Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_015273.1 Length=32317 Score E Sequences producing significant alignments: (Bits) Value seq701 104 5e-18 >seq701 Length=7862 Score = 104 bits (114), Expect = 5e-18 Identities = 221/319 (69%), Gaps = 21/319 (7%) Strand=Plus/Plus Query 6051 CATCACGCGCCGATATGTCTTGCCGCCGACGAGCATGATCGTTTTCGCGTCCCA----CG 6106 ||||||||||| || || |||||| ||| || ||||| |||| || || Sbjct 62 CATCACGCGCCTGTAGTTCCGGCCGCCAGCGAACAGGATCGA----GCGTGCCGGCGCCG 117 Query 6107 GCCACGC-GACCGAATCGAACGCCGGC-AGATCGGCGAGCATTTCGTCGGCGCGCGCGTC 6164 ||||||| | | | || ||| || | | || ||| ||||||| |||||| || ||| Sbjct 118 GCCACGCCGTCGGCAT-GAA-GCGGTCGAGCTCGCCGAGCATGAGGTCGGCACGGGCGGG 175 Query 6165 GGTCATGCGTTGCTCGTATGGTTCGATCA-CGCGATCAGCTTCGATGAAACCGTGCTTTG 6223 ||||| |||| ||||| || ||||| | || | | || | ||||| |||||| | Sbjct 176 CGTCATCAGTTGGTCGTAGGGCTCGATGATCGTGTCCGGCG-CAATGAAGCCGTGCAGAG 234 Query 6224 CCGACAGGATGAGAACGGCCGGCCGCG---TCGCCGGCGCATTCGCTCGAAACGTCGAAT 6280 | |||||||| | || |||||| || | ||| | | ||||| || ||||| | Sbjct 235 CGGACAGGATCATCACCGCCGGCGCCGAGGTTGCCCGGACGTTCGCGCGGAACGTGCTGT 294 Query 6281 ACATCACGCCTTGGTAAAGGTCGATCGCCGGCGCGGCCG--TCGAGGCCTTCGTCGCCGA 6338 ||||||| ||| |||| || ||||| || | || || || || ||| ||||| || Sbjct 295 ACATCACACCTCGGTACAGATCGATTGCTCGTGCCGCATGCTCCAG--CTTGGTCGCGGA 352 Query 6339 GCACGCCATGATGACGAGG 6357 |||||||||||| |||||| Sbjct 353 GCACGCCATGATCACGAGG 371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 103290117421426