Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18]
2,187 sequences; 412,924,424 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq276 134 2e-26
seq7 134 2e-26
seq1 111 2e-19
seq2 102 1e-16
seq8 100 3e-16
>seq276
Length=24472
Score = 134 bits (148), Expect = 2e-26
Identities = 174/240 (73%), Gaps = 3/240 (1%)
Strand=Plus/Minus
Query 127519 AGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 127578
|||||| || ||| ||||| |||||||| || || || || || ||||| | ||
Sbjct 23008 AGCAAAATCACAGTGCAGACCTTCGTCACGTGAAATAAGCTCGTTTGAGAATGTTAACCC 22949
Query 127579 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 127638
|||||| | ||| ||||| ||||||||||||||||| ||||| || |||||||| ||
Sbjct 22948 TGGCATTAAACCGCGCTTTTTCAACCAGAAAATCGCGCAAAAGCTTCCGGAGAAGAAAAT 22889
Query 127639 CCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAA 127698
|| || ||||| || || |||| | | || ||||| || | ||| |||||
Sbjct 22888 TCCTTCTACACAAGCAAATGCAACGATTCTTTCAGCAAAAGAATCG---CTTGAATCAAT 22832
Query 127699 CCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAA 127758
||| ||||| ||||| | ||||||||| |||||||||| | |||| || || | |||
Sbjct 22831 CCATTTCATTGCCCAATCAGCCTTTTTCGCGATACATGGAATTGTCTCAATTGCATGAAA 22772
>seq7
Length=49172423
Score = 134 bits (148), Expect = 2e-26
Identities = 174/240 (73%), Gaps = 3/240 (1%)
Strand=Plus/Plus
Query 127519 AGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 127578
|||||| || ||| ||||| |||||||| || || || || || ||||| | ||
Sbjct 10197080 AGCAAAATCACAGTGCAGACCTTCGTCACGTGAAATAAGCTCGTTTGAGAATGTTAACCC 10197139
Query 127579 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 127638
|||||| | ||| ||||| ||||||||||||||||| ||||| || |||||||| ||
Sbjct 10197140 TGGCATTAAACCGCGCTTTTTCAACCAGAAAATCGCGCAAAAGCTTCCGGAGAAGAAAAT 10197199
Query 127639 CCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAA 127698
|| || ||||| || || |||| | | || ||||| || | ||| |||||
Sbjct 10197200 TCCTTCTACACAAGCAAATGCAACGATTCTTTCAGCAAAAGAATCG---CTTGAATCAAT 10197256
Query 127699 CCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAA 127758
||| ||||| ||||| | ||||||||| |||||||||| | |||| || || | |||
Sbjct 10197257 CCATTTCATTGCCCAATCAGCCTTTTTCGCGATACATGGAATTGTCTCAATTGCATGAAA 10197316
>seq1
Length=52991155
Score = 111 bits (122), Expect = 2e-19
Identities = 145/200 (73%), Gaps = 3/200 (2%)
Strand=Plus/Minus
Query 127538 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597
|| ||||| || || || || || || |||||| | || ||||| | ||| |||||
Sbjct 19457500 CCTTCGTCGCGTGAAATAAGCTCGTTTGAGAAGGTTAATCCCGGCATTAAACCGCGCTTT 19457441
Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 127657
|||||||||||||||||||| || || ||||| ||||| || || ||||| || |||
Sbjct 19457440 TTCAACCAGAAAATCGCACAGAAGCTTCCGGAGAAAAAGATTCCTTCAACACAAGCAAAC 19457381
Query 127658 GCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCCCACTGT 127717
|||| | | || ||||| || | ||| ||| | ||| ||||||||||| |
Sbjct 19457380 GCAACGATTCTTTCTGCAAAAGAATCG---CTTGAATCGATCCATTTCATCGCCCAATCA 19457324
Query 127718 GCCTTTTTCTCGATACATGG 127737
|| || ||| ||||||||||
Sbjct 19457323 GCTTTCTTCGCGATACATGG 19457304
>seq2
Length=45729672
Score = 102 bits (112), Expect = 1e-16
Identities = 274/415 (66%), Gaps = 8/415 (2%)
Strand=Plus/Minus
Query 12734 GTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCGAA 12793
|||||| |||||| | ||| || || || ||||||| ||| || || | |||||
Sbjct 15379699 GTCAAGAATATCAGCCCTGTTGGTTGCTGCAATGACAATGATTCCAGTATTACCCTCGAA 15379640
Query 12794 GCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGCAT 12853
|||||||| || ||||| ||||| |||| ||| ||||| | |||||| ||| |
Sbjct 15379639 TCCATCCATTTCTGTCAAAAGTTGGTTGAGGGTCTGTTCTCTTTCATCGTTCCCTCC--- 15379583
Query 12854 ACCACCCGCACTGC---GTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACA 12910
|||| || ||| ||||| | || || || |||||||| |||| ||||| |||||
Sbjct 15379582 ACCAATTCCAGTGCCTCGTTGCCTTCCCACAGCATCAATTTCATCAACAAAAACAATACA 15379523
Query 12911 CGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCAC 12970
|| || || ||| || || | ||| || |||| ||||| | ||| ||
Sbjct 15379522 AGGAGCGTTCTCTTTGGCCTTTTTGAATAAATCGCGAACTCGAGAAGCACCAATACCGAC 15379463
Query 12971 AAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCG 13029
||||||||| ||||| | | | | | |||| || || ||||| | |||||| |
Sbjct 15379462 AAACATCTCAACAAACTCAGAACCTG-AGATTGAGAAAAATGGGACACCTGCTTCACCGG 15379404
Query 13030 CGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCAC 13089
| || || || | || |||||||| || ||||| || |||||| | ||
Sbjct 15379403 CAATAGCCTTAGCTAATAGTGTCTTCCCAGTTCCTGGGGGACCAATGAGAAGAACCCCTT 15379344
Query 13090 GTGGGATCCTGGCACCACTTCCAAAGTAGCGCTCGGGTTGTTTAAGAAAGTCCAC 13144
||| || | || ||| | || | | | ||| || | ||| ||||| |||||
Sbjct 15379343 TTGGTATGCGAGCCCCAATAGCAGTGAACCTCTCAGGCTTTTTTAGAAACTCCAC 15379289
>seq8
Length=45569985
Score = 100 bits (110), Expect = 3e-16
Identities = 233/351 (66%), Gaps = 3/351 (1%)
Strand=Plus/Plus
Query 127519 AGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 127578
|||||| || ||| | || ||||| || || || || || || ||||| | ||
Sbjct 25025572 AGCAAAATCACAGTGTAAGCCTTCGTCGCGTGAAATAAGCTCGTTTGAGAAAGTTAATCC 25025631
Query 127579 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 127638
||||| | ||| || || |||||||||||||||||||| || || |||||||| ||
Sbjct 25025632 CGGCATTAAACCGCGTTTTTTCAACCAGAAAATCGCACAGAAGCTTCCGGAGAAGAAAAT 25025691
Query 127639 CCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAA 127698
|| || ||||| ||||| |||| | | || ||||| || | ||| ||| |
Sbjct 25025692 TCCTTCAACACAAGCGAAAGCAACGATTCTTTCTGCAAAAGAATCG---CTTGAATCGAT 25025748
Query 127699 CCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAA 127758
||| |||| ||||| | || || || | ||||| || | || | || || | |||
Sbjct 25025749 CCATTTCAAAGCCCAATCAGCTTTCTTAGCAATACACGGAATTGTGTCAATTGCGTGAAA 25025808
Query 127759 GAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTC 127818
| | |||||||| | | ||| | || ||| | || | ||| ||||| | ||
Sbjct 25025809 TAATCGATTCTTTTCAGCAGAATCGCTTATATACGTTTCGAGGAGAAGAGAATACATCTC 25025868
Query 127819 GCCGTGGACCATTTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTC 127869
||||| ||||| || | ||| || ||||||||| ||||||||
Sbjct 25025869 TGAGTGGATGTTTTCAATAGCGATTTGAAACCCGTAGAAAGCACGCGCTTC 25025919
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613490428246920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |