Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq276 134 2e-26 seq7 134 2e-26 seq1 111 2e-19 seq2 102 1e-16 seq8 100 3e-16 >seq276 Length=24472 Score = 134 bits (148), Expect = 2e-26 Identities = 174/240 (73%), Gaps = 3/240 (1%) Strand=Plus/Minus Query 127519 AGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 127578 |||||| || ||| ||||| |||||||| || || || || || ||||| | || Sbjct 23008 AGCAAAATCACAGTGCAGACCTTCGTCACGTGAAATAAGCTCGTTTGAGAATGTTAACCC 22949 Query 127579 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 127638 |||||| | ||| ||||| ||||||||||||||||| ||||| || |||||||| || Sbjct 22948 TGGCATTAAACCGCGCTTTTTCAACCAGAAAATCGCGCAAAAGCTTCCGGAGAAGAAAAT 22889 Query 127639 CCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAA 127698 || || ||||| || || |||| | | || ||||| || | ||| ||||| Sbjct 22888 TCCTTCTACACAAGCAAATGCAACGATTCTTTCAGCAAAAGAATCG---CTTGAATCAAT 22832 Query 127699 CCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAA 127758 ||| ||||| ||||| | ||||||||| |||||||||| | |||| || || | ||| Sbjct 22831 CCATTTCATTGCCCAATCAGCCTTTTTCGCGATACATGGAATTGTCTCAATTGCATGAAA 22772 >seq7 Length=49172423 Score = 134 bits (148), Expect = 2e-26 Identities = 174/240 (73%), Gaps = 3/240 (1%) Strand=Plus/Plus Query 127519 AGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 127578 |||||| || ||| ||||| |||||||| || || || || || ||||| | || Sbjct 10197080 AGCAAAATCACAGTGCAGACCTTCGTCACGTGAAATAAGCTCGTTTGAGAATGTTAACCC 10197139 Query 127579 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 127638 |||||| | ||| ||||| ||||||||||||||||| ||||| || |||||||| || Sbjct 10197140 TGGCATTAAACCGCGCTTTTTCAACCAGAAAATCGCGCAAAAGCTTCCGGAGAAGAAAAT 10197199 Query 127639 CCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAA 127698 || || ||||| || || |||| | | || ||||| || | ||| ||||| Sbjct 10197200 TCCTTCTACACAAGCAAATGCAACGATTCTTTCAGCAAAAGAATCG---CTTGAATCAAT 10197256 Query 127699 CCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAA 127758 ||| ||||| ||||| | ||||||||| |||||||||| | |||| || || | ||| Sbjct 10197257 CCATTTCATTGCCCAATCAGCCTTTTTCGCGATACATGGAATTGTCTCAATTGCATGAAA 10197316 >seq1 Length=52991155 Score = 111 bits (122), Expect = 2e-19 Identities = 145/200 (73%), Gaps = 3/200 (2%) Strand=Plus/Minus Query 127538 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597 || ||||| || || || || || || |||||| | || ||||| | ||| ||||| Sbjct 19457500 CCTTCGTCGCGTGAAATAAGCTCGTTTGAGAAGGTTAATCCCGGCATTAAACCGCGCTTT 19457441 Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 127657 |||||||||||||||||||| || || ||||| ||||| || || ||||| || ||| Sbjct 19457440 TTCAACCAGAAAATCGCACAGAAGCTTCCGGAGAAAAAGATTCCTTCAACACAAGCAAAC 19457381 Query 127658 GCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCCCACTGT 127717 |||| | | || ||||| || | ||| ||| | ||| ||||||||||| | Sbjct 19457380 GCAACGATTCTTTCTGCAAAAGAATCG---CTTGAATCGATCCATTTCATCGCCCAATCA 19457324 Query 127718 GCCTTTTTCTCGATACATGG 127737 || || ||| |||||||||| Sbjct 19457323 GCTTTCTTCGCGATACATGG 19457304 >seq2 Length=45729672 Score = 102 bits (112), Expect = 1e-16 Identities = 274/415 (66%), Gaps = 8/415 (2%) Strand=Plus/Minus Query 12734 GTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCGAA 12793 |||||| |||||| | ||| || || || ||||||| ||| || || | ||||| Sbjct 15379699 GTCAAGAATATCAGCCCTGTTGGTTGCTGCAATGACAATGATTCCAGTATTACCCTCGAA 15379640 Query 12794 GCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGCAT 12853 |||||||| || ||||| ||||| |||| ||| ||||| | |||||| ||| | Sbjct 15379639 TCCATCCATTTCTGTCAAAAGTTGGTTGAGGGTCTGTTCTCTTTCATCGTTCCCTCC--- 15379583 Query 12854 ACCACCCGCACTGC---GTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACA 12910 |||| || ||| ||||| | || || || |||||||| |||| ||||| ||||| Sbjct 15379582 ACCAATTCCAGTGCCTCGTTGCCTTCCCACAGCATCAATTTCATCAACAAAAACAATACA 15379523 Query 12911 CGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCAC 12970 || || || ||| || || | ||| || |||| ||||| | ||| || Sbjct 15379522 AGGAGCGTTCTCTTTGGCCTTTTTGAATAAATCGCGAACTCGAGAAGCACCAATACCGAC 15379463 Query 12971 AAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCG 13029 ||||||||| ||||| | | | | | |||| || || ||||| | |||||| | Sbjct 15379462 AAACATCTCAACAAACTCAGAACCTG-AGATTGAGAAAAATGGGACACCTGCTTCACCGG 15379404 Query 13030 CGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCAC 13089 | || || || | || |||||||| || ||||| || |||||| | || Sbjct 15379403 CAATAGCCTTAGCTAATAGTGTCTTCCCAGTTCCTGGGGGACCAATGAGAAGAACCCCTT 15379344 Query 13090 GTGGGATCCTGGCACCACTTCCAAAGTAGCGCTCGGGTTGTTTAAGAAAGTCCAC 13144 ||| || | || ||| | || | | | ||| || | ||| ||||| ||||| Sbjct 15379343 TTGGTATGCGAGCCCCAATAGCAGTGAACCTCTCAGGCTTTTTTAGAAACTCCAC 15379289 >seq8 Length=45569985 Score = 100 bits (110), Expect = 3e-16 Identities = 233/351 (66%), Gaps = 3/351 (1%) Strand=Plus/Plus Query 127519 AGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 127578 |||||| || ||| | || ||||| || || || || || || ||||| | || Sbjct 25025572 AGCAAAATCACAGTGTAAGCCTTCGTCGCGTGAAATAAGCTCGTTTGAGAAAGTTAATCC 25025631 Query 127579 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 127638 ||||| | ||| || || |||||||||||||||||||| || || |||||||| || Sbjct 25025632 CGGCATTAAACCGCGTTTTTTCAACCAGAAAATCGCACAGAAGCTTCCGGAGAAGAAAAT 25025691 Query 127639 CCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAA 127698 || || ||||| ||||| |||| | | || ||||| || | ||| ||| | Sbjct 25025692 TCCTTCAACACAAGCGAAAGCAACGATTCTTTCTGCAAAAGAATCG---CTTGAATCGAT 25025748 Query 127699 CCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAA 127758 ||| |||| ||||| | || || || | ||||| || | || | || || | ||| Sbjct 25025749 CCATTTCAAAGCCCAATCAGCTTTCTTAGCAATACACGGAATTGTGTCAATTGCGTGAAA 25025808 Query 127759 GAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTC 127818 | | |||||||| | | ||| | || ||| | || | ||| ||||| | || Sbjct 25025809 TAATCGATTCTTTTCAGCAGAATCGCTTATATACGTTTCGAGGAGAAGAGAATACATCTC 25025868 Query 127819 GCCGTGGACCATTTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTC 127869 ||||| ||||| || | ||| || ||||||||| |||||||| Sbjct 25025869 TGAGTGGATGTTTTCAATAGCGATTTGAAACCCGTAGAAAGCACGCGCTTC 25025919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613490428246920