Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq276 152 6e-32 seq7 152 6e-32 seq2 138 1e-27 seq3 129 7e-25 seq8 107 2e-18 >seq276 Length=24472 Score = 152 bits (168), Expect = 6e-32 Identities = 410/617 (66%), Gaps = 15/617 (2%) Strand=Plus/Minus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| || ||| ||||| || || || |||||||| || |||||||| || ||| Sbjct 23007 GCAAAATCACAGTGCAGACCTTCGTCACGTGAAATAAGCTCGTTTGAGAATGTTAACCCT 22948 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393 ||||| | ||| ||||| |||||||| |||| ||||| || ||||||||||| || Sbjct 22947 GGCATTAAACCGCGCTTTTTCAACCAGAAAATCGCGCAAAAGCTTCCGGAGAAGAAAATT 22888 Query 117394 CCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAAC 117453 || || ||||| ||||| |||| | | || || || || | ||| |||| | Sbjct 22887 CCTTCTACACAAGCAAATGCAACGATTCTTTCAGCAAAAGA---ATCGCTTGAATCAATC 22831 Query 117454 CATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAAT 117513 |||||||||||||| | ||||| ||| | |||||||| | || | || || | |||| Sbjct 22830 CATTTCATTGCCCAATCAGCCTTTTTCGCGATACATGGAATTGTCTCAATTGCATGAAAT 22771 Query 117514 AACTGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTCG 117573 || | |||||||||| ||| | || ||| | ||||| | || || | || Sbjct 22770 AAGCGATTCTTTTCAGCAGAATCGCTTATATATGTTTCAATGAGAAGGGAGTACATCTCA 22711 Query 117574 CCATGAACCATTTCATTATGGCA--TTGATATGCGTAGAATGAGCGCGCTTCGCTTATCT 117631 ||| | ||||| || ||| ||| | | ||||| | || |||||| || | Sbjct 22710 GAATGGATGTTTTCA--ATTGCAATTTGGAAACCATAGAAGGCACGTGCTTCGGAGATTT 22653 Query 117632 GCACTTCATCCGCAAAATTGTTATTG--ATATTCTCAAAAACAATTCCATCGGACCCAGC 117689 | ||||| | || | | || | | ||| |||| |||||||| || || | || Sbjct 22652 GGACTTCTT--TCATGAATCTTCCGGCAAGATTTTCAAGGACAATTCCGTCTGAGGCGGC 22595 Query 117690 AAAGAATGCCAGGATGTACTTTATGAATTTCTTTTCATTTTCATTCAGGGTCTTCCAGTC 117749 ||||| || || | || ||||| | ||| || | ||| | ||||||| Sbjct 22594 GAAGAAGGCAAGAACGTGAGAGATGAAGTGGCGTTCGCCGTCTGTGAGGTTGTTCCAGTG 22535 Query 117750 GTCAAGATCTTTGGACAAATCAACTTCTTCCGCAGTCCA-ATTGCTCATTTGAGCCTTTT 117808 | ||||| ||| | |||||||||||| || ||||| | || || | || |||| Sbjct 22534 CTTGAGATCGGAGGAAAGATCAACTTCTTCGGCGGTCCAGAATGAGGCTTCG-GCTTTTT 22476 Query 117809 TATAGAGTTCCCAGAGTTGTGGATACTTCAGGGGGAAGACTGTA-AATCTGTTTAGGGTG 117867 | || | |||||||| || ||| || | | ||||| | || | |||| || | || | Sbjct 22475 TGTACATTTCCCAGATTTTTGGGTATTGGATTGGGAACA-TGCAGAATCGGTCTGGGTTT 22417 Query 117868 GGGGCCAGAATAGGTTC 117884 || || |||| ||||| Sbjct 22416 GGTGCGAGAAGTGGTTC 22400 >seq7 Length=49172423 Score = 152 bits (168), Expect = 6e-32 Identities = 410/617 (66%), Gaps = 15/617 (2%) Strand=Plus/Plus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| || ||| ||||| || || || |||||||| || |||||||| || ||| Sbjct 10197081 GCAAAATCACAGTGCAGACCTTCGTCACGTGAAATAAGCTCGTTTGAGAATGTTAACCCT 10197140 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393 ||||| | ||| ||||| |||||||| |||| ||||| || ||||||||||| || Sbjct 10197141 GGCATTAAACCGCGCTTTTTCAACCAGAAAATCGCGCAAAAGCTTCCGGAGAAGAAAATT 10197200 Query 117394 CCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAAC 117453 || || ||||| ||||| |||| | | || || || || | ||| |||| | Sbjct 10197201 CCTTCTACACAAGCAAATGCAACGATTCTTTCAGCAAAAGA---ATCGCTTGAATCAATC 10197257 Query 117454 CATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAAT 117513 |||||||||||||| | ||||| ||| | |||||||| | || | || || | |||| Sbjct 10197258 CATTTCATTGCCCAATCAGCCTTTTTCGCGATACATGGAATTGTCTCAATTGCATGAAAT 10197317 Query 117514 AACTGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTCG 117573 || | |||||||||| ||| | || ||| | ||||| | || || | || Sbjct 10197318 AAGCGATTCTTTTCAGCAGAATCGCTTATATATGTTTCAATGAGAAGGGAGTACATCTCA 10197377 Query 117574 CCATGAACCATTTCATTATGGCA--TTGATATGCGTAGAATGAGCGCGCTTCGCTTATCT 117631 ||| | ||||| || ||| ||| | | ||||| | || |||||| || | Sbjct 10197378 GAATGGATGTTTTCA--ATTGCAATTTGGAAACCATAGAAGGCACGTGCTTCGGAGATTT 10197435 Query 117632 GCACTTCATCCGCAAAATTGTTATTG--ATATTCTCAAAAACAATTCCATCGGACCCAGC 117689 | ||||| | || | | || | | ||| |||| |||||||| || || | || Sbjct 10197436 GGACTTCTT--TCATGAATCTTCCGGCAAGATTTTCAAGGACAATTCCGTCTGAGGCGGC 10197493 Query 117690 AAAGAATGCCAGGATGTACTTTATGAATTTCTTTTCATTTTCATTCAGGGTCTTCCAGTC 117749 ||||| || || | || ||||| | ||| || | ||| | ||||||| Sbjct 10197494 GAAGAAGGCAAGAACGTGAGAGATGAAGTGGCGTTCGCCGTCTGTGAGGTTGTTCCAGTG 10197553 Query 117750 GTCAAGATCTTTGGACAAATCAACTTCTTCCGCAGTCCA-ATTGCTCATTTGAGCCTTTT 117808 | ||||| ||| | |||||||||||| || ||||| | || || | || |||| Sbjct 10197554 CTTGAGATCGGAGGAAAGATCAACTTCTTCGGCGGTCCAGAATGAGGCTTCG-GCTTTTT 10197612 Query 117809 TATAGAGTTCCCAGAGTTGTGGATACTTCAGGGGGAAGACTGTA-AATCTGTTTAGGGTG 117867 | || | |||||||| || ||| || | | ||||| | || | |||| || | || | Sbjct 10197613 TGTACATTTCCCAGATTTTTGGGTATTGGATTGGGAACA-TGCAGAATCGGTCTGGGTTT 10197671 Query 117868 GGGGCCAGAATAGGTTC 117884 || || |||| ||||| Sbjct 10197672 GGTGCGAGAAGTGGTTC 10197688 Score = 102 bits (112), Expect = 1e-16 Identities = 170/246 (69%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 9224 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9283 |||||| || ||| | ||| || || || || || | || ||| || | | ||| ||| Sbjct 2726576 ATCAAGAATTTCAGGTCTATTAGTAGCAGCAATAACTATAACACCAGTATTACTATTAAA 2726635 Query 9284 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9343 ||||||||| || ||||| | || || | |||||||| | |||||||||| || Sbjct 2726636 ACCATCCATTTCAGTCAACAACTGATTCAATGTTTGTTCTCTTTCATCATTCCCTCCACC 2726695 Query 9344 ACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGG 9403 | ||||| || | || | || || ||||| ||||||||||| || || | ||| || Sbjct 2726696 AATACCAGTACCTCTCTGTCTCCCTACAGCATCTATCTCATCAATAAATACCAAACAAGG 2726755 Query 9404 TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAA 9463 | |||||| || | | ||| | ||| | || ||| || || ||||| ||||| Sbjct 2726756 TGAATTTTCTTTTGCCTTATTAAACAAATCTCTCACTCTTGAAGCACCAACACCGACAAA 2726815 Query 9464 CATCTC 9469 |||||| Sbjct 2726816 CATCTC 2726821 >seq2 Length=45729672 Score = 138 bits (152), Expect = 1e-27 Identities = 309/460 (67%), Gaps = 8/460 (2%) Strand=Plus/Minus Query 9225 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9284 ||||| |||||| | | || || || || ||||||| || || || | | || || Sbjct 15379698 TCAAGAATATCAGCCCTGTTGGTTGCTGCAATGACAATGATTCCAGTATTACCCTCGAAT 15379639 Query 9285 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9344 |||||||| ||||||||||||||||| | || ||||| | |||||| ||| || | Sbjct 15379638 CCATCCATTTCTGTCAAAAGTTGGTTGAGGGTCTGTTCTCTTTCATCGTTCCCT---CCA 15379582 Query 9345 CCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACAT 9401 ||| |||| | |||||| ||||||| |||||||| ||||||| || |||||||| Sbjct 15379581 CCAATTCCAGTGCCTCGTTGCCTTCCCACAGCATCAATTTCATCAACAAAAACAATACAA 15379522 Query 9402 GGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACA 9461 || || || ||| ||| || | ||||||||| | || || | ||| ||| Sbjct 15379521 GGAGCGTTCTCTTTGGCCTTTTTGAATAAATCGCGAACTCGAGAAGCACCAATACCGACA 15379462 Query 9462 AACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGC 9520 |||||||| ||||| | | | | | |||| || || |||||| | |||||| || Sbjct 15379461 AACATCTCAACAAACTCAGAACCTG-AGATTGAGAAAAATGGGACACCTGCTTCACCGGC 15379403 Query 9521 AATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCG 9580 ||| || || | || ||||| || || ||||| ||| ||| || | || Sbjct 15379402 AATAGCCTTAGCTAATAGTGTCTTCCCAGTTCCTGGGGGACCAATGAGAAGAACCCCTTT 15379343 Query 9581 TGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATCTC 9640 ||| || || ||| | || | | |||||||| | || ||||| ||||| | ||| Sbjct 15379342 TGGTATGCGAGCCCCAATAGCAGTGAACCTCTCAGGCTTTTTTAGAAACTCCACTACCTC 15379283 Query 9641 TTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATCG 9680 || || | ||||| | || | ||| |||||||| Sbjct 15379282 CATAAAATCCTGCTTGGCTTCATCTACCCCGGCAACATCG 15379243 >seq3 Length=55515152 Score = 129 bits (142), Expect = 7e-25 Identities = 379/576 (66%), Gaps = 11/576 (2%) Strand=Plus/Plus Query 106457 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 106516 || || || |||||||| | || || ||||| ||||| | ||| |||| | Sbjct 2060463 GGTAGTGCAATTGATGCAAGGTTACACACAGCAGTCTCTGTTGGACTTGTATACTGGATT 2060522 Query 106517 ATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTG 106576 || || || |||| || || |||||| || |||| ||||| ||||| || || | Sbjct 2060523 ATCTCAGTGCACAGATTTGATGACTTAATTGTGCCCAGATTCTGCTGGTTGCTTTTCCTA 2060582 Query 106577 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATT 106636 ||||| | |||||| | |||||||| || | || || || |||||||||| | |||| Sbjct 2060583 TTGCAAGTATCCTTAAAAAGCATGTAAGGATTTCCAGTTTCTATCTGTGACTTCAAAATT 2060642 Query 106637 GCCTTCCACACA-TCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTT 106695 || ||||| | || | | || | ||||| || || ||| | || |||| Sbjct 2060643 GCAAACCACAGAGTCCGTG-CTTGAACAATCTTTTTTGCTTTTCCTGCTTTTTCATACTG 2060701 Query 106696 TGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGG 106755 ||||| || ||||| || |||||| || | | ||| ||||| | | || Sbjct 2060702 AGTGTACAGCTTATCAAATTCTTCACCCCAACAATCTGCCAAACCAGGTGCTTCATTGGG 2060761 Query 106756 ACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTT--CATGAAAAGGTCTGGAATC 106813 ||||| || ||||||| ||| | |||| | ||| ||| || || || || | | Sbjct 2060762 GCAGAACAGGGACCATTCCCCATCG--CTCAGAGCTCTTTCCATAAAGAGATCAGGCACC 2060819 Query 106814 CACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAAC 106873 || |||| |||| | ||||| | || |||||| | || || || | | || Sbjct 2060820 CAAAGGGCGTAAAATAAATCTCGAGCACGTTGCTCTTCCTTTCCATGATTTATTTTCAAT 2060879 Query 106874 TCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTT 106933 || ||||| || | ||||| || ||||||||||| | || || || | || ||||| Sbjct 2060880 TCCAGGAAGTCAAATATATCAGCATGCCATGGCTCCAAGTACACAGCAAAAG-CACCTTT 2060938 Query 106934 CGAC--GC--CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGG 106989 | | || || | |||| ||||| || || || | || || || |||||||| || Sbjct 2060939 CCTCTTGCCTCCCCCCTGATCAACATAACGTGCAGTATCATTGAACACACGAAGCATCGG 2060998 Query 106990 AATAATACCATCTGATTGACCATTTGTCCCCCGAAT 107025 || |||||||| || |||||||| |||||||| Sbjct 2060999 AACAATACCATTAGACGTTCCATTTGTTCCCCGAAT 2061034 Score = 91.5 bits (100), Expect = 2e-13 Identities = 174/256 (68%), Gaps = 8/256 (3%) Strand=Plus/Minus Query 9224 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9283 |||||| | |||| | ||| || || || | ||||| || || | | | | ||| Sbjct 53796643 ATCAAGAACATCAGGTCTATTAGTAGCAGCCAAGACAATAACGCCCGAATTACCAGAAAA 53796584 Query 9284 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9343 ||||||||||| |||||||| || |||||||| ||||||| |||||||| | Sbjct 53796583 TCCATCCATCTCAGTCAAAAGCTGATTAATAGTCTGTTCCCTCTCATCATTTCCACCACC 53796524 Query 9344 ACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGG 9403 | |||||| | | || | || || ||||||||||||||||| || ||||| || || Sbjct 53796523 AAGACCAGCTCCTCTCTGTCTCCCAACAGCATCAATCTCATCAATAAACACAATGCACGG 53796464 Query 9404 TTGATT----TTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAA 9459 | || ||| || | ||||| | ||| | ||| || || || || || | Sbjct 53796463 TGCCTTCGACTTC----GCCTTCTCAAACAAATCCCTAACTCTAGAAGCACCAACTCCCA 53796408 Query 9460 CAAACATCTCCACAAA 9475 |||||| |||||||| Sbjct 53796407 CAAACAGTTCCACAAA 53796392 >seq8 Length=45569985 Score = 107 bits (118), Expect = 2e-18 Identities = 393/612 (64%), Gaps = 5/612 (1%) Strand=Plus/Plus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| || ||| | || || || || |||||||| || |||||||| || || Sbjct 25025573 GCAAAATCACAGTGTAAGCCTTCGTCGCGTGAAATAAGCTCGTTTGAGAAAGTTAATCCC 25025632 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393 ||||| | ||| || || |||||||| |||| || ||||| ||||||||||| || Sbjct 25025633 GGCATTAAACCGCGTTTTTTCAACCAGAAAATCGCACAGAAGCTTCCGGAGAAGAAAATT 25025692 Query 117394 CCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAAC 117453 || || ||||| || || |||| | | || || || || | ||| || | | Sbjct 25025693 CCTTCAACACAAGCGAAAGCAACGATTCTTTCTGCAAAAGA---ATCGCTTGAATCGATC 25025749 Query 117454 CATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAAT 117513 ||||||| ||||| | || ||||| ||||||| || | || | || || | |||| Sbjct 25025750 CATTTCAAAGCCCAATCAGCTTTCTTAGCAATACACGGAATTGTGTCAATTGCGTGAAAT 25025809 Query 117514 AACTGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTCG 117573 || | |||||||||| ||| | || || | || | | ||||| | || Sbjct 25025810 AATCGATTCTTTTCAGCAGAATCGCTTATATACGTTTCGAGGAGAAGAGAATACATCTCT 25025869 Query 117574 CCATGAACCATTTCATTATGGCATTGATATGCGTAGAATGAGCGCGCTTCGCTTATCTGC 117633 || | ||||| || | |||| | ||||||| | |||||||| || || Sbjct 25025870 GAGTGGATGTTTTCAATAGCGATTTGAAACCCGTAGAAAGCACGCGCTTCAGAGATTTGA 25025929 Query 117634 ACTTCATCCGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAG 117693 ||||| | | || | || ||| || | || || || ||||| | || ||| Sbjct 25025930 ACTTCTTTCATGAATCTTCCGGCGAGATTTTCGAGGACGATACCGTCGGAGGCGGCGAAG 25025989 Query 117694 AATGCCAGGATGTACTTTATGAATTTCTTTTCATTTTCATTCAGGGTCTTCCAGTCGTCA 117753 || || ||||||| ||||| | ||| || | ||| | ||||||| | | Sbjct 25025990 AAGGCGAGGATGTGAGAGATGAAGTGGCGTTCGCCGTCGGTGAGGTTGTTCCAGTGTTGA 25026049 Query 117754 AGATCTTTGGACAAATCAACTTCTTCCGCAGTCCA-ATTGCTCATTTGAGCCTTTTTATA 117812 ||||| ||| | ||| |||||||| || ||||| | | || | || ||||| || Sbjct 25026050 AGATCGGAGGAAAGATCGACTTCTTCGGCGGTCCAGAAAGAGGCTTCG-GCTTTTTTGTA 25026108 Query 117813 GAGTTCCCAGAGTTGTGGATACTTCAGGGGGAAGACTGTAAATCTGTTTAGGGTGGGGGC 117872 | |||||||| || ||| || | | ||||| | |||| || | || | || || Sbjct 25026109 CATTTCCCAGATTTTTGGGTATTGGATTGGGAACATACAGAATCGGTCTGGGTTTGGAGC 25026168 Query 117873 CAGAATAGGTTC 117884 |||| |||||| Sbjct 25026169 GAGAAGAGGTTC 25026180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589964671399880