Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq979 141 6e-29 seq1 116 2e-21 seq4 104 2e-17 seq8 100 2e-16 seq7 98.7 6e-16 seq6 98.7 6e-16 >seq979 Length=3763 Score = 141 bits (156), Expect = 6e-29 Identities = 353/521 (68%), Gaps = 20/521 (4%) Strand=Plus/Plus Query 5702 AGCTTCTTCGATTCGACGCTCTGATTTAACAGACGCTTGATTGAAAAATCTGTCGTGTAT 5761 |||||||||| ||||||| ||| | ||| |||||| || || |||||||| Sbjct 833 AGCTTCTTCGGATCGACGCCCTGCGCAAGCAGCGCCTTGATCGAGTTGTCGGTCGTGTAC 892 Query 5762 GTCTCGCCTGGGTTCCACGATGGAGCGTACAGAGGTGTCTGGTGTCCCAGATCCGTTAAC 5821 | | | || ||||||| || |||| ||| | |||||||| ||||| ||||| | Sbjct 893 TTGGTGTCCGGTTTCCACGCGGGCGCGTGCAGCGCCGTCTGGTGACCCAGCTCCGTCAGG 952 Query 5822 GACCAGGCACCCTTGTAGTCGTACGTCATAACAAAGATGTGATCAAGATACCTTTGTGCG 5881 | ||||| | ||||||||||||||| | ||||||| || | || ||| ||| | Sbjct 953 CTGAACGCACCGTAGTAGTCGTACGTCATGTCGAAGATGTAGTCCATGTA-CTTCGTG-G 1010 Query 5882 CTGGC--GTAGTCGACAACGTCGATCTTGTCATGTCCCGCGCCGATAGCACTTGTCA-AT 5938 || | ||||| || |||||||||||||| | ||||||||||| || |||| | Sbjct 1011 CTTCCTTGTAGTTCACCACGTCGATCTTGTCCTTGCCCGCGCCGATCGCCGACGTCAGCT 1070 Query 5939 TGTAACCGTTTACCCCGCTTCTCGCCCA-ACTC-GTCAAGCATCACGCGAAGTTCCCGCA 5996 ||| || | || | || |||| | || | ||| |||||| || |||||| || Sbjct 1071 CGTA--GGTCTTGCCGGTGTC-CGCCGACACGCGGTCGAGCATCTGCCGCAGTTCCTTCA 1127 Query 5997 ACAAAAGAGTGTACGTATTGCG----GTCCACCTCGGCATTACCCAACACAGGATTAGCA 6052 | || || || || ||| |||| || | ||| || | | | || || Sbjct 1128 TC---AGCGT-CACATACAGCGCGCCGTCCGTCTGCGGATTGCCGATCGCGCCGTTCGCG 1183 Query 6053 CCCTTTCCACCCGGAAACTCCCAGTCAATGTCCACTCCGTCAAAGAACTTCCATGTCTCC 6112 ||||| || ||||| || |||||||| ||||| || ||||| ||||||||||| || | Sbjct 1184 CCCTTGCCGCCCGGGAATTCCCAGTCGATGTCGACACCGTCGAAGAACTTCCAGGTGCGC 1243 Query 6113 AGAAACT-CGCGGACACTTGTGACGAACACCTTACGTTTGGAGTCATCGTTCATAAAATA 6171 || |||| | ||| | | |||||||||||| || |||| |||| || | Sbjct 1244 AGCAACTGCTCGGTCGAAT-CGACGAACACCTTGCGCTTGGCCGGGTCGTGCAGCTGGAA 1302 Query 6172 AAACGGATCGCTCAACGTCCACCCCCCTATGGATGGTAGGA 6212 ||||||||| || |||||| || || || || || |||| Sbjct 1303 GAACGGATCGGACAGCGTCCAGCCGCCGATCGACGGCAGGA 1343 >seq1 Length=52991155 Score = 116 bits (128), Expect = 2e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || || | |||||||| ||| | |||| || || |||||||| || ||||| |||| | Sbjct 28610818 CCACCGCGCAACCTCAGAACTAGATGAAGCGTACTCTCTTTCTGGATATTATAATCCGCA 28610759 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || ||| | |||| |||| ||| || || ||||| || | ||||||||| || | || Sbjct 28610758 AGAGTTCTTCCATCTTCCAACTGCTTCCCTGCAAAGATCAATCGTTGCTGATCCGGTGGA 28610699 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || |||||||| ||||||| || ||| | || | ||| | ||||| Sbjct 28610698 ATGCCTTCCTTGTCTTGAATCTTCGCCTTCACGTTGTCGATTGTGTCAGAAGATTCAACT 28610639 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | |||||||||||| || || || || || |||||||| ||||| Sbjct 28610638 TCCAGGGTTATGGTTTTCCCTGTTAGGGTTTTGACAAAGATTTGCAT 28610592 >seq4 Length=56582383 Score = 104 bits (114), Expect = 2e-17 Identities = 153/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 34766 CCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTC 34825 |||||||||||| || | || ||||||||| || ||||| || | || | || | Sbjct 31287088 CCTCAAAACCAAATGCAGAGTAGATTCTTTCTGGATATTATAATCAGCCAGAGTACGGCC 31287147 Query 34826 ATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTT 34885 ||| |||| ||| || || || || ||||| | ||||||||| | || | ||||| || Sbjct 31287148 ATCTTCCAACTGCTTGCCCGCGAAAATTAGCCTCTGCTGGTCTGGAGGAATGCCCTCTTT 31287207 Query 34886 GTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTAT 34945 ||| |||||| ||| ||| | || | ||| ||||| || | ||||| Sbjct 31287208 GTCCTGAATCTTTGCTTTCACGTTGTCAATTGTATCAGAACTTTCAACCTCCAAAGTTAT 31287267 Query 34946 GGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || ||||| || |||||||||||||| ||||||||| Sbjct 31287268 TGTCTTTCCGGTAAGAGTCTTCACAAAAATCTGCATA 31287304 Score = 98.7 bits (108), Expect = 6e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || || ||||| | || || | ||||| ||| ||| || || ||||| || |||| | Sbjct 31288217 CCACCTCTCAATCGCAGCACAAGGTGAAGGGTGGATTCCTTTTGGATGTTGTAATCCGCA 31288276 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || |||| |||| ||||| || |||||||| || | |||||| || | || Sbjct 31288277 AGGGTGCGGCCATCTTCCAATTGTTTACCAGCAAATATAAGCCTTTGCTGATCGGGAGGA 31288336 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || |||||||| |||||| ||| ||| |||| | ||| ||| || Sbjct 31288337 ATACCTTCCTTGTCTTGAATCTTAGCTTTAACGTTGTCTATGGTATCAGAACTCTCCACC 31288396 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||| ||| || ||||| || || | || ||||||||||| ||||| Sbjct 31288397 TCGAGGGTGATAGTTTTGCCAGTCAATGTTTTCACAAAGATTTGCAT 31288443 Score = 98.7 bits (108), Expect = 6e-16 Identities = 164/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 |||| || ||||| || | ||||| |||| || ||| ||||| |||||||| || | Sbjct 31306452 TTCCACCTCTCAATCTAAGCACCAAATGAAGGGTAGATTCCTTCTGGATGTTATAATCAG 31306511 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 ||| ||| | |||| || |||||||| || ||||| || || | ||||| || | | Sbjct 31306512 CTAGGATTCTTCCATCCTCGAGCTGTTTACCTGCAAAGATAAGCCTCTGCTGATCAGGAG 31306571 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTC-ACCGGC---C 34928 | | ||||| ||||| ||||| ||||| || |||| ||| | ||| | Sbjct 31306572 GGATACCCTCTTTGTCTTGGATCTTGGCCTTGAC--AT--TATCAATTGTATCGGAACTC 31306627 Query 34929 TCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || | || ||||||||||| || | || ||||||||||||||||| Sbjct 31306628 TCTACCTCAAGAGTGATGGTTTTTCCTGTCAATGTTTTCACAAAGATCTGCAT 31306680 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| || || | ||| ||| |||| || ||||||||||| ||||| Sbjct 35109811 TCTTTCTGGATGTTGTAATCAGCAAGAGTTCTGCCATCTTCAAGCTGTTTTCCAGCAAAA 35109870 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | ||||||||| | || | ||||||||||| |||||| || || Sbjct 35109871 ATGAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGAATCTTAGCCTTTACATTG 35109930 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || | |||||| || | || || || ||||| || || ||||| ||| Sbjct 35109931 TCAATCGTGTCCGAGCTCTCAACCTCCAAAGTAATTGTCTTTCCTGTAAGGGTCTTTACA 35109990 Query 34971 AAGATCTGCATA 34982 || ||||||||| Sbjct 35109991 AAAATCTGCATA 35110002 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| || || | ||| ||| |||| || ||||||||||| ||||| Sbjct 35110039 TCTTTCTGGATGTTGTAATCAGCAAGAGTTCTGCCATCTTCAAGCTGTTTTCCAGCAAAA 35110098 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | ||||||||| | || | ||||||||||| |||||| || || Sbjct 35110099 ATGAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGAATCTTAGCCTTTACATTG 35110158 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || | |||||| || | || || || ||||| || || ||||| ||| Sbjct 35110159 TCAATCGTGTCCGAGCTCTCAACCTCCAAAGTAATTGTCTTTCCTGTAAGGGTCTTTACA 35110218 Query 34971 AAGATCTGCATA 34982 || ||||||||| Sbjct 35110219 AAAATCTGCATA 35110230 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| || || | ||| ||| |||| || ||||||||||| ||||| Sbjct 35110267 TCTTTCTGGATGTTGTAATCAGCAAGAGTTCTGCCATCTTCAAGCTGTTTTCCAGCAAAA 35110326 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | ||||||||| | || | ||||||||||| |||||| || || Sbjct 35110327 ATGAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGAATCTTAGCCTTTACATTG 35110386 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || | |||||| || | || || || ||||| || || ||||| ||| Sbjct 35110387 TCAATCGTGTCCGAGCTCTCAACCTCCAAAGTAATTGTCTTTCCTGTAAGGGTCTTTACA 35110446 Query 34971 AAGATCTGCATA 34982 || ||||||||| Sbjct 35110447 AAAATCTGCATA 35110458 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| || || | ||| ||| |||| || ||||||||||| ||||| Sbjct 35110495 TCTTTCTGGATGTTGTAATCAGCAAGAGTTCTGCCATCTTCAAGCTGTTTTCCAGCAAAA 35110554 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | ||||||||| | || | ||||||||||| |||||| || || Sbjct 35110555 ATGAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGAATCTTAGCCTTTACATTG 35110614 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || | |||||| || | || || || ||||| || || ||||| ||| Sbjct 35110615 TCAATCGTGTCCGAGCTCTCAACCTCCAAAGTAATTGTCTTTCCTGTAAGGGTCTTTACA 35110674 Query 34971 AAGATCTGCATA 34982 || ||||||||| Sbjct 35110675 AAAATCTGCATA 35110686 Score = 93.3 bits (102), Expect = 3e-14 Identities = 163/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||||||||| | | ||| | |||| || ||| |||||||||||||| || | Sbjct 35109319 CCTCCCCTCAAACGAAGAACAAGATGAAGGGTTGATTCCTTCTGAATGTTATAATCAGCC 35109378 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 | | | |||| || ||||| ||||| ||||| || | | |||||||||| | || Sbjct 35109379 AATGTCCTGCCATCTTCAAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGGTCTGGGGGG 35109438 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT--TCACCG-GC-CTC 34930 | ||||||||||| ||||| ||||| || |||| || | ||| || ||| Sbjct 35109439 ATACCCTCCTTGTCCTGTATCTTGGCCTTGAC--AT--TATCAATAGTGTCCGAGCTCTC 35109494 Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || | || || ||||| || ||||| ||||| ||||| ||||||||| Sbjct 35109495 TACCTCCAAAGTAATTGTTTTGCCTGTGAGTGTCTTAACAAAAATCTGCATA 35109546 Score = 89.7 bits (98), Expect = 3e-13 Identities = 161/233 (69%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 |||| || ||||| || | ||||| |||| || ||| ||||| |||||||| || | Sbjct 31260252 TTCCGCCTCTCAATCTAAGCACCAAATGAAGGGTAGATTCCTTCTGGATGTTATAATCAG 31260311 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 ||| | | | |||| || || ||||| || ||||| || || | ||||| || | | Sbjct 31260312 CTAGGGTCCTTCCATCTTCTAGTTGTTTCCCTGCAAAGATAAGCCTCTGCTGATCAGGAG 31260371 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCC 34928 | | ||||| ||||| ||||| ||||| || |||| || || || Sbjct 31260372 GGATACCCTCTTTGTCCTGTATCTTGGCCTTGAC--AT--TATCAATGGTATCCGAGGAT 31260427 Query 34929 TCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||| || | ||| ||||||||||| || | |||||| || || |||||||| Sbjct 31260428 TCAACCTCTAAGGTGATGGTTTTTCCAGTCAAAGTCTTTACGAATATCTGCAT 31260480 Score = 89.7 bits (98), Expect = 3e-13 Identities = 161/233 (69%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 |||| || || || || | |||| |||| || ||| ||||| |||||||| || | Sbjct 31287987 TTCCACCTCTTAATCTAAGCACCAGATGAAGGGTAGATTCCTTCTGGATGTTATAATCAG 31288046 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 ||| ||| | |||| || |||||||| || ||||| || || | ||||| || | | Sbjct 31288047 CTAGGGTTCTTCCATCCTCGAGCTGTTTCCCTGCAAAGATAAGCCTCTGCTGATCAGGAG 31288106 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATT----CACCGGCC 34928 | | ||||| ||||| ||||| ||||| || |||| ||| || | Sbjct 31288107 GGATACCCTCTTTGTCTTGGATCTTGGCCTTGAC--AT--TATCAATTGTATCAGATGAT 31288162 Query 34929 TCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||| || | ||| || |||||||| || | ||||||||||| |||||||| Sbjct 31288163 TCAACCTCAAGGGTGATTGTTTTTCCGGTCAATGTCTTCACAAATATCTGCAT 31288215 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| || || | ||| ||| |||| || ||||| ||||| ||||| Sbjct 35109583 TCTTTCTGGATGTTGTAATCAGCAAGAGTTCTGCCATCTTCAAGCTGCTTTCCAGCAAAA 35109642 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | ||||||||| | || | ||||||||||| |||||| || || Sbjct 35109643 ATGAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGAATCTTAGCCTTTACATTG 35109702 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || | |||||| || | || || || ||||| || || ||||| ||| Sbjct 35109703 TCAATCGTGTCCGAGCTCTCAACCTCCAAAGTAATTGTCTTTCCTGTAAGGGTCTTTACA 35109762 Query 34971 AAGATCTGCATA 34982 || ||||||||| Sbjct 35109763 AAAATCTGCATA 35109774 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| || || | ||| ||| |||| || ||||||||||| ||||| Sbjct 35110723 TCTTTCTGGATGTTGTAATCAGCAAGAGTTCTGCCATCTTCAAGCTGTTTTCCAGCAAAA 35110782 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | ||||||||| | || | ||||||||||| |||||| || || Sbjct 35110783 ATGAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGAATCTTAGCCTTTACATTG 35110842 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || | ||| || || | || || || ||||| || || ||||| ||| Sbjct 35110843 TCAATCGTGTCCGAGCTCTCTACCTCCAAAGTAATTGTCTTTCCTGTAAGGGTCTTTACA 35110902 Query 34971 AAGATCTGCATA 34982 || ||||||||| Sbjct 35110903 AAAATCTGCATA 35110914 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| |||||||| || | | ||| |||| || ||||||||||| ||||| Sbjct 35110951 TCTTTCTGGATGTTATAATCGGCCAATGTTCTGCCATCTTCAAGCTGTTTTCCAGCAAAG 35111010 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | ||||||||| | || | ||||| ||||| ||||| || || Sbjct 35111011 ATGAGCCTCTGCTGGTCTGGTGGGATACCCTCTTTGTCTTGTATCTTGGCCTTAACATTG 35111070 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||| | ||| || || | ||| || || ||||| ||||||||||||||| Sbjct 35111071 TCAATGGTATCAGAGCTCTCCACCTCAAGGGTGATTGTCTTTCCAGTGAGAGTCTTCACA 35111130 Query 34971 AAGATCTGCATA 34982 || || |||||| Sbjct 35111131 AATATTTGCATA 35111142 Score = 87.8 bits (96), Expect = 1e-12 Identities = 137/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTC--CGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCA 34847 |||||||||||| || || || | |||| | || |||| |||| ||| || || ||| Sbjct 31286884 TTCTTTCTGAATATTGTAATCTGCCAAAG--TACGACCATCCTCCAACTGCTTGCCAGCA 31286941 Query 34848 AATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACG 34907 || || || | |||||||||| | || | |||||||| || |||||| ||| ||| Sbjct 31286942 AAAATAAGCCTTTGCTGGTCTGGTGGAATACCCTCCTTATCCTGTATCTTCGCTTTCACG 31287001 Query 34908 GATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | |||| ||| | || || || | ||| || || || || || ||||||||| Sbjct 31287002 TTATCAATCGTATCAGAGCTTTCCACCTCCAAGGTAATAGTCTTCCCGGTAAGAGTCTTC 31287061 Query 34968 ACAAAGATCTGCAT 34981 ||||| || ||||| Sbjct 31287062 ACAAATATTTGCAT 31287075 Score = 86.0 bits (94), Expect = 4e-12 Identities = 153/221 (69%), Gaps = 8/221 (4%) Strand=Plus/Plus Query 34766 CCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTC 34825 |||||||||||| || | || ||| || ||||||||||| || | |||| | | | | Sbjct 31287316 CCTCAAAACCAAATGGAGGGTCGATTCCTTTTGAATGTTATAATCAGCAAGGGTCCTTCC 31287375 Query 34826 ATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTT 34885 ||| || ||||| || || ||||| || || | ||||| || | || | |||||||| Sbjct 31287376 ATCTTCAAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGATCGGGAGGGATACCCTCCTT 31287435 Query 34886 GTCGCTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGG 34941 || |||||| ||| || || |||| || || |||||| || | | Sbjct 31287436 ATCTTGAATCTTAGCTTTCAC--AT--TATCAATAGTATCTGAACTCTCAACCTCCAAAG 31287491 Query 34942 TTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | || |||||||| || || ||||| ||||| || |||||| Sbjct 31287492 TAATAGTTTTTCCGGTAAGGGTCTTTACAAAAATTTGCATA 31287532 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| | | | ||| |||| || ||||||||||| ||||| Sbjct 36294289 TCCTTCTGGATGTTGTAGTCAGCCAAGGTTCTGCCATCTTCAAGCTGTTTTCCAGCAAAG 36294230 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | ||||||||| | || | || || ||||| ||||| || || Sbjct 36294229 ATGAGCCTCTGCTGGTCTGGTGGAATACCTTCTTTGTCCTGTATCTTGGCCTTAACATTG 36294170 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||| | ||| || || | ||| || || ||||| ||||||||||||||| Sbjct 36294169 TCAATGGTATCAGAGCTCTCCACCTCAAGGGTGATTGTCTTTCCAGTGAGAGTCTTCACA 36294110 Query 34971 AAGATCTGCATA 34982 || || |||||| Sbjct 36294109 AATATTTGCATA 36294098 Score = 86.0 bits (94), Expect = 4e-12 Identities = 152/218 (70%), Gaps = 8/218 (4%) Strand=Plus/Minus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 |||||| | ||||| || || ||||||||||| ||||| | |||| | | | |||| Sbjct 36295451 CAAAACAAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGCAAGGGTCCTTCCATC 36295392 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 |||| || || || ||||| || | | ||||| ||| | || | ||||||||||| Sbjct 36295391 CTCCAATTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGGGGGATTCCCTCCTTGTC 36295332 Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGAT--TCACCGGCC--TCAACATCGACGGTTA 34944 || || ||||| || ||||||| | | | | || || || | ||| | Sbjct 36295331 CTGGATTTTTGCCTTGAC--AT--TATCGATAGTGTCTGAACTTTCCACCTCTAAGGTGA 36295276 Query 34945 TGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 |||| ||||| || | ||||||||||||||||||||| Sbjct 36295275 TGGTCTTTCCGGTCAATGTCTTCACAAAGATCTGCATA 36295238 >seq8 Length=45569985 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||||||||| | | || | ||||| || |||||||||||||| || || | | Sbjct 34999912 CCTCCCCTCAAACGAAGGACAAGGTGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGCA 34999971 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || |||| || ||||| ||||| ||||| || | ||||||||||||| | || Sbjct 34999972 AGAGTCCGGCCATCTTCGAGCTGCTTTCCAGCAAAAATCAATCGTTGCTGGTCTGGGGGA 35000031 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | ||||||||||| ||| || || || | || | || | ||| || Sbjct 35000032 ATGCCCTCCTTGTCCTGAATTTTAGCCTTCACATTGTCAATAGTGTCTGAGCTCTCTACC 35000091 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || | || || ||||| || || ||||||||||| || ||||||||| Sbjct 35000092 TCCAAAGTAATTGTTTTGCCAGTAAGAGTCTTCACGAAAATCTGCATA 35000139 Score = 98.7 bits (108), Expect = 6e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 ||||||||||||||||| || | | | ||| |||| || ||||||||||| ||||| Sbjct 35000404 TCTTTCTGAATGTTATAATCAGCCAAGGTTCTGCCATCTTCAAGCTGTTTTCCAGCAAAG 35000463 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | ||||| ||| | || | ||||| ||||| ||||| ||||| Sbjct 35000464 ATGAGCCTCTGCTGATCTGGTGGGATACCCTCTTTGTCTTGTATCTTGGCCTTGACATTG 35000523 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||| | ||| || || | ||| || || ||||| ||||||||||||||| Sbjct 35000524 TCAATGGTGTCAGAGCTCTCCACCTCAAGGGTAATTGTCTTTCCTGTGAGAGTCTTCACA 35000583 Query 34971 AAGATCTGCATA 34982 || || |||||| Sbjct 35000584 AATATTTGCATA 35000595 Score = 95.1 bits (104), Expect = 8e-15 Identities = 149/211 (71%), Gaps = 8/211 (4%) Strand=Plus/Minus Query 34778 GTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTG 34837 ||||| ||| ||| ||||| ||||| ||||| | || | ||| | || |||| ||| Sbjct 36460062 GTGAAGAGTGGATTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGTCCGTCTTCCAACTG 36460003 Query 34838 TTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTT 34897 |||||||| || || || ||||||||||| | || | || ||||| || ||||| Sbjct 36460002 CTTTCCGGCGAAGATGAGACGTTGCTGGTCAGGTGGAATTCCTTCCTTATCCTGGATCTT 36459943 Query 34898 CTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTC 34953 |||||| || | ||||| || | |||||| |||| |||||| || || | Sbjct 36459942 GGCTTTGAC--AT--TGTCGATTGTGTCGGAAGACTCAACCTCGAGGGTTATCGTCTTCC 36459887 Query 34954 CCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 | || || || ||||| ||||||||||| || Sbjct 36459886 CTGTTAGGGTTTTCACGAAGATCTGCATCTT 36459856 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| || || | | | ||| |||| || ||||||||||| ||||| Sbjct 6168131 TCCTTCTGGATGTTGTAATCAGCCAAGGTTCTGCCATCTTCAAGCTGTTTTCCAGCAAAG 6168072 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | ||||||||| | || | ||||| ||||| ||||| || || Sbjct 6168071 ATGAGCCTCTGCTGGTCTGGTGGGATACCCTCTTTGTCTTGTATCTTGGCCTTAACATTG 6168012 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||| | ||| || || | ||| || || ||||| ||||||||||||||| Sbjct 6168011 TCAATGGTATCAGAGCTCTCCACCTCAAGGGTAATCGTCTTTCCAGTGAGAGTCTTCACA 6167952 Query 34971 AAGATCTGCATA 34982 || || |||||| Sbjct 6167951 AATATTTGCATA 6167940 >seq7 Length=49172423 Score = 98.7 bits (108), Expect = 6e-16 Identities = 141/195 (72%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| |||||||| || | | ||| |||| || ||||||||||| ||||| Sbjct 47990040 TCTTTCTGGATGTTATAATCGGCCAATGTTCTGCCATCTTCAAGCTGTTTTCCAGCAAAG 47989981 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||||| | || | ||| |||||||| |||||| ||||| || Sbjct 47989980 ATGAGCCTCTGCTGGTCAGGTGGGATCCCTTCCTTGTCTTGAATCTTGGCCTTGAC--AT 47989923 Query 34911 GCTATCGATT-CACCGG---CCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | || ||| | ||| ||| || || | || || |||||||| ||||||||||| Sbjct 47989922 --TGTCAATTGTATCGGAGCTCTCCACCTCAAGAGTGATTGTTTTTCCTGTGAGAGTCTT 47989865 Query 34967 CACAAAGATCTGCAT 34981 ||||||||| ||||| Sbjct 47989864 CACAAAGATTTGCAT 47989850 >seq6 Length=35275713 Score = 98.7 bits (108), Expect = 6e-16 Identities = 140/195 (72%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 ||||| || ||||| || || | ||| ||| |||| || ||||| ||||| ||||| Sbjct 24039502 TCTTTTTGGATGTTGTAATCGGCAAGAGTTCTGCCATCTTCAAGCTGCTTTCCAGCAAAA 24039443 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | ||||||||| | || | ||||||||||| |||||| |||||| || Sbjct 24039442 ATGAGCCTCTGCTGGTCTGGGGGGATACCCTCCTTGTCCTGAATCTTGGCTTTGAC--AT 24039385 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 |||| || ||| | ||| || || | ||| || || ||||| ||||||||||| Sbjct 24039384 --TATCAATAGTATCAGAGCTCTCCACCTCAAGGGTGATTGTCTTTCCAGTGAGAGTCTT 24039327 Query 34967 CACAAAGATCTGCAT 34981 || ||||| ||||| Sbjct 24039326 GACGAAGATTTGCAT 24039312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324624947195736