Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_011357.1 Length=62147 Score E Sequences producing significant alignments: (Bits) Value seq1405 172 2e-38 >seq1405 Length=1883 Score = 172 bits (190), Expect = 2e-38 Identities = 608/930 (65%), Gaps = 26/930 (3%) Strand=Plus/Minus Query 16254 GCCCATCGAGCGGGGTATCGCCGGACCGGGGCTGCTGGCCCGCGTGCTGACCTCGAAGTA 16313 ||| |||||||| ||||||| ||| | |||| ||| | | ||| |||||||| Sbjct 1287 GCCGATCGAGCGCAGTATCGCGCATCCGAGCTTGCTTGCCGACATTCTGGTGTCGAAGTA 1228 Query 16314 TGCAGAGCACACCCCGCTGTATCGCCAGTCAGAAATATACGGCCGGCAA-GGTGTGGAGC 16372 ||||| || | |||||||| || || || ||||| | |||| || | || ||| || Sbjct 1227 CGCAGATCATGCGCCGCTGTACCGACAATCGGAAAT-TGCGGCGCGCGACGGGGTGACGC 1169 Query 16373 TGAGGCGTTCACTGC-TGTCGGGCTGGGT-GGAT-GCATGCTGCCGGCTGCTGTCTCCGC 16429 | || | | || || ||||||| ||| | || || |||| | | ||| Sbjct 1168 TTGACCGCGC-CAGCATGGGTCGCTGGGTCGGACAGTGTGAGGCGCTCTGCCGCC--CGC 1112 Query 16430 TGGAAGAGGCGCTTCATGGCTATGTCATGACTGACGGCAAACTCCATGCCGATGATACCC 16489 || || ||||| | | ||| ||| | | | || | || || || || || | Sbjct 1111 TGACCGACGCGCTGCGCCGGTATACGATGGCGGGCACGAAGTTGCACGCGGACGACACGC 1052 Query 16490 CGGTCCAGGTACTGCTGCCGGGTAATAAGAAGACGAAGACCGGGCGGTTGTGGGCGTATG 16549 || ||| || || ||| || || |||||||||||||||||||| | |||| ||| | Sbjct 1051 CGATCCCCGTGCTCGCGCCAGGCAACAAGAAGACGAAGACCGGGCGACTCTGGGTGTACG 992 Query 16550 TTCGTGATGACCGCAATGCAGGGTCAGCGTTGGCACCTGCAGTGTGGTTCGCTTACAGCC 16609 | || || ||| || | | || || || | | |||| ||||||||||| ||| Sbjct 991 TGCGCGACGACAGCCGTTCGGGCTCGACGGAGCCGGCTGCGGTGTGGTTCGCGTACTCGT 932 Query 16610 CGGACAGAAAAGGCATCCATCCGCAGACTCATCTTGCCTGCTTCAGCGGTGTGCTGCAAG 16669 || | |||||||||||||| ||||| ||||| ||| | ||| || | ||||||| Sbjct 931 GCGATCGCAAAGGCATCCATCCTCAGACGCATCTCGCCGGATTCGAAGGCATCCTGCAAG 872 Query 16670 CGGATGCGTACGCCGGGTTCAACGAGCTGTATCGCAA-TGGTGGGATAACGGAAGCTGCC 16728 | ||||| |||| ||| ||| ||||| |||| || || ||| ||| || ||||| Sbjct 871 CCGATGCCTACGGCGGCTTCGACGAGTTGTA-CGTAAGTGGCAAGATCCGCGAGGCTGCT 813 Query 16729 TGCTGGGCTCATGCCCGCCGAAAGATCCACGATGTGCACGTCCGCATCCCGTCAGCACTG 16788 || |||| || || || ||||| | |||| | |||| ||| ||| | | | Sbjct 812 TGTTGGGACCACGCGCGGAGAAAGTACTACGAGATCCACGCGAGCACACCGACGGACGAG 753 Query 16789 ACGGAAGAAGCCCTGGAGCAGATCGGTCAGTTGTACGCCATAGAGGCGGATATAAGGGGA 16848 || | || || ||| |||||| |||| |||| ||| || | || || | || Sbjct 752 ACCCAGAAACTGCTCGAGATGATCGGCGAGTTCTACGGCATTGAAACCGACATCCGCGGC 693 Query 16849 ATGCCGGCAGA------GCAGCGGCTTGCTGAACGTCAGCGAAAAACGAAACCGTTGTTG 16902 | |||| | || ||||| || ||| | ||| || |||| || ||| || || Sbjct 692 AAGCCGCCCGATGAACGGCAGC-GCGTGCGG--CGTGAG---AAAAGCAAGCCGCTGCTG 639 Query 16903 AAATCCCTGGAAAGCTGGTTGCGTGAAAAGATGAAGACCCTGTCGCGACACTCAGAGTTG 16962 | || | |||| | | || | ||| | ||| |||||||| | || ||| || Sbjct 638 GACGCCTTCGAAACGAGAATCCGGGCCAAGCTCGCGACGCTGTCGCGCAAGTCGGAGCTG 579 Query 16963 GCGAAGGCGTTCGCGTACGCACTTAACCAGTGGCCGGCACTGACG-TACTATGCGAACGA 17021 || ||| || |||| | || || || ||| | || |||||| | | |||| | || Sbjct 578 GCCGGCGCGATCCAGTACTCGCTGAATCACTGGACTGCGCTGACGCTGTTCTGCG-AGGA 520 Query 17022 TGGCTGGGTGGAAATCGACAACAACATCGCTGAAAATGCCCTGCGGGCGGTCAGTCTGGG 17081 ||| | || ||| |||| | || ||||| |||||||| || || || || Sbjct 519 TGGGCAAGCCGAGATCAGCAACGCGTTGGCAGAAAACGCCCTGCGTTGCGTGAGCCTCGG 460 Query 17082 TCGTAAAAACTTCCTGTTCTTCGGCTCTGATCATGGTGGTGAGCGGGGAG-CGCTACTGT 17140 | || |||||||||||| || || || || |||||||||| | ||| | ||| Sbjct 459 GAGAAAGAACTTCCTGTTCGCTGGTTCCGACAGCGGGGGTGAGCGGGCCGCCGCGA-TGT 401 Query 17141 ACAGCCTGATCGGGACGTGCAAACTGAATG 17170 ||||| |||| || |||||||||| |||| Sbjct 400 ACAGCTTGATTGGTGCGTGCAAACTCAATG 371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 198740302622356