Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_013055.1 Length=39896 Score E Sequences producing significant alignments: (Bits) Value seq1894 219 1e-52 seq1779 199 1e-46 >seq1894 Length=1268 Score = 219 bits (242), Expect = 1e-52 Identities = 226/292 (77%), Gaps = 4/292 (1%) Strand=Plus/Plus Query 34876 ACAACAGGGGAACGCTGAAGATGCTTCGAACAAACGTGATCAGGCGCGCGCTGATGCTGC 34935 |||||||| || ||| |||||| |||| ||||||||||||| ||||||||||| Sbjct 260 ACAACAGGAGATCGCAACCGATGCTGCGAAAGAACGTGATCAGGCAGCTGCTGATGCTGC 319 Query 34936 CCGCGCTGCTTCTTCTGCTGACAGCCTGCGCCAGCAAGTCGACGAGCTCATCGCC--CGT 34993 || | | || |||||||| | |||||| |||||||| || ||| ||||| ||| Sbjct 320 TGTTGCCGGTGCTGCTGCTGACGGGCTGCGCAGGCAAGTCGCCGCACTCGTCGCCGACGT 379 Query 34994 ACACGCGATCCCGGCGATGCGACCGGAGGCGCGGCAGCCGTCGGCGCCCTCGATCTGCTT 35053 | ||| | |||||| |||| ||||| || ||||| ||| || |||||||||||||||| Sbjct 380 CCG-GCG-TGCCGGCGCTGCGGCCGGAAGCCCGGCAACCGGCGACGCCCTCGATCTGCTT 437 Query 35054 GCCGACATGTTCGGCCGGACTGACGAGGCTGCGGGAGAATTCGCGCGAATCGCTGACGAG 35113 |||||| |||||||||||||||||||| |||||||||| | ||| |||||||| ||| Sbjct 438 GCCGACGTGTTCGGCCGGACTGACGAGCGTGCGGGAGAACTGGCGAAGATCGCTGATGAG 497 Query 35114 CGGGGCATTGCCGGGCGGCAGTGCGAAAGCGACTACGACGCGCTGACGGGCG 35165 || || || || || | |||||| ||| || ||||||||| ||| |||| Sbjct 498 CGCGGGATCGCTGGCCAGCAGTGTGAACGCAGTTACGACGCGTTGATCGGCG 549 >seq1779 Length=1379 Score = 199 bits (220), Expect = 1e-46 Identities = 170/210 (81%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 37884 AAGAAGTTCATGACCGTCAACGCTCGATCGGAGACAGTCGCCGAGAAGCCTGCGTACCGC 37943 ||| | |||||||||||||| || | || ||||| |||||||||||||| ||||| || Sbjct 1163 AAGCATTTCATGACCGTCAATGCCAGGTCCGAGACCGTCGCCGAGAAGCCCGCGTATCGG 1222 Query 37944 ACAGCGTGGCGCGCCGGCCAGCGCTGCCTGATCCCCGTAAAGTGGGTGTACGAGCCGAAC 38003 || ||||||||||| |||||||||||||||||||||| ||| | ||||| |||||| Sbjct 1223 ACGGCGTGGCGCGCGGGCCAGCGCTGCCTGATCCCCGCGGCATGGATCTACGAACCGAAC 1282 Query 38004 TGGGAGACGGGGAAGCACGTGAGCTATCGGATCGGCGTGGGCGACTGGCGGCCATACTGC 38063 |||||||| || ||||| ||| | || ||||| ||| | | ||||||| ||| |||| Sbjct 1283 TGGGAGACCGGCAAGCATGTGCGGTACCGGATTGGCATTGCTGACTGGCAACCACTCTGC 1342 Query 38064 GTCGCGGGCATCTGGCGTGCGTGGCGTGGC 38093 |||| ||||||||||| |||||||| ||| Sbjct 1343 ATCGCCGGCATCTGGCGCGCGTGGCGCGGC 1372 Score = 168 bits (186), Expect = 2e-37 Identities = 139/167 (83%), Gaps = 2/167 (1%) Strand=Plus/Plus Query 37609 CTGTATAAAAACACAGTGTATCCCGGGGTAAGATGGGGCCGTCAAGATCGAAAATAGGGG 37668 |||||| | | |||||||||| |||||||||||||||||||||||| |||||||||||| Sbjct 1004 CTGTATGGATATACAGTGTATCGCGGGGTAAGATGGGGCCGTCAAGAACGAAAATAGGGG 1063 Query 37669 AGCGGTCTATGTGCACGAATTACCGCGCACCGCACGAGGACTTCGAGCTGCGAGAACTGA 37728 | ||| | |||||||| || |||||||| ||||| ||||||| |||||||| || |||| Sbjct 1064 A-CGG-CGATGTGCACCAACTACCGCGCGCCGCATGAGGACTATGAGCTGCGCGAGCTGA 1121 Query 37729 GGATCGAGCCGTTCAGCGACCTGTACCGCCGCGCTCCGTGGAAGGAT 37775 |||| |||| |||||||| || ||||| ||| || |||||| || Sbjct 1122 AGATCCAGCCATTCAGCGATCTCTACCGGCGCTTCCCATGGAAGCAT 1168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127542287561052