Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq979 260 1e-64 seq4 104 2e-17 seq5 102 8e-17 seq7 96.9 3e-15 seq6 93.3 4e-14 seq1 91.5 1e-13 seq8 87.8 2e-12 >seq979 Length=3763 Score = 260 bits (288), Expect = 1e-64 Identities = 501/727 (69%), Gaps = 24/727 (3%) Strand=Plus/Minus Query 28048 CGTCGACAAAGTGCCCGCGCCCAACCTGTCGCACTTGCTGTACGGTTTCGTGCCGATATG 28107 ||||||||| ||||| | ||||| ||||| |||||||||| ||||||||||| || Sbjct 1621 CGTCGACAACGTGCCGGTCGAAAACCTCACGCACATGCTGTACGGCTTCGTGCCGATCTG 1562 Query 28108 CGGCGGCGACGGCATAAACGACGCCCTCAAGACCGT--TCCCGGCA--GTTTCGAGGCGC 28163 |||||| | | ||| |||| | ||| | || | ||| ||| || | | | Sbjct 1561 CGGCGGAGCGGACATCAACGCGTCGCTCGCGCGCGACGTACCGAATTCGTTCCGCG-CAC 1503 Query 28164 TGCAGCGCTCGTGCGCCGGGCGCGCCGACTTCAAGGTGACGATCCACGATCCCTGGGCCG 28223 |||||| ||||||| |||| ||||||||| ||| ||||||||||| | |||| || Sbjct 1502 TGCAGCAGACGTGCGCGGGGCTGCCCGACTTCAGCGTGGCGATCCACGATACGTGGGGCG 1443 Query 28224 CCATTCAGAAGCCGCAAAAGGGCGTCTCTACGTGGAACGAGCCGTACAAAGGCAACTTTG 28283 || | | ||| | || | || |||| | | ||| ||| ||| Sbjct 1442 AGATGGGCATGACGCT---GCCCGGCCAGACCGCGAACTCGAAGCTCAAGGGCGTGCTTG 1386 Query 28284 GGCAATTGATGAGCGTCAAATTAGC-CAATCCGCACTTGAAGGTGCTGGCGTCGATCGGC 28342 | || ||||| || | || ||| |||||| || | ||| | ||| ||||||||||| Sbjct 1385 GCCAGATGATGGCCG-CGAAGAAGCGCAATCCCGACCTCAAGATCCTGCCGTCGATCGGC 1327 Query 28343 GGCTGGACGCTGTCGGACCCATTCTTTCACATGCACGACGCGACCGTGCGCCAAACGTTC 28402 |||||||||||||| || || ||||| || |||||||| || || |||| | |||| Sbjct 1326 GGCTGGACGCTGTCCGATCCGTTCTTCCAGCTGCACGACCCGGCCAAGCGCAAGGTGTTC 1267 Query 28403 ATCGATTCCGTCGTGGACTTTCTGCTGACCTGGAAGTTCTTCGACGGCGTCGACATCGAT 28462 ||||||| || | | || |||| |||||||||||||||||||| ||||||||||| Sbjct 1266 GTCGATTCGACCGAGCAGTTGCTGCGCACCTGGAAGTTCTTCGACGGTGTCGACATCGAC 1207 Query 28463 TGGGAGTTTCCGGGCGGCAAAGGAGCCAATCCCGATGTCGGCAA--CGCCGAGCGCGACC 28520 ||||| || ||||||||||| || || || || ||||||| ||| || || ||| Sbjct 1206 TGGGAATTCCCGGGCGGCAAGGGCGCGAACGGCGCGATCGGCAATCCGCAGA-CG-GACG 1149 Query 28521 GCGCCACCTACACTGCCCTGCTGCACGAGCTGCGCATCCAACTGGACGCCC-----TCGG 28575 |||| || | ||| || | || ||||| || || || || |||| Sbjct 1148 GCGCGCTGTATGTGACGCTGATGAAGGAACTGCG---GCAGATGCTCGACCGCGTGTCGG 1092 Query 28576 CGCTCGCACCGACCGCTACTATCCGCTGACGTCGGCCATCAGCGCGGGCAACGACAAGAT 28635 || ||||| | ||| |||||||||||| ||| |||||||||| |||||||| Sbjct 1091 CG--GACACCGGCAAGACCTACGAGCTGACGTCGGCGATCGGCGCGGGCAAGGACAAGAT 1034 Query 28636 CGCCGTGGTCGATTACGCCGAAGCGCAAAAGTACCTCGACACGATTTTTCTCATGACGTA 28695 || |||||| | ||| ||||| |||||| | ||| || || ||||||||| Sbjct 1033 CGACGTGGTGAACTACAAGGAAGCCACGAAGTACATGGACTACATCTTCGACATGACGTA 974 Query 28696 CGATTTCAAAGGCGCGTGGAGCAACACCGATCTGGGCCATCAGGCGGCACTGTTTGCGCC 28755 ||| | | | || |||| ||| || || ||||| || ||| |||| ||| ||||| Sbjct 973 CGACTACTACGGTGCGTTCAGCCTGACGGAGCTGGGTCACCAGACGGCGCTGCACGCGCC 914 Query 28756 CGCGTGG 28762 ||||||| Sbjct 913 CGCGTGG 907 >seq4 Length=56582383 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 138400 CGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAG 138459 |||||||| ||||| | | | |||||||||||||||||||| || | || ||| | Sbjct 31287773 CGCAAAACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATCAGCGAGCGTGCGCCCG 31287832 Query 138460 TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTG 138519 || || | ||| ||||||| |||| || | ||| || || ||||| ||||| || || Sbjct 31287833 TCTTCCAATTGCTTACCGGCGAAGATAAGCCTCTGCTGATCTGGAGGGATACCCTCCTTA 31287892 Query 138520 TCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAG 138578 || ||| | || | ||| | | || | || || | ||||||||| | || | Sbjct 31287893 TC-TTGAATCTTAGCTTTCACATTATCAATAGTATCTGAACTCTCCACCTCCAAAGTAAT 31287951 Query 138579 CGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || ||||||| ||| ||||||||||||||||| Sbjct 31287952 AGTCTTTCCAGTCAAAGTCTTTACAAAAATCTGCAT 31287987 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||| | | || ||||| | | | |||||||||||||||||||| |||| Sbjct 31306226 CCACCTCTCAATCTAAGCACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATCGCCA 31306285 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || ||| ||| || | ||| ||||||| |||| || | ||||| || ||||| Sbjct 31306286 AGTGTGCGCCCGTCTTCCAATTGCTTACCGGCGAAGATAAGCCTTTGTTGATCGGGAGGG 31306345 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| || ||||| ||| | || | ||| | | || | || || | ||| || Sbjct 31306346 ATACCCTCCTTGTC-TTGAATCTTAGCTTTCACATTATCAATAGTATCTGAACTCTCAAC 31306404 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || || ||||||| ||| || ||||| |||||||| Sbjct 31306405 CTCCAAAGTAATAGTCTTTCCAGTCAAAGTCTTAACAAATATCTGCAT 31306452 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || ||||| | | | ||||||||||| ||||| || || Sbjct 35111143 CCACCACGAAGACGGAGCACCAAATGGAGGGTGGACTCCTTTTGGATGTTATAATCAGCA 35111202 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| ||||| || || || || | | | || |||||||| ||||| ||||| Sbjct 35111203 AGGGTACGCCTATCCTCCAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCTGGAGGG 35111262 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA--ATTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||||||||| ||| | || | ||| |||| || | || |||| ||||| Sbjct 35111263 ATCCCTTCTTTGTC-TTGAATCTTGGCCTTAACATTG-TCAATTGTATCGGAGCTCTCCA 35111320 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || || || || ||||| || ||||| || ||||| Sbjct 35111321 CCTCAAGGGTGATTGTCTTTCCTGTGAGAGTCTTCACAAAGATTTGCAT 35111369 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| |||| ||| |||| || | || | | | || |||||||| |||||||| || Sbjct 31288216 GCCACCTCTCAATCGCAGCACAAGGTGAAGGGTGGATTCCTTTTGGATGTTGTAATCCGC 31288275 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || || || || | ||||||||| | | | || || | || || || ||||| Sbjct 31288276 AAGGGTGCGGCCATCTTCCAATTGTTTACCAGCAAATATAAGCCTTTGCTGATCGGGAGG 31288335 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCC 138564 |||||||| ||||| ||| | || | ||||| |||| | | ||| || | |||| Sbjct 31288336 AATACCTTCCTTGTCT-TGAATCTTAGCTTTAACGTTGT-CTATGGTATCAGAACTCTCC 31288393 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||||| || | ||||| ||||||| ||||| ||||| || ||||| Sbjct 31288394 ACCTCGAGGGTGATAGTTTTGCCAGTCAATGTTTTCACAAAGATTTGCAT 31288443 Score = 87.8 bits (96), Expect = 2e-12 Identities = 154/218 (71%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 138400 CGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTAC-GCGA 138458 ||||| || | ||| | |||||||||| || ||||||||||| || || | || | Sbjct 36294313 CGCAACACAAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCAGCCAAGGTTCTGCCA 36294254 Query 138459 GTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTT 138518 || || || ||||| || | | |||| || | ||| ||||| || || ||||||||||| Sbjct 36294253 -TCTTCAAGCTGTTTTCCAGCAAAGATGAGCCTCTGCTGGTCTGGTGGAATACCTTCTTT 36294195 Query 138519 GTCGGTGATTTTTTGTTTTA--ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTC 138576 ||| || | || | ||| |||| || | ||| || | ||||||||| | || Sbjct 36294194 GTC-CTGTATCTTGGCCTTAACATTG-TCAATGGTATCAGAGCTCTCCACCTCAAGGGTG 36294137 Query 138577 AGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | || || ||||| ||||| || ||||| || ||||| Sbjct 36294136 ATTGTCTTTCCAGTGAGAGTCTTCACAAATATTTGCAT 36294099 >seq5 Length=43630510 Score = 102 bits (112), Expect = 8e-17 Identities = 141/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| || |||||||||||| | ||| || ||| || || ||||| |||| Sbjct 14677235 GATTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGGCCGTCTTCCAGCTGTTTTCCGGCG 14677176 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| ||||| ||||||||||| || || ||||||||||| ||| || ||| | | Sbjct 14677175 AAGATGAGACGTTGTTGGTCCGGTGGGATTCCTTCTTTGTCTTGGATCTTGGCTTTCACA 14677116 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | |||||| | || || || |||| || | || || || || || ||||| Sbjct 14677115 TTG-TCGATGGTGTCTGAAGATTCAACTTCGAGGGTTATTGTCTTCCCGGTTAGGGTTTT 14677057 Query 138600 TACAAAAATCTGCAT 138614 || || |||||||| Sbjct 14677056 CACGAAGATCTGCAT 14677042 >seq7 Length=49172423 Score = 96.9 bits (106), Expect = 3e-15 Identities = 141/196 (72%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||| |||||||| || | |||||| ||| || || || || |||| | Sbjct 47989815 GACTCCTTTTGGATGTTGTAATCTGCAAGGGTACGCCCGTCTTCCAGCTGCTTGCCGGCA 47989756 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-- 138538 | ||||||||||| ||||| ||||| || ||||| ||||| ||| | || | ||| Sbjct 47989755 AAAATTAGACGCTGCTGGTCTGGAGGGATCCCTTCCTTGTC-TTGAATCTTGGCCTTAAC 47989697 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| || | || |||| ||||||||| | || | || || || || ||||| | Sbjct 47989696 ATTG-TCAATTGTATCGGAGCTCTCCACCTCAAGGGTGATTGTCTTTCCTGTGAGAGTCT 47989638 Query 138599 TTACAAAAATCTGCAT 138614 | ||||| || ||||| Sbjct 47989637 TCACAAAGATTTGCAT 47989622 >seq6 Length=35275713 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || ||||| | | | ||||||||||| |||||||| || Sbjct 24039310 CCACCACGGAGACGGAGCACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAATCAGCA 24039251 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| ||||| || || || || | | | || |||||||| ||||| || || Sbjct 24039250 AGGGTACGCCCATCCTCCAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCAGGTGGG 24039191 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA--ATTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||| ||||| ||| |||||| ||| |||| || | ||| || | ||| | Sbjct 24039190 ATTCCTTCCTTGTC-TTGAATTTTTGCCTTAACATTG-TCTATGGTATCTGAACTCTCAA 24039133 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | |||| || | || || ||||| ||||| || || || || ||||| Sbjct 24039132 CTTCGAGAGTGATGGTCTTGCCAGTAAGAGTCTTGACGAATATTTGCAT 24039084 >seq1 Length=52991155 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||| || || || ||||| || | ||| | ||| || || ||||| |||| Sbjct 28610557 GACTCTTTCTGGATATTGTAATCCGCAAGAGTTCTACCGTCTTCTAGCTGTTTTCCGGCG 28610498 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| ||||| |||||||| || || || ||||||||||| |||||| ||| | Sbjct 28610497 AAGATGAGACGTTGTTGGTCAGGTGGAATTCCTTCTTTGTCTTGGATTTTGGCTTTGACG 28610438 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||||| || || ||||| | || | ||||| || |||| ||||| Sbjct 28610437 TTGTCGATTGTGTCGGATGATTCTACCTCTAGGGTTATTGTTTTGCCGGTCAAGGTTTTC 28610378 Query 138601 ACAAAAATCTGCATG 138615 || |||||||||||| Sbjct 28610377 ACGAAAATCTGCATG 28610363 >seq8 Length=45569985 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| || |||||||||||| | ||| || ||| || | || || |||| Sbjct 36460052 GATTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGTCCGTCTTCCAACTGCTTTCCGGCG 36459993 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| ||||| || ||||| || || || ||||| || || ||| || ||| | | Sbjct 36459992 AAGATGAGACGTTGCTGGTCAGGTGGAATTCCTTCCTTATCCTGGATCTTGGCTTTGACA 36459933 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | ||||||| ||||| ||||||| || | ||| || || || || ||||| Sbjct 36459932 TTG-TCGATTGTGTCGGAAGACTCAACCTCGAGGGTTATCGTCTTCCCTGTTAGGGTTTT 36459874 Query 138600 TACAAAAATCTGCAT 138614 || || |||||||| Sbjct 36459873 CACGAAGATCTGCAT 36459859 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || ||||| | | | ||||||||||| ||||| || || Sbjct 35000596 CCACCACGGAGACGGAGCACCAAATGAAGGGTAGACTCCTTTTGGATGTTATAATCCGCA 35000655 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| ||||| |||||||| || | | | || |||||||| || || || || Sbjct 35000656 AGGGTACGCCCATCCTCCAGTTGTTTGCCAGCAAAAATGAGACGCTGCTGATCAGGTGGG 35000715 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA--ATTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||| ||||| ||| | || | ||| |||| || | ||| || | ||| | Sbjct 35000716 ATCCCTTCCTTGTC-TTGAATCTTGGCCTTAACATTG-TCTATGGTATCTGAACTCTCAA 35000773 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | |||| || | || || ||||| || || || || ||||| ||||| Sbjct 35000774 CTTCGAGAGTGATGGTCTTGCCAGTGAGGGTCTTAACGAAAATTTGCAT 35000822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496248833426640