Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq8 102 9e-17 seq1 102 9e-17 seq7 89.7 6e-13 >seq8 Length=45569985 Score = 102 bits (112), Expect = 9e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || || | || ||| | || ||||| | ||| |||||| ||||| ||||| || | Sbjct 33775198 CCACCACGTAGACGGAGGACAAGATGAAGGGTAGACTCCTTCTGGATGTTGTAATCAGCA 33775139 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| |||| ||||||||||| |||||||| ||||| | ||||||||| || Sbjct 33775138 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCAGGGGA 33775079 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 46545 | | ||||| ||| |||||| |||| ||| | | | |||||| ||| || Sbjct 33775078 ATTCCTTCCTTATCCTGGATCTTGGCTTTGA-CGTTGTCGATGGTGTCGGAGCTTTCGAC 33775020 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | ||| |||| ||||| || || || ||||| ||||| ||||| Sbjct 33775019 CTCAAGGGTGGTGGTCTTGCCGGTGAGGGTCTTAACGAAGATCTGCAT 33774972 Score = 82.4 bits (90), Expect = 9e-11 Identities = 157/230 (68%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| || ||||| | || || || | ||| ||| || || || ||||| || | Sbjct 34999912 CCTCCCCTCAAACGAAGGACAAGGTGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGCA 34999971 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||||| || | || ||||||||||| || || || ||||| || |||||||| | || Sbjct 34999972 AGAGTCCGGCCATCTTCGAGCTGCTTTCCAGCAAAAATCAATCGTTGCTGGTCTGGGGGA 35000031 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 46543 | || |||||||||| || || ||| | | | | ||||| |||| || Sbjct 35000032 ATGCCCTCCTTGTCCTGAATTTTAGCCTTCACATTGTCAATAGTGTCTGAGCTC---TCT 35000088 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||| || || |||||||| || || || || || || || ||||| Sbjct 35000089 ACCTCCAAAGTAATTGTTTTGCCAGTAAGAGTCTTCACGAAAATCTGCAT 35000138 >seq1 Length=52991155 Score = 102 bits (112), Expect = 9e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || ||||| | |||||||| || |||||||| || || | ||||| | | || || Sbjct 28610800 ACTAGATGAAGCGTACTCTCTTTCTGGATATTATAATCCGCAAGAGTTCTTCCATCTTCC 28610741 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 | |||||| || || || ||||| || ||||| || | || | || |||||||| Sbjct 28610740 AACTGCTTCCCTGCAAAGATCAATCGTTGCTGATCCGGTGGAATGCCTTCCTTGTCTTGA 28610681 Query 46505 ATCTTCTTCTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 |||||| ||| | ||| | | | ||||| ||||| || |||| || |||||||| Sbjct 28610680 ATCTTCGCCTTCA-CGTTGTCGATTGTGTCAGAAGATTCAACTTCCAGGGTTATGGTTTT 28610622 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || ||||| |||||||||||||| Sbjct 28610621 CCCTGTTAGGGTTTTGACAAAGATTTGCAT 28610592 >seq7 Length=49172423 Score = 89.7 bits (98), Expect = 6e-13 Identities = 152/219 (69%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||||| || | ||| |||||||||||| ||||| || | || || ||| | Sbjct 47989837 ACGGAGCACCAAGTGGAGTGTGGACTCCTTTTGGATGTTGTAATCTGCAAGGGTACGCCC 47989778 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| || |||||||||||||| || || | ||||||||||| | || | | ||||| Sbjct 47989777 GTCTTCCAGCTGCTTGCCGGCAAAAATTAGACGCTGCTGGTCTGGAGGGATCCCTTCCTT 47989718 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGT 46554 ||| ||||| ||| | | | | || || |||| ||||| || | || Sbjct 47989717 GTCTTGAATCTTGGCCTTAACATTGTCAATTGTATCGGAGCTC---TCCACCTCAAGGGT 47989661 Query 46555 GATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| || || || || || || || |||||||||||||| Sbjct 47989660 GATTGTCTTTCCTGTGAGAGTCTTCACAAAGATTTGCAT 47989622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565222947795240