Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq276 154 2e-32 seq7 154 2e-32 seq8 150 2e-31 seq1 147 3e-30 seq2 116 5e-21 seq4 95.1 2e-14 seq3 91.5 2e-13 >seq276 Length=24472 Score = 154 bits (170), Expect = 2e-32 Identities = 206/285 (72%), Gaps = 5/285 (2%) Strand=Plus/Plus Query 102048 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAA 102107 ||||| || | ||||| | ||| |||||| ||||| | | ||| | || || | Sbjct 22727 CTCATTGAAACATATATAAGCGATTCTGCTGAAAAGAATCGCTTATTTCATGCAATTGAG 22786 Query 102108 ACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCG 102167 ||| |||||||||| || || || |||||||| ||||| ||| ||||| ||| | Sbjct 22787 ACAATTCCATGTATCGCGAAAAAGGCTGATTGGGCAATGAAATGGATTGATTCAA----G 22842 Query 102168 CG-TTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 102226 || ||| |||||||| || || | |||||||| ||||| || || || |||||||| || Sbjct 22843 CGATTCTTTTGCTGAAAGAATCGTTGCATTTGCTTGTGTAGAAGGAATTTTCTTCTCCGG 22902 Query 102227 TTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTC 102286 ||| ||||| |||| ||| | || ||||| ||| | |||||||| | ||||| Sbjct 22903 AAGCTTTTGCGCGATTTTCTGGTTGAAAAAGCGCGGTTTAATGCCAGGGTTAACATTCTC 22962 Query 102287 CAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 ||||||||||| || |||||||| || || ||| || ||||| Sbjct 22963 AAACGAGCTTATTTCACGTGACGAAGGTCTGCACTGTGATTTTGC 23007 >seq7 Length=49172423 Score = 154 bits (170), Expect = 2e-32 Identities = 206/285 (72%), Gaps = 5/285 (2%) Strand=Plus/Minus Query 102048 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAA 102107 ||||| || | ||||| | ||| |||||| ||||| | | ||| | || || | Sbjct 10197361 CTCATTGAAACATATATAAGCGATTCTGCTGAAAAGAATCGCTTATTTCATGCAATTGAG 10197302 Query 102108 ACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCG 102167 ||| |||||||||| || || || |||||||| ||||| ||| ||||| ||| | Sbjct 10197301 ACAATTCCATGTATCGCGAAAAAGGCTGATTGGGCAATGAAATGGATTGATTCAA----G 10197246 Query 102168 CG-TTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 102226 || ||| |||||||| || || | |||||||| ||||| || || || |||||||| || Sbjct 10197245 CGATTCTTTTGCTGAAAGAATCGTTGCATTTGCTTGTGTAGAAGGAATTTTCTTCTCCGG 10197186 Query 102227 TTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTC 102286 ||| ||||| |||| ||| | || ||||| ||| | |||||||| | ||||| Sbjct 10197185 AAGCTTTTGCGCGATTTTCTGGTTGAAAAAGCGCGGTTTAATGCCAGGGTTAACATTCTC 10197126 Query 102287 CAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 ||||||||||| || |||||||| || || ||| || ||||| Sbjct 10197125 AAACGAGCTTATTTCACGTGACGAAGGTCTGCACTGTGATTTTGC 10197081 Score = 91.5 bits (100), Expect = 2e-13 Identities = 170/248 (69%), Gaps = 4/248 (2%) Strand=Plus/Plus Query 15917 ATCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTATCAAA 15976 |||||| || ||| | ||| || || || || || | || ||| || | ||| ||| Sbjct 2726576 ATCAAGAATTTCAGGTCTATTAGTAGCAGCAATAACTATAACACCAGTATTACTATTAAA 2726635 Query 15977 ACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 16036 ||||||||| || ||||| | ||| || | |||||||| | |||||||||| || Sbjct 2726636 ACCATCCATTTCAGTCAACAACTGATTCAATGTTTGTTCTCTTTCATCATTCCCTCCACC 2726695 Query 16037 ACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGG 16096 | ||||| || | || | || || ||||| ||||||||||| || || | || || Sbjct 2726696 AATACCAGTACCTCTCTGTCTCCCTACAGCATCTATCTCATCAATAAATACCAAACAAGG 2726755 Query 16097 TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTG--GCGCCCACACCAACA 16154 | |||||| || | ||| | ||| | ||| |||| || || ||||| ||| Sbjct 2726756 TGAATTTTCTTTTGCCTTATTAAACAAATCTC--TCACTCTTGAAGCACCAACACCGACA 2726813 Query 16155 AACATCTC 16162 |||||||| Sbjct 2726814 AACATCTC 2726821 >seq8 Length=45569985 Score = 150 bits (166), Expect = 2e-31 Identities = 434/658 (66%), Gaps = 11/658 (2%) Strand=Plus/Minus Query 101967 GAGGTGCAATCCTCTGAAGCGAGATCTTTCTATGCGTATCAATGTCATAATGAAATGGTG 102026 || || ||| |||||||||| | ||||||| | || |||| || ||||| | Sbjct 25025934 GAAGTTCAAATCTCTGAAGCGCGTGCTTTCTACGGGTTTCAAATCGCTATTGAAAACATC 25025875 Query 102027 CATGGGGAGACATACAGTAAACTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAG 102086 || |||| || | ||| | || | |||||| | ||| |||||| ||||| Sbjct 25025874 CACTCAGAGATGTATTCTCTTCTCCTCGAAACGTATATAAGCGATTCTGCTGAAAAGAAT 25025815 Query 102087 CAGCTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATG 102146 | | ||| | || || | ||| |||| |||||| |||||||| ||||||||| || Sbjct 25025814 CGATTATTTCACGCAATTGACACAATTCCGTGTATTGCTAAGAAAGCTGATTGGGCTTTG 25025755 Query 102147 AAGTGGTTTGATACAAAGTCGCG-TTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGT 102205 || ||| | ||| ||| ||| ||| ||||| || || || | || || || ||||| Sbjct 25025754 AAATGGATCGATTCAA----GCGATTCTTTTGCAGAAAGAATCGTTGCTTTCGCTTGTGT 25025699 Query 102206 TGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCT 102265 ||| || || |||||||| || |||||| || |||| ||| | || || || ||| | Sbjct 25025698 TGAAGGAATTTTCTTCTCCGGAAGCTTCTGTGCGATTTTCTGGTTGAAAAAACGCGGTTT 25025639 Query 102266 CATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGA 102325 ||||| || | ||||| ||||||||||| || || ||||| || | ||| || Sbjct 25025638 AATGCCGGGATTAACTTTCTCAAACGAGCTTATTTCACGCGACGAAGGCTTACACTGTGA 25025579 Query 102326 GTTTGCGGTGGAACTT-TTCAAATTATTGCGTATTAAACCAACGACTGAGACTATTCATT 102384 ||||| || || | | |||||||| |||| | || ||| | Sbjct 25025578 TTTTGC-TTGTTTGTTATACTCGCTATTGCGTCAGAAACTGAGTACAGAGCGCGTGGTGA 25025520 Query 102385 CTATTGTTAAGGAAGCCGTTGAGATTGAGAAGGGA-TTCATATTGGATGCCCTTCCATGC 102443 |||||| || || ||||||||||| |||||| || ||| || || ||||| ||| Sbjct 25025519 AGATTGTTCGTGATGCGGTTGAGATTGA-AAGGGAGTTTGTATGCGACGCGCTTCCTTGC 25025461 Query 102444 GCTCTCATCGGTATGAATTCTGAAAAGATGTCCGAATATATTGAGTATGTATCTGATAGA 102503 || | | || ||||| |||| |||| | |||||||||| ||| ||||||| Sbjct 25025460 GCGTTGGTTGGGATGAACGGTGAATTGATGAGTCAGTATATTGAGTTTGTTGCTGATAGG 25025401 Query 102504 TTGTTGAAGCAGATCGG-GGTGCCTCCAATTTGGAACTCCAAGAATCCATTTGACTTCAT 102562 || ||| || | || ||| | ||| || ||||||||||||| | || Sbjct 25025400 TTATTGGGTGAGCTTGGTTGTG-AGAAAGTTTATAATGTTCAGAATCCATTTGATTGGAT 25025342 Query 102563 GGAGAACATTAGCCTCGACGGGAAGACAAACTTCTTCGAAAAGAGGGTTGGGGACTAT 102620 ||| ||| || | ||||| || || ||||| || ||| | |||||||| ||| Sbjct 25025341 GGATTTGATTTCGCTTCAGGGGAAAACCAATTTCTTTGAGAAGCGCGTTGGGGAGTAT 25025284 Score = 93.3 bits (102), Expect = 5e-14 Identities = 102/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 184557 TTGGAATA--GGTGCAAATGATGTTGCCAATGCATTCGCAACATCAGTTGGATCAGGTGC 184614 |||||| | ||||| ||||||||||| |||||| | | ||| ||||||||||| ||||| Sbjct 29052992 TTGGAACATTGGTGCTAATGATGTTGCAAATGCAATGGGAACTTCAGTTGGATCTGGTGC 29053051 Query 184615 TTTGAAAGTTAAGCACGCAGTGCCACTCGCGGCTGTGTGTGAGTTTTCGGGGTCTCTGTT 184674 ||| | ||| ||| || ||| || || |||| |||||||| ||| | |||| Sbjct 29053052 ATTGTCACTTAGGCAAGCTGTGTTGACAGCTGCAGTGTTGGAGTTTTCAGGGGCATTGTT 29053111 Query 184675 TATGGGAAGTCATGT 184689 ||||||| |||||| Sbjct 29053112 GATGGGAACTCATGT 29053126 >seq1 Length=52991155 Score = 147 bits (162), Expect = 3e-30 Identities = 198/274 (72%), Gaps = 5/274 (2%) Strand=Plus/Plus Query 102048 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAA 102107 ||| | || | |||||| | ||| ||||| ||||| | | ||| | || || || Sbjct 19457238 CTCCTCGAAACGTATATAAGCGATTCCGCTGAAAAGAATCGCTTATTTCATGCAATTGAA 19457297 Query 102108 ACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCG 102167 ||| |||||||||| |||||||| |||||||| ||||| ||| | ||| ||| | Sbjct 19457298 ACAATTCCATGTATCGCGAAGAAAGCTGATTGGGCGATGAAATGGATCGATTCAA----G 19457353 Query 102168 CG-TTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 102226 || ||| ||||| || || || | || ||||| |||||||| || ||||| ||||| || Sbjct 19457354 CGATTCTTTTGCAGAAAGAATCGTTGCGTTTGCTTGTGTTGAAGGAATCTTTTTCTCCGG 19457413 Query 102227 TTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTC 102286 |||||| || |||| ||| | || ||||| ||| | ||||| || | |||||| Sbjct 19457414 AAGCTTCTGTGCGATTTTCTGGTTGAAAAAGCGCGGTTTAATGCCGGGATTAACCTTCTC 19457473 Query 102287 CAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 102320 ||||||||||| || || ||||| ||| | ||| Sbjct 19457474 AAACGAGCTTATTTCACGCGACGAAGGATTGCAC 19457507 >seq2 Length=45729672 Score = 116 bits (128), Expect = 5e-21 Identities = 304/460 (66%), Gaps = 8/460 (2%) Strand=Plus/Minus Query 15918 TCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTATCAAAA 15977 ||||| |||||| | | || ||||| || ||||||| || || || | || || Sbjct 15379698 TCAAGAATATCAGCCCTGTTGGTTGCTGCAATGACAATGATTCCAGTATTACCCTCGAAT 15379639 Query 15978 CCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 16037 |||||||| ||||||||||| ||||| | || ||||| | |||||| ||| || | Sbjct 15379638 CCATCCATTTCTGTCAAAAGTTGGTTGAGGGTCTGTTCTCTTTCATCGTTCCCT---CCA 15379582 Query 16038 CCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 16094 ||| |||| | |||||| ||||||| |||||||| ||||||| || || || || Sbjct 15379581 CCAATTCCAGTGCCTCGTTGCCTTCCCACAGCATCAATTTCATCAACAAAAACAATACAA 15379522 Query 16095 GGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACA 16154 || || || || || || | ||| || || || || || | ||| ||| Sbjct 15379521 GGAGCGTTCTCTTTGGCCTTTTTGAATAAATCGCGAACTCGAGAAGCACCAATACCGACA 15379462 Query 16155 AACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGC 16213 |||||||| ||||| | | | | | |||| || || |||||| | |||||| || Sbjct 15379461 AACATCTCAACAAACTCAGAACCTG-AGATTGAGAAAAATGGGACACCTGCTTCACCGGC 15379403 Query 16214 AATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCG 16273 ||| || || | || ||||| || || ||||| ||| ||| || | ||| Sbjct 15379402 AATAGCCTTAGCTAATAGTGTCTTCCCAGTTCCTGGGGGACCAATGAGAAGAACCCCTTT 15379343 Query 16274 TGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATCTC 16333 ||| || || ||| | || | | |||||||| | || ||||| ||||| | ||| Sbjct 15379342 TGGTATGCGAGCCCCAATAGCAGTGAACCTCTCAGGCTTTTTTAGAAACTCCACTACCTC 15379283 Query 16334 TTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATCG 16373 || || | ||||| | || | ||| |||||||| Sbjct 15379282 CATAAAATCCTGCTTGGCTTCATCTACCCCGGCAACATCG 15379243 >seq4 Length=56582383 Score = 95.1 bits (104), Expect = 2e-14 Identities = 271/408 (66%), Gaps = 14/408 (3%) Strand=Plus/Plus Query 15972 TCAAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT 16031 ||||| || ||||| ||||||||||| ||||| | || ||||| | ||| |||||| || Sbjct 38680039 TCAAATCCGTCCATTTCTGTCAAAAGTTGGTTGAGGGTCTGTTCTCTTTCGTCATTCCCT 38680098 Query 16032 GGCATACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACG 16088 |||| |||| | | ||| |||| || || ||||| ||||||| ||||| Sbjct 38680099 ---CCACCAATTCCAGTCCCTCTTTGTCTTCCAACAGCGTCAATTTCATCAACAAAGACA 38680155 Query 16089 ATGCATGGTTGATTTTCGCGAG-CGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCAC 16147 ||||| || ||| || || | ||| || || || || ||||| || || | Sbjct 38680156 ATGCAAGGAGCATTCTCTTTAGCCTTCTTGAACAAG-TCACGGACACGAGAAGCACCAAT 38680214 Query 16148 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATT 16206 ||||||||||||||| ||||| | | | | | || | || || || ||| || || Sbjct 38680215 ACCAACAAACATCTCAACAAACTCAGAACCTG-ATATAGAGAAAAACGGAACACCAGCTT 38680273 Query 16207 CACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGG 16266 |||| ||||| || ||| | | |||||| || || ||||| ||| | || || Sbjct 38680274 CACCAGCAATAGCCTTGGCTAACAAAGTCTTTCCAGTTCCTGGAGGACCAACAAGAAGAA 38680333 Query 16267 CACCTCGTGGAATCTTGGCGCCACTTCCAAAGT--ATCTCTCAGGTTGCTTAAGAAAATC 16324 | ||| ||||| || ||| | |||| | |||||||| | ||| ||||| || Sbjct 38680334 CTCCTTTCGGAATGCGAGCACCA--ACAGAAGTGAACCTCTCAGGCTTCTTGAGAAATTC 38680391 Query 16325 CACAATCTCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 16372 || | ||| || || | ||||| | || | ||| ||||||| Sbjct 38680392 AACCACCTCCATAAAATCCTGCTTGGCTTCATCCACCCCAGCAACATC 38680439 >seq3 Length=55515152 Score = 91.5 bits (100), Expect = 2e-13 Identities = 143/199 (72%), Gaps = 8/199 (4%) Strand=Plus/Minus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||| ||||||||||| ||||||||||| |||||||| ||||||| |||||||| | Sbjct 53796586 AAATCCATCCATCTCAGTCAAAAGCTGATTAATAGTCTGTTCCCTCTCATCATTTCCACC 53796527 Query 16034 CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 16093 | |||||| | | || | || || ||||||||||||||||| || || ||||| Sbjct 53796526 ACCAAGACCAGCTCCTCTCTGTCTCCCAACAGCATCAATCTCATCAATAAACACAATGCA 53796467 Query 16094 TGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCCCACAC 16149 ||| |||| || || ||||| | ||||| || || || | || || || | Sbjct 53796466 CGGT--GCCTTCGACTTCGCCTTCTCAAACAAATCCC-TA-ACTCTAGAAGCACCAACTC 53796411 Query 16150 CAACAAACATCTCCACAAA 16168 | ||||||| |||||||| Sbjct 53796410 CCACAAACAGTTCCACAAA 53796392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620725430454640