Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq8 107 1e-18 seq4 107 1e-18 seq1 96.9 2e-15 seq6 89.7 4e-13 seq7 84.2 2e-11 >seq8 Length=45569985 Score = 107 bits (118), Expect = 1e-18 Identities = 165/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || | |||||| || || | ||| | |||| |||||| || || |||||||| || Sbjct 6168624 GCCTCCCCTCAAACGAAGGACAAGATGAAGAGTGGATTCTTTCTGGATGTTATAATCTGC 6168565 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 ||| | |||| || | || || || ||||||| || | ||||| || | ||| Sbjct 6168564 CAAGGTTCTGCCATCTTCAAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGGTCTGGGGG 6168505 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTG--TTTA-ATCGTCGCTACTGTGTCTGCGCTTTC 39668 | |||||| ||||| | | | || | |||| || ||| | |||||||| ||| || Sbjct 6168504 AATGCCTTCCTTGTC-CTGAATCTTAGCCTTTACATTGTCAAT--TGTGTCTGAGCTCTC 6168448 Query 39669 CACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||| ||||||||||| ||||| || |||| || || || || |||||||| Sbjct 6168447 CACCTCCAAAGTAATCGTTTTTCCAGTTAGGGTCTTAACAAAAATCTGCAT 6168397 Score = 98.7 bits (108), Expect = 7e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 ||||| || || || ||||| |||||| || |||| || | || ||||| |||| Sbjct 6168815 TCTTTCTGAATGTTGTAATCAGCCAAAGTCCGGCCATCTTCAAGCTGCTTCCCAGCAAAG 6168756 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648 || || | ||||||||| | || | || || || || ||||||| |||| | Sbjct 6168755 ATCAACCTCTGCTGATCAGGTGGAATTCCCTCCTTATCCTGTATTTTTGCCTTAACATTA 6168696 Query 39649 GCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACG 39708 | | ||||||| ||||||||| ||||| ||||| || || || || ||||| || || Sbjct 6168695 TCGATGGTGTCTGAGCTTTCCACCTCCAATGTAATGGTCTTTCCTGTCAAAGTCTTCACA 6168636 Query 39709 AAGATCTGCATG 39720 |||||||||||| Sbjct 6168635 AAGATCTGCATG 6168624 Score = 89.7 bits (98), Expect = 4e-13 Identities = 139/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 ||||| || || || ||||| || | | || |||| || | || || || ||||| Sbjct 34999948 TCTTTCTGAATGTTGTAATCAGCAAGAGTCCGGCCATCTTCGAGCTGCTTTCCAGCAAAA 35000007 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTG--TTTA-ATC 39645 || || || ||||| || | ||| | ||| || ||||| | | |||| | || | || Sbjct 35000008 ATCAATCGTTGCTGGTCTGGGGGAATGCCCTCCTTGTC-CTGAATTTTAGCCTTCACATT 35000066 Query 39646 GTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTT 39705 ||| || ||||||| ||| || || ||||||||||||||||| || || | ||| || Sbjct 35000067 GTCAATA--GTGTCTGAGCTCTCTACCTCCAAAGTAATTGTTTTGCCAGTAAGAGTCTTC 35000124 Query 39706 ACGAAGATCTGCAT 39719 ||||| |||||||| Sbjct 35000125 ACGAAAATCTGCAT 35000138 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 ||||| || || || ||||| |||||| || |||| || | || ||||| |||| Sbjct 6169043 TCTTTCTGAATGTTGTAATCAGCCAAAGTCCGGCCATCTTCAAGCTGCTTCCCAGCAAAG 6168984 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648 || || | ||||||||| | || | ||||| ||||| |||||| || | | Sbjct 6168983 ATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTGTCCTGGATTTTTGCCTTCACATTA 6168924 Query 39649 GCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACG 39708 | | |||||||| ||||| || || || || || || ||||| || || || || || Sbjct 6168923 TCAATTGTGTCTGAACTTTCTACCTCTAAGGTGATGGTCTTACCGGTCAACGTCTTCACA 6168864 Query 39709 AAGATCTGCATG 39720 |||||||||||| Sbjct 6168863 AAGATCTGCATG 6168852 Score = 86.0 bits (94), Expect = 4e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 39563 CATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTT 39622 |||| |||||||| ||||| |||| || || | ||||||||| | || | ||||| | Sbjct 6169237 CATCCTCCAATTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCT 6169178 Query 39623 TGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAA 39682 |||| |||||| || | | | | |||||||| ||||| || || || || | Sbjct 6169177 TGTCCTGGATTTTTGCCTTCACATTATCAATTGTGTCTGAACTTTCTACCTCTAAGGTGA 6169118 Query 39683 TTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || ||||| || || || ||||| ||||||||||| Sbjct 6169117 TGGTCTTACCGGTCAACGTCTTTACAAAGATCTGCAT 6169081 >seq4 Length=56582383 Score = 107 bits (118), Expect = 1e-18 Identities = 166/233 (71%), Gaps = 3/233 (1%) Strand=Plus/Plus Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547 |||| || ||||| | | || |||||||||| ||| |||||| || |||||||||| Sbjct 31287073 CATC-CCACCTCGAAGCCTCAAAACCAAATGCAGAGTAGATTCTTTCTGGATATTATAAT 31287131 Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 | |||| | || |||| ||||| || || || | ||||||| | |||||| || | Sbjct 31287132 CAGCCAGAGTACGGCCATCTTCCAACTGCTTGCCCGCGAAAATTAGCCTCTGCTGGTCTG 31287191 Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTT 39666 || | ||| |||||||| | | | |||| || ||| | | | ||| || | ||| Sbjct 31287192 GAGGAATGCCCTCTTTGTC-CTGAATCTTTGCTTTCACGTTGTCAATTGTATCAGAACTT 31287250 Query 39667 TCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || |||||||| ||||| || || || | ||| || || || |||||||| Sbjct 31287251 TCAACCTCCAAAGTTATTGTCTTTCCGGTAAGAGTCTTCACAAAAATCTGCAT 31287303 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 ||||| || || || |||||||||||| || |||| || | || ||||| |||| Sbjct 35109127 TCTTTCTGAATGTTGTAATCGGCCAAAGTCCGGCCATCTTCAAGCTGCTTCCCAGCAAAG 35109186 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648 || || | ||||||||| | || | || || || || ||||||| |||| | Sbjct 35109187 ATCAACCTCTGCTGATCAGGTGGGATTCCCTCCTTATCCTGTATTTTTGCCTTAACATTA 35109246 Query 39649 GCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACG 39708 | | ||||||| ||||||||| ||||| ||||| || || || || ||||| || || Sbjct 35109247 TCAATGGTGTCTGAGCTTTCCACCTCCAATGTAATGGTCTTTCCTGTCAAAGTCTTCACA 35109306 Query 39709 AAGATCTGCATG 39720 |||||||||||| Sbjct 35109307 AAGATCTGCATG 35109318 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 39511 ACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCC 39570 |||||||||||||| ||| || || |||||||||||||||||| || |||| ||| Sbjct 31259816 ACCAAATGCAAAGTAGATTCCTTCTGGATATTATAATCGGCCAAAGTACGACCATCCTCC 31259875 Query 39571 AATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCAT 39630 || || || || ||||||||| | |||||| || | || | ||| ||||| || Sbjct 31259876 AACTGCTTTCCAGCAAAAATTAGTCTCTGCTGGTCAGGAGGAATGCCCTCTTTATCCTGA 31259935 Query 39631 ATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTA 39690 |||||| || | | | | ||| || | || || || |||||||| || || || Sbjct 31259936 ATTTTTGCCTTCACATTATCAATTGTATCAGAACTCTCAACCTCCAAAGTTATGGTCTTT 31259995 Query 39691 CCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || | || || || || |||||||| Sbjct 31259996 CCAGTAAGGGTCTTAACAAAAATCTGCAT 31260024 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 ||||| || || |||||||| |||||| || |||| || | || ||||| |||| Sbjct 36295201 TCTTTCTGAATGTTATAATCAGCCAAAGTCCGGCCATCTTCAAGCTGCTTCCCAGCAAAG 36295142 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648 || || | ||||||||| | || | || || || || |||||| |||| | Sbjct 36295141 ATCAACCTCTGCTGATCTGGTGGGATTCCCTCCTTATCCTGTATTTTAGCCTTAACATTA 36295082 Query 39649 GCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACG 39708 | | ||||| | ||||||||| ||||| ||||| || || || || ||||| || || Sbjct 36295081 TCAATGGTGTCAGAGCTTTCCACCTCCAATGTAATGGTCTTTCCTGTCAAAGTCTTCACA 36295022 Query 39709 AAGATCTGCATG 39720 |||||||||||| Sbjct 36295021 AAGATCTGCATG 36295010 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 39505 CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCA 39564 |||| |||||||||| |||| ||| ||||| ||||||||||| || | | | || Sbjct 31287545 CGCAAAACCAAATGCAGAGTGGATTCCTTTTGGATATTATAATCAGCAAGGGTCCTTCCA 31287604 Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG 39624 || || | ||||||||| |||| || | | ||||||||| | || | |||||| || Sbjct 31287605 TCTTCAAGTTGTTTCCCTGCAAAGATAAGTCTCTGCTGATCAGGAGGGATGCCTTCCTTA 31287664 Query 39625 TCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATT 39684 || || || ||| | | | | || |||| || || || ||||||||||| Sbjct 31287665 TCCTGAATCTTAGCTTTCACATTATCAATAGTATCTGAACTCTCAACCTCCAAAGTAATA 31287724 Query 39685 GTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| || || | || ||||| || || ||||| Sbjct 31287725 GTTTTTCCGGTAAGGGTCTTTACAAAAATTTGCAT 31287759 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| |||| ||| ||||| || | || | ||| ||| ||||| || || ||||| || Sbjct 31288216 GCCACCTCTCAATCGCAGCACAAGGTGAAGGGTGGATTCCTTTTGGATGTTGTAATCCGC 31288275 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 | ||| |||| ||||||||||| || |||| || | | |||||||| | || Sbjct 31288276 AAGGGTGCGGCCATCTTCCAATTGTTTACCAGCAAATATAAGCCTTTGCTGATCGGGAGG 31288335 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCA 39670 | ||||| ||||| || || ||||| ||| | ||| || || | || |||| Sbjct 31288336 AATACCTTCCTTGTCTTGAATCTTAGCTTTAA-CGTTGTCTATGGTATCAGAACTCTCCA 31288394 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || | || || ||||| || || || ||||| || ||||| ||||| Sbjct 31288395 CCTCGAGGGTGATAGTTTTGCCAGTCAATGTTTTCACAAAGATTTGCAT 31288443 >seq1 Length=52991155 Score = 96.9 bits (106), Expect = 2e-15 Identities = 164/234 (70%), Gaps = 3/234 (1%) Strand=Plus/Minus Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547 |||| || || ||||| | ||| || | ||| | || || ||||| || |||||||||| Sbjct 28610822 CATC-CCACCGCGCAACCTCAGAACTAGATGAAGCGTACTCTCTTTCTGGATATTATAAT 28610764 Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 | || | | | | |||| ||||| || ||||| |||| || || || |||||||||| Sbjct 28610763 CCGCAAGAGTTCTTCCATCTTCCAACTGCTTCCCTGCAAAGATCAATCGTTGCTGATCCG 28610704 Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTT 39666 || | |||||| ||||| || || || | ||| | | | |||||| | | Sbjct 28610703 GTGGAATGCCTTCCTTGTCTTGAATCTTCGCCTTCA-CGTTGTCGATTGTGTCAGAAGAT 28610645 Query 39667 TCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || || |||| || || ||||| || |||| ||||| || ||||| |||||| Sbjct 28610644 TCAACTTCCAGGGTTATGGTTTTCCCTGTTAGGGTTTTGACAAAGATTTGCATG 28610591 >seq6 Length=35275713 Score = 89.7 bits (98), Expect = 4e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 39563 CATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTT 39622 |||| |||||||| ||||| |||| || || | ||| ||||| | || | ||||| | Sbjct 24039923 CATCCTCCAATTGCTTCCCAGCAAAGATCAACCTCTGTTGATCTGGTGGGATTCCTTCCT 24039864 Query 39623 TGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAA 39682 |||| |||||| |||| | | | ||||||| |||||||| ||||| |||| Sbjct 24039863 TGTCCTGGATTTTTGCCTTAACATTATCAATGGTGTCTGAACTTTCCACCTCCAATGTAA 24039804 Query 39683 TTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || || || || ||||| || || ||||||||||| Sbjct 24039803 TGGTCTTTCCTGTCAAAGTCTTCACAAAGATCTGCAT 24039767 >seq7 Length=49172423 Score = 84.2 bits (92), Expect = 2e-11 Identities = 116/159 (73%), Gaps = 4/159 (3%) Strand=Plus/Minus Query 39563 CATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTT 39622 |||| |||||||| ||||| |||| || || | ||||||||| | || | || || | Sbjct 47990234 CATCCTCCAATTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCCTCCT 47990175 Query 39623 TGTCGCATATTTTTTG-TTTA-ATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGT 39680 |||| |||||| |||| || ||| | ||||| | ||| || || |||||||| Sbjct 47990174 TGTCCTGTATTTTAGCCTTTACATTGTCAATC--GTGTCCGAGCTCTCTACCTCCAAAGT 47990117 Query 39681 AATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||||| || || || | |||||||| || |||||||| Sbjct 47990116 AATTGTCTTTCCTGTAAGGGTTTTTACAAAAATCTGCAT 47990078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347360341188971