Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_011216.1 Length=37635 Score E Sequences producing significant alignments: (Bits) Value seq1401 168 2e-37 seq1420 150 4e-32 >seq1401 Length=1891 Score = 168 bits (186), Expect = 2e-37 Identities = 278/396 (70%), Gaps = 4/396 (1%) Strand=Plus/Plus Query 14585 AGTACGACGTGAAGATCGGCGGGGCCAAGGGCAACGTGACGTTGCATTCGTTTGACGGTG 14644 |||||| ||| ||||||||||| ||||||||||| | ||| | || | ||||| Sbjct 349 AGTACGGCGTCAAGATCGGCGGCACCAAGGGCAACATCACGCTCGTGTCATACGACGGC- 407 Query 14645 CGCTG-AAGGTCGTCATCCAGCGCGCGGAAAACATGTCGTTCGACGAGCGCCTGCAGGCG 14703 |||| |||||||| ||| ||| || || ||||| ||||| ||||||||| Sbjct 408 CGCTACAAGGTCGTGCGACAGATCGCCGAGCGGATCCAGTTCGGCGAGCAGCTGCAGGCG 467 Query 14704 GCGAAGACCCTCATCGACGAGTGCATCAACGAATGGGCGCGCGGCAGCGATCCGAAGATC 14763 || || || |||||| |||||||| ||||||| ||| |||||| | || || Sbjct 468 GCCAAAGAACTGATCGACCAGTGCATCGTCGAATGGTCGCAGGGCAGCAACGACAACCTC 527 Query 14764 CAGGTGCTGGTTCAGCAGGCGTTCGAGACGGACAAGGAAGGCAAGATCAACGTCGGCCGC 14823 |||| ||||| | | |||||| || |||||||| ||||| | ||| |||||| Sbjct 528 AAGGTTCTGGTCAACGAAGCGTTCCAGGTCGACAAGGAGGGCAACGTGAACACGGGCCGC 587 Query 14824 GTACTTGCGCTGCGCCGCTTGGAGATCACGGACGACAAGTGGCA-ACGCGCCATGCAGGC 14882 || || | |||||||||| ||||||| ||| | ||||||| | ||| || ||| |||| Sbjct 588 GTGCTCGGCCTGCGCCGCTACGAGATCAAGGATGCCAAGTGGAAGACG-GCAATGGAGGC 646 Query 14883 GATCGGCGAGTCGGTGCAGGTCGTCGGCACGAAGACGTATATGCGCTTCTACGAGCGCGT 14942 |||| || | | || ||||| ||| |||| |||| | ||||||||| | Sbjct 647 GATCTCGGACAGCATTCGCGTTACCGGCAGCAAGCCGTACGTGCGGCTGTACGAGCGCAT 706 Query 14943 CGAGGGCAGCGAACAATACACGCCGATCAGCCTCGA 14978 || | |||||| | ||| |||||||||||||| Sbjct 707 CGGCGACAGCGACGAGTACGTACCGATCAGCCTCGA 742 >seq1420 Length=1851 Score = 150 bits (166), Expect = 4e-32 Identities = 233/333 (70%), Gaps = 6/333 (2%) Strand=Plus/Plus Query 14658 CATCCAGCGCGC------GGAAAACATGTCGTTCGACGAGCGCCTGCAGGCGGCGAAGAC 14711 |||||||||||| ||| ||| ||||||| || |||||||||||||| || | Sbjct 16 CATCCAGCGCGCCATCCAGGACCGCATCGCGTTCGATGAACGCCTGCAGGCGGCCAAATC 75 Query 14712 CCTCATCGACGAGTGCATCAACGAATGGGCGCGCGGCAGCGATCCGAAGATCCAGGTGCT 14771 | | ||||||||||| | ||| ||| | | | | || |||| |||| | | Sbjct 76 CATGATCGACGAGTGTCTTCGCGACTGGACTCTGGATGCCCGCCCTGAGATTCAGGCGAT 135 Query 14772 GGTTCAGCAGGCGTTCGAGACGGACAAGGAAGGCAAGATCAACGTCGGCCGCGTACTTGC 14831 || ||||||||| | ||| |||||||||||| | |||||| ||||||||| || || Sbjct 136 CGTGACGCAGGCGTTTGCGACCGACAAGGAAGGCCAAATCAACACCGGCCGCGTGCTCGC 195 Query 14832 GCTGCGCCGCTTGGAGATCACGGACGACAAGTGGCAACGCGCCATGCAGGCGATCGGCGA 14891 |||||| || ||||| ||||| || |||| || |||| |||||||||||| Sbjct 196 GCTGCGTCGATTGGACATCACCGATCCGCGCTGGCTGGAAGCGATGCGGGCGATCGGCGA 255 Query 14892 GTCGGTGCAGGTCGTCGGCACGAAGACGTATATGCGCTTCTACGAGCGCGTCGAGGGCAG 14951 | ||||||| |||||| ||| | || | ||| ||||||||||||||| | || Sbjct 256 AGCCCTGCAGGTGATCGGCAGCAAGTCATACGTCCGCGTCTACGAGCGCGTCGGCGACAC 315 Query 14952 CGAACAATACACGCCGATCAGCCTCGACTTCGC 14984 || |||||| | ||| |||||| |||| Sbjct 316 GGACCAATACGTACAGATTCCGCTCGACATCGC 348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 120307275463718