Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_015266.1 Length=40555 Score E Sequences producing significant alignments: (Bits) Value seq701 152 1e-32 >seq701 Length=7862 Score = 152 bits (168), Expect = 1e-32 Identities = 382/575 (66%), Gaps = 4/575 (1%) Strand=Plus/Plus Query 37776 CAGCAGCTTCGCCTTGTACTCGACAAGCTGACCATCCGGCACATCGAAGCGTCGCAACCA 37835 |||||||||||| ||||| ||| | | || || | ||||| || ||| ||| Sbjct 6658 CAGCAGCTTCGCTTTGTAGCCGAATACGTCACTCTCGTCGATGTCGAACCGATGCAGCCA 6717 Query 37836 GTCATCGCTTTCCGCGGTTGTGGCGAAATACGGTGAAGCCGAGCCTGGCTGGCCAATTTG 37895 |||||||||||||| || ||| | || ||||| | || || | ||| || Sbjct 6718 TTCATCGCTTTCCGCAGTCGTGTCAAAGTACGGCGCGGCGCCCCCCATCAAGCCTCGCTG 6777 Query 37896 CAACTGCCACACGGAAGGAACGCGCACCGATTTGAGGGCCGCGTTGAGGATCACGTAGTT 37955 ||| |||| |||| | | || || | || || || ||| | |||||||||||| Sbjct 6778 CAAACGCCAGACGGTTGTGGCTCGAACAGCCTTCAGCGCATTGTTCAAGATCACGTAGTT 6837 Query 37956 GGGAGGCGGAACGGGCGGCCCGTTCTCATCGCCGTCGGTCGACGAGCCCGATTCAGGGCG 38015 | |||| || |||||||| ||| | | | |||| | || || || |||| Sbjct 6838 CGCCGGCGCGACCGGCGGCCCCTTCCCTGCCTCATCGGCTGCGCCACCAGACTC-GGGCT 6896 Query 38016 C-CGGCCAGCCTGTATCACAACGCCGCCGTTCAGATCGTAGAGCGCGTACCAGGCTGGGG 38074 | |||| ||||| || || || ||||| |||| ||||| |||||| ||||| | || | Sbjct 6897 CGGGGCCGGCCTGAATGACGACCCCGCCATTCATGTCGTACAGCGCGAACCAGTCCGGCG 6956 Query 38075 GCAGTTCGTTTCGCAGGGTATCGAGCCCGCCGGCCTTATCGAGCAGTTCCTTGTCGAGCG 38134 |||||||| ||| || | ||| ||||||| ||| || | ||| |||||| || Sbjct 6957 GCAGTTCGCTTCTTAGCGCGGCGATCCCGCCGACCTGCTCCAACAGCGACTTGTCCAGGC 7016 Query 38135 CGGTAAGCCAGCCGACCGTCTTGA-TGCCGTCACGCAGGCGTGCCGCGTGCAGTAGCGGT 38193 || ||||| ||||| || | | || |||| | | | ||||| || | ||| Sbjct 7017 ACGTGAGCCAAGACACCGTTTTCAGTTTCG-ATCGCAAGTGCGTCGCGTTGAGCAACGGG 7075 Query 38194 TCGCCAACGTCAAGGGCAATCATCTGCTTTGCGAGCTGGTATTCGGTCGGCACGTTTGCT 38253 | ||| ||||| || |||| || || ||| |||||| ||||| ||| || Sbjct 7076 TTGCCGACGTCGAGCGCAAGGTAACGCCGGGCCAGCCAGTATTCCGTCGGTGTGTTGGCC 7135 Query 38254 GCTGTTTTCGCGAGACTGAGATTCACTGCGTATCCGGCATACCCACTGACAACTTTGAGC 38313 | | || || || || |||||||| ||| |||||||||| || || || || ||| Sbjct 7136 TCGGCTTCCGTCAGGCTCAGATTCACCGCGAATCCGGCATAGCCGTTGTAGACGTTCAGC 7195 Query 38314 CGACGGGCGAAGTCTACGAACAGTTTCTGGAACGC 38348 || |||||||| || |||| | ||||||||| Sbjct 7196 CGCTTCGCGAAGTCGACAAACATCTGCTGGAACGC 7230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 129651032794198