATCCC 25025632 Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166 ||||| | ||| || || |||||||||||||||||||| || || |||||||| ||| Sbjct 25025633 GGCATTAAACCGCGTTTTTTCAACCAGAAAATCGCACAGAAGCTTCCGGAGAAGAAAATT 25025692 Query 126167 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGC-AAAGGAGCGCGACTTTGTGTCAAA 126225 || || ||||| ||||| |||| || | || || |||| | ||| ||| || | Sbjct 25025693 CCTTCAACACAAGCGAAAGCAACGATTCTTTCTGCAAAAGAATCGC----TTGAATCGAT 25025748 Query 126226 CCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAA 126285 ||| |||| ||||| | || || || | |||||||| | || | || || | ||| Sbjct 25025749 CCATTTCAAAGCCCAATCAGCTTTCTTAGCAATACACGGAATTGTGTCAATTGCGTGAAA 25025808 Query 126286 GAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTC 126345 | | |||||||| | | ||| | || ||| | || | ||| ||||| | || Sbjct 25025809 TAATCGATTCTTTTCAGCAGAATCGCTTATATACGTTTCGAGGAGAAGAGAATACATCTC 25025868 Query 126346 GCCGTGGACCATTTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTC 126396 ||||| ||||| || | ||| || ||||||||| |||||||| Sbjct 25025869 TGAGTGGATGTTTTCAATAGCGATTTGAAACCCGTAGAAAGCACGCGCTTC 25025919 >seq2 Length=45729672 Score = 91.5 bits (100), Expect = 2e-13 Identities = 174/255 (68%), Gaps = 6/255 (2%) Strand=Plus/Minus Query 10819 GTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAA 10878 |||||| |||||| | ||| || || || ||||||| ||| || || | || || Sbjct 15379699 GTCAAGAATATCAGCCCTGTTGGTTGCTGCAATGACAATGATTCCAGTATTACCCTCGAA 15379640 Query 10879 GCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGGCAT 10938 |||||||| || ||||| ||||| |||| ||| ||||| | |||||| ||| | Sbjct 15379639 TCCATCCATTTCTGTCAAAAGTTGGTTGAGGGTCTGTTCTCTTTCATCGTTCCCTCC--- 15379583 Query 10939 ACCACCCGCACTGC---GTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACA 10995 |||| || ||| ||||| | || || || ||||||||||| | ||||| ||||| Sbjct 15379582 ACCAATTCCAGTGCCTCGTTGCCTTCCCACAGCATCAATTTCATCAACAAAAACAATACA 15379523 Query 10996 CGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCAC 11055 || || || ||| || || | ||| || |||| ||||| | ||| || Sbjct 15379522 AGGAGCGTTCTCTTTGGCCTTTTTGAATAAATCGCGAACTCGAGAAGCACCAATACCGAC 15379463 Query 11056 AAACATTTCCACAAA 11070 |||||| || ||||| Sbjct 15379462 AAACATCTCAACAAA 15379448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597337269845960