Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq2 102 1e-16 seq276 82.4 9e-11 seq7 82.4 9e-11 seq3 82.4 9e-11 >seq2 Length=45729672 Score = 102 bits (112), Expect = 1e-16 Identities = 310/473 (66%), Gaps = 16/473 (3%) Strand=Plus/Minus Query 11505 ATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCGGC 11564 ||| ||||| || || | | || |||| ||||||||||| | | ||| || || || Sbjct 15379729 ATCAAAACGTCCCGGTCTCAATAAAGCAGAGTCAAGAATATCAGCCCTGTTGGTTGCTGC 15379670 Query 11565 AATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTGAT 11624 |||||| | || ||||| | | ||||| || ||||||||||| | ||| ||||||| Sbjct 15379669 AATGACAATGATTCCAGTATTACCCTCGAATCCATCCATTTCTGTCAAAAGTTGGTTGAG 15379610 Query 11625 CGTCTGTTCACGCTCATCGTTGGAGGGCAT--ACCA---CC--TGCCGAACGCTTCTTAC 11677 |||||||| | |||||||| | | |||| || |||| || | | | | Sbjct 15379609 GGTCTGTTCTCTTTCATCGTT-----CCCTCCACCAATTCCAGTGCC--TCGTTGCCTTC 15379557 Query 11678 CGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGA 11737 | ||||| ||||| ||||| | || || ||||| || ||| | |||| || || Sbjct 15379556 CCACAGCATCAATTTCATCAACAAAAACAATACAAGGAGCGTTCTCTTTGGCCTTTTTGA 15379497 Query 11738 AAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAG 11797 | | || || || || || |||| ||| || ||||||||||| || | | | | Sbjct 15379496 ATAAATCGCGAACTCGAGAAGCACCAATACCGACAAACATCTCAACAAACTCAGAACCTG 15379437 Query 11798 AACACTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTA 11856 | | ||| | || || ||| | ||||| || || || ||| | || ||||| Sbjct 15379436 -AGATTGAGAAAAATGGGACACCTGCTTCACCGGCAATAGCCTTAGCTAATAGTGTCTTC 15379378 Query 11857 CCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCAAAG 11916 || || || || | |||| |||||| | || || || || ||| | || | Sbjct 15379377 CCAGTTCCTGGGGGACCAATGAGAAGAACCCCTTTTGGTATGCGAGCCCCAATAGCAGTG 15379318 Query 11917 TAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGC 11969 | | ||||||||| || || || ||||| | |||| || |||| |||||| Sbjct 15379317 AACCTCTCAGGCTTTTTTAGAAACTCCACTACCTCCATAAAATCCTGCTTGGC 15379265 >seq276 Length=24472 Score = 82.4 bits (90), Expect = 9e-11 Identities = 276/420 (66%), Gaps = 11/420 (3%) Strand=Plus/Minus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || ||||| || || || || ||||| || ||| | || ||||| | || Sbjct 22995 TGCAGACCTTCGTCACGTGAAATAAGCTCGTTTGAGAATGTTAACCCTGGCATTAAACCG 22936 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | || || | ||| || || || ||||| ||||| || ||||| || || || ||||| Sbjct 22935 CGCTTTTTCAACCAGAAAATCGCGCAAAAGCTTCCGGAGAAGAAAATTCCTTCTACACAA 22876 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAAAGG-TCGAGACTTG--TCGAACCACTTGAGAGCC 119684 || || || | | | |||||||||| ||| |||| || | ||| || | ||| Sbjct 22875 GCAAATGCAACGATTCTTTCAGCAAAAGAATCG---CTTGAATCAATCCATTTCATTGCC 22819 Query 119685 CAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAGTTGCTTCTTT 119744 || | ||||| | | || || || | || | || || | || | | |||||| Sbjct 22818 CAATCAGCCTTTTTCGCGATACATGGAATTGTCTCAATTGCATGAAATAAGCGATTCTTT 22759 Query 119745 TCAGCACCATCCTTAATATATTTATCAATGAGTTTAGAGTAGGTCTCACCATGAACCATT 119804 |||||| ||| | |||||| | |||||||| ||||| ||||| ||| | || Sbjct 22758 TCAGCAGAATCGCTTATATATGTTTCAATGAGAAGGGAGTACATCTCAGAATGGATGTTT 22699 Query 119805 TCATTGTGTGA-CTGATAGGCATAAAATGAGCGAGCTTCGGAAATTTGCACTTC-GTCAG 119862 ||| | || | || | |||| || | || |||||||| ||||| ||||| ||| Sbjct 22698 TCAAT-TGCAATTTGGAAACCATAGAAGGCACGTGCTTCGGAGATTTGGACTTCTTTCAT 22640 Query 119863 CAAAATTGTTGTTGATATTTTCAAAAACAATTCCATCGGATCCAGCGAAGAATGCTAAGA 119922 || || | | |||||||| |||||||| || || | |||||||| || |||| Sbjct 22639 GAATCTT-CCGGCAAGATTTTCAAGGACAATTCCGTCTGAGGCGGCGAAGAAGGC-AAGA 22582 >seq7 Length=49172423 Score = 82.4 bits (90), Expect = 9e-11 Identities = 276/420 (66%), Gaps = 11/420 (3%) Strand=Plus/Plus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || ||||| || || || || ||||| || ||| | || ||||| | || Sbjct 10197093 TGCAGACCTTCGTCACGTGAAATAAGCTCGTTTGAGAATGTTAACCCTGGCATTAAACCG 10197152 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | || || | ||| || || || ||||| ||||| || ||||| || || || ||||| Sbjct 10197153 CGCTTTTTCAACCAGAAAATCGCGCAAAAGCTTCCGGAGAAGAAAATTCCTTCTACACAA 10197212 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAAAGG-TCGAGACTTG--TCGAACCACTTGAGAGCC 119684 || || || | | | |||||||||| ||| |||| || | ||| || | ||| Sbjct 10197213 GCAAATGCAACGATTCTTTCAGCAAAAGAATCG---CTTGAATCAATCCATTTCATTGCC 10197269 Query 119685 CAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAGTTGCTTCTTT 119744 || | ||||| | | || || || | || | || || | || | | |||||| Sbjct 10197270 CAATCAGCCTTTTTCGCGATACATGGAATTGTCTCAATTGCATGAAATAAGCGATTCTTT 10197329 Query 119745 TCAGCACCATCCTTAATATATTTATCAATGAGTTTAGAGTAGGTCTCACCATGAACCATT 119804 |||||| ||| | |||||| | |||||||| ||||| ||||| ||| | || Sbjct 10197330 TCAGCAGAATCGCTTATATATGTTTCAATGAGAAGGGAGTACATCTCAGAATGGATGTTT 10197389 Query 119805 TCATTGTGTGA-CTGATAGGCATAAAATGAGCGAGCTTCGGAAATTTGCACTTC-GTCAG 119862 ||| | || | || | |||| || | || |||||||| ||||| ||||| ||| Sbjct 10197390 TCAAT-TGCAATTTGGAAACCATAGAAGGCACGTGCTTCGGAGATTTGGACTTCTTTCAT 10197448 Query 119863 CAAAATTGTTGTTGATATTTTCAAAAACAATTCCATCGGATCCAGCGAAGAATGCTAAGA 119922 || || | | |||||||| |||||||| || || | |||||||| || |||| Sbjct 10197449 GAATCTT-CCGGCAAGATTTTCAAGGACAATTCCGTCTGAGGCGGCGAAGAAGGC-AAGA 10197506 >seq3 Length=55515152 Score = 82.4 bits (90), Expect = 9e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 109695 ATCGTCAACAAGATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTA 109754 ||||| || |||||||||||| || || || || |||||| || || | || ||| Sbjct 2059829 ATCGTGAAGAAGATGCTTGTTCACTACAACGAACTCACCACTTAGAGTTCTGCGATTGTA 2059888 Query 109755 GATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGC 109814 ||| |||| || || ||||| |||||||| || ||||| || ||||| || || || Sbjct 2059889 GATATTAGAAGTATATGGTTCAAAACACTCGTTATTGCCAAGAATTTGACTGGTAGATGC 2059948 Query 109815 TGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACG 109874 || ||||| || || | ||||| || || | |||| || | || | ||| || Sbjct 2059949 AGTTGGCATAGGGGCAACAAGAAGTGAATTCCGTACACCCGTCTTTGATATCATCTCCCG 2060008 Query 109875 CATTGCGTCCCAATC 109889 | ||| ||||||| Sbjct 2060009 AAGTGCACCCCAATC 2060023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588959898868600