Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq3 269 3e-67 seq7 179 4e-40 seq276 174 2e-38 seq8 154 2e-32 seq1 127 2e-24 >seq3 Length=55515152 Score = 269 bits (298), Expect = 3e-67 Identities = 629/945 (67%), Gaps = 4/945 (0%) Strand=Plus/Plus Query 47877 AGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATT 47936 ||||| || ||||| || ||||| ||||| ||| ||||| | ||||| || ||||| Sbjct 2060466 AGTGCAATTGATGCAAGGTTACACACAGCAGTCTCTGTTGGACTTGTATACTGGATTATC 2060525 Query 47937 TCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTA 47996 |||| || ||||| | || || || |||| ||| || || || | | || Sbjct 2060526 TCAGTGCACAGATTTGATGACTTAATTGTGCCCAGATTCTGCTGGTTGCTTTTCCTATTG 2060585 Query 47997 CATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGA-TTCAATGATAGA 48055 || | ||||| ||||||| |||| |||||||||||||||| || ||||| || | Sbjct 2060586 CAAGTATCCTTAAAAAGCATGTAAGGATTTCCAGTTTCTATCTGTGACTTCAAA-ATTGC 2060644 Query 48056 TTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGT 48115 ||| | ||||| || | | || | | ||||| | | ||| || | ||| Sbjct 2060645 AAACCACAGAGTCCGTGCTTGAACAATCTTTTTTGCTTTTCCTGCTTTTTCATACTGAGT 2060704 Query 48116 ATATAACTTCTCAAATTCATCCCCATACACATTAT-CTAACCCAGGACATTCATTAGGAC 48174 || | ||| |||||||| || || | ||| | | | || ||||| |||||| || | Sbjct 2060705 GTACAGCTTATCAAATTCTTCACCCCA-ACAATCTGCCAAACCAGGTGCTTCATTGGGGC 2060763 Query 48175 ACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAA 48234 | | || ||||| ||| |||| | |||| |||||| | ||| || | ||||| Sbjct 2060764 AGAACAGGGACCATTCCCCATCGCTCAGAGCTCTTTCCATAAAGAGATCAGGCACCCAAA 2060823 Query 48235 GAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAA 48294 | || ||||||||| | || | | | ||||| || ||| ||| |||| | ||| | Sbjct 2060824 GGGCGTAAAATAAATCTCGAGCACGTTGCTCTTCCTTTCCATGATTTATTTTCAATTCCA 2060883 Query 48295 GAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTT 48354 | ||||| | |||||||||||||||||| || || || | || | ||||| | | Sbjct 2060884 GGAAGTCAAATATATCAGCATGCCATGGCTCCAAGTACACAGCAAAAGCACCTTTCCTCT 2060943 Query 48355 TATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAA 48414 | || || ||||| | ||| | ||||||| || | || | | ||| || |||| Sbjct 2060944 TGCCTCCCCCCTGATCAACATAACGTGCAGTATCATTGAACACACGAAGCATCGGAACAA 2061003 Query 48415 TACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAA 48474 ||||||| || | ||||| |||||| ||| ||||| || || | |||||| || Sbjct 2061004 TACCATTAGACGTTCCATTTGTTCCCCGAATGTAACTACCTTGGGCACGTATATTGTGAA 2061063 Query 48475 TTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCAT 48534 |||| ||| || || || || |||| || | ||||||| || | ||||||| Sbjct 2061064 CAGAAACACCAATCCCTCCAGCAGATTTACTAATGACAGCACACTCCTTCAATGTATCAT 2061123 Query 48535 AAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGAT 48594 |||| || || |||||||| ||| |||| | | || |||||| || || || Sbjct 2061124 AAATCCCCTCAATACTATCCTCTTTCATGCAAACCAAGAAGCAACTACTCAACTGAGGCC 2061183 Query 48595 GACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACA 48654 | ||||| | || || | ||| ||||| |||||| | |||||| ||| || | | Sbjct 2061184 TAGGTGTTCCGGCGTTGAAAAGTGTAGGAGAAGCATGAGTGAACCATCTCTGAGACATGA 2061243 Query 48655 ATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCA 48714 | | ||| |||| | | |||| || | ||| || || || || | ||| || | || Sbjct 2061244 AATGATAAGTTTTGACAGCAGATTCAACATCATCTTTGTGAATTCCAACAGAAACCCTCA 2061303 Query 48715 TTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTT 48774 ||| ||||| |||||||||||| |||| | | |||||| ||||| || ||| Sbjct 2061304 TTATCATATGTTGAGGTCTTTCCACAACCACTCCTTCAACTTTCAACAGATAAGACCTTT 2061363 Query 48775 CCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCAT 48819 | | ||||| || ||||| || | ||| ||| || |||||| Sbjct 2061364 CTAGGGTTTTGAATCCAAAGTAATCGTAGTCAAAATCCCTATCAT 2061408 >seq7 Length=49172423 Score = 179 bits (198), Expect = 4e-40 Identities = 567/874 (65%), Gaps = 11/874 (1%) Strand=Plus/Plus Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 ||| ||||| || |||| | || |||||||||||||| || || | | || || | Sbjct 10196786 TTTCTGATACTCCCCAACACGCTTCTCAAAGAAATTAGTATTCCCTTGAAGAGAAATCAA 10196845 Query 18729 TTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAG 18788 ||||| ||||||| ||||| | |||||||| | |||| | || | || | Sbjct 10196846 ATCCATCCAATCAAACGGATTCTGAACATTATAAACCTTTTCACAACCAAGATCACCCAA 10196905 Query 18789 TAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAA 18848 || |||||| || ||||| | |||||| || |||||| ||| |||||| || | || Sbjct 10196906 TAATCTATCAGCAACAAACTCAATATAAGTACTCATCAATCCACCATTCATCCCAACCAA 10196965 Query 18849 TTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAAT 18908 ||| || |||| | |||||| |||| || | || || | ||| ||| Sbjct 10196966 CGCGCAAGGAAGAGCATAGCAGACAAATTCACGTTCAATTTCAACAGCATTGCATACAAT 10197025 Query 18909 AGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAAA 18968 || | ||| | | | | ||| ||| || | | |||||| ||||| Sbjct 10197026 TTCCTTCACACGCTCTGAAGTTAGTTTCTTTAGTAGAAGTGAGTATAACAAACAAGCAAA 10197085 Query 18969 ATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCAT 19028 |||||| || || || ||||| | || | || || || |||||||| || ||||| Sbjct 10197086 ATCACAGTGCAGACCTTCGTCACGTGAAATAAGCTCGTTTGAGAATGTTAACCCTGGCAT 10197145 Query 19029 CAGTCCTCttttttttAACCAGAATATAGAAGCAAATG-ATCCAGAAAAGAATATACCTT 19087 | || | ||||| |||||||| || | ||||| | ||| || ||||| || |||| Sbjct 10197146 TAAACCGCGCTTTTTCAACCAGAAAATCG-CGCAAAAGCTTCCGGAGAAGAAAATTCCTT 10197204 Query 19088 CTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATT 19147 |||| ||||| ||||| | |||||| || | || ||| | || |||||||| Sbjct 10197205 CTACACAAGCAAATGCAACGATTCTTTCAGCAAA---AGAATCGCTTGAATCAATCCATT 10197261 Query 19148 TCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATA--- 19204 ||| ||||||||||||||| || | |||||| |||||||| || | || ||||| Sbjct 10197262 TCATTGCCCAATCAGCCTTTTTCGCGATACATGGAATTGTCTCAATTGCATGAAATAAGC 10197321 Query 19205 GATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTG 19264 ||| | | ||| | | ||| | | ||||| || || | | |||||| || | Sbjct 10197322 GATTCTT---TTCAGCAGAATCGCTTATATATGTTTCAATGAGAAGGGAGTACATCTCAG 10197378 Query 19265 AATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTA 19324 |||| || ||||| || || || || || || || || | |||||| | || || | Sbjct 10197379 AATGGATGTTTTCAATTGCAATTTGGAAACCATAGAAGGCACGTGCTTCGGAGATTTGGA 10197438 Query 19325 CTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAA 19384 |||| | |||||| || | | ||||||| || ||||| || || || || | Sbjct 10197439 CTTCTTTCATGAATCTTCCGGCAAGATTTTCAAGGACAATTCCGTCTGAGGCGGCGAAGA 10197498 Query 19385 ATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAA 19444 | || | || || || || || ||| | || | | ||||| | || | Sbjct 10197499 AGGCAAGAACGTGAGAGATGAAGTGGCGTTCGCCGTCTGTGAGGTTGTTCCAGTGCTTGA 10197558 Query 19445 TATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACA 19504 ||| || | ||| |||||||| | ||||| || || || || |||||||| |||| Sbjct 10197559 GATCGGAGGAAAGATCAACTTCTTCGGCGGTCCAGAATGAGGCTTCGGCTTTTTTGTACA 10197618 Query 19505 TGTTCCATATATCACGATATTGTATAGGAAATAT 19538 | | ||| || | | ||||| || || || || Sbjct 10197619 TTTCCCAGATTTTTGGGTATTGGATTGGGAACAT 10197652 >seq276 Length=24472 Score = 174 bits (192), Expect = 2e-38 Identities = 568/875 (65%), Gaps = 13/875 (1%) Strand=Plus/Minus Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 ||| ||||| || |||| | || ||||||||||| || || || | | || || | Sbjct 23302 TTTCTGATACTCCCCAACACGCTTCTCAAAGAAATTCGTCTTCCCTTGAAGGGAAATCAA 23243 Query 18729 TTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAG 18788 ||||| ||||||| ||||| | |||||||| | |||| | || | || | Sbjct 23242 CTCCATCCAATCAAACGGATTCTGAACATTATAAACCTTTTCACAACCAAGCTCACCCAA 23183 Query 18789 TAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAA 18848 || |||||| || ||||| | |||||| || |||||| ||| |||||| || | || Sbjct 23182 TAATCTATCAGCAACAAACTCAATATAAGTACTCATCAATCCACCATTCATCCCAACCAA 23123 Query 18849 TTTAACAGGTAGTGCATCTGTA-AGAAATTCTTGTTCTATATTTACTGCCTCTGATATAA 18907 ||| ||||| | || | | |||||| |||| || | || || | ||| || Sbjct 23122 CGCGCAAGGAAGTGCTT-TGCAGACAAATTCACGTTCAATTTCAACAGCATTGCATACAA 23064 Query 18908 TAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAA 18967 | || | ||| | | | | | | ||| || | | |||||| |||| Sbjct 23063 TTTCCTTCACACGCTCTGAAGTTAGTTTCTTTTGTAGAAGTGAGTATAACAAACAAGCAA 23004 Query 18968 AATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCA 19027 ||||||| || || || ||||| | || | || || || |||||||| || |||| Sbjct 23003 AATCACAGTGCAGACCTTCGTCACGTGAAATAAGCTCGTTTGAGAATGTTAACCCTGGCA 22944 Query 19028 TCAGTCCTCttttttttAACCAGAATATAGAAGCAAATG-ATCCAGAAAAGAATATACCT 19086 | | || | ||||| |||||||| || | ||||| | ||| || ||||| || ||| Sbjct 22943 TTAAACCGCGCTTTTTCAACCAGAAAATCG-CGCAAAAGCTTCCGGAGAAGAAAATTCCT 22885 Query 19087 TCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCAT 19146 ||||| ||||| ||||| | |||||| || | || ||| | || ||||||| Sbjct 22884 TCTACACAAGCAAATGCAACGATTCTTTCAGCAAA---AGAATCGCTTGAATCAATCCAT 22828 Query 19147 TTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATA-- 19204 |||| ||||||||||||||| || | |||||| |||||||| || | || ||||| Sbjct 22827 TTCATTGCCCAATCAGCCTTTTTCGCGATACATGGAATTGTCTCAATTGCATGAAATAAG 22768 Query 19205 -GATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCT 19263 ||| | | ||| | | ||| | | ||||| || || | | |||||| || Sbjct 22767 CGATTCTT---TTCAGCAGAATCGCTTATATATGTTTCAATGAGAAGGGAGTACATCTCA 22711 Query 19264 GAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGT 19323 ||||| || ||||| || || || || || || || || | |||||| | || || Sbjct 22710 GAATGGATGTTTTCAATTGCAATTTGGAAACCATAGAAGGCACGTGCTTCGGAGATTTGG 22651 Query 19324 ACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAA 19383 ||||| | |||||| || | | ||||||| || ||||| || || || || Sbjct 22650 ACTTCTTTCATGAATCTTCCGGCAAGATTTTCAAGGACAATTCCGTCTGAGGCGGCGAAG 22591 Query 19384 AATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTA 19443 || || | || || || || || ||| | || | | ||||| | || Sbjct 22590 AAGGCAAGAACGTGAGAGATGAAGTGGCGTTCGCCGTCTGTGAGGTTGTTCCAGTGCTTG 22531 Query 19444 ATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATAC 19503 | ||| || | ||| |||||||| | ||||| || || || || |||||||| ||| Sbjct 22530 AGATCGGAGGAAAGATCAACTTCTTCGGCGGTCCAGAATGAGGCTTCGGCTTTTTTGTAC 22471 Query 19504 ATGTTCCATATATCACGATATTGTATAGGAAATAT 19538 || | ||| || | | ||||| || || || || Sbjct 22470 ATTTCCCAGATTTTTGGGTATTGGATTGGGAACAT 22436 >seq8 Length=45569985 Score = 154 bits (170), Expect = 2e-32 Identities = 599/934 (64%), Gaps = 17/934 (2%) Strand=Plus/Plus Query 18613 TAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATTCATTACTCCCATTTTT 18672 |||||||| ||||||||| ||| ||| || || | |||||| || ||| Sbjct 25025222 TAAAAATCCTCATCCAAAGTAAAGCAATAATCAGCACCACCATTCATAACAGAAGCTTTC 25025281 Query 18673 TGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCC 18732 ||||| || |||| | || ||||||||||| ||||| |||| | || || | ||| Sbjct 25025282 TGATACTCCCCAACGCGCTTCTCAAAGAAATTGGTTTTCCCCTGAAGCGAAATCAAATCC 25025341 Query 18733 ATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGTAGT 18792 || ||||||||||||| | |||||||| | ||| | | || | || | || Sbjct 25025342 ATCCAATCAAATGGATTCTGAACATTATAAACTTTCTCACAACCAAGCTCACCCAATAAC 25025401 Query 18793 CTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAATTTA 18852 ||||| || ||||| | |||||| |||||| |||| ||||| || | || Sbjct 25025402 CTATCAGCAACAAACTCAATATACTGACTCATCAATTCACCGTTCATCCCAACCAACGCG 25025461 Query 18853 ACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATAGAT 18912 ||| || || || | ||| || ||| || | || || || | ||| Sbjct 25025462 CAAGGAAGCGCGTCGCATACAAACTCCCTTTCAATCTCAACCGCATCACGAACAATCTTC 25025521 Query 18913 ACAACTCTATCT----TCA--TTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCA 18966 || || | ||| ||| || || | |||| || || ||| |||||| ||| Sbjct 25025522 ACCACGCGCTCTGTACTCAGTTTCTGACGCAATAGC-GA-GTATAA----CAAACAAGCA 25025575 Query 18967 AAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGC 19026 |||||||| |||| || ||||| | || | || || || || ||||| || ||| Sbjct 25025576 AAATCACAGTGTAAGCCTTCGTCGCGTGAAATAAGCTCGTTTGAGAAAGTTAATCCCGGC 25025635 Query 19027 ATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCT 19086 || | || | |||||| |||||||| || | | || ||| || ||||| || ||| Sbjct 25025636 ATTAAACCGCGTTTTTTCAACCAGAAAATCGCACAGAAGCTTCCGGAGAAGAAAATTCCT 25025695 Query 19087 TCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCAT 19146 || || || |||||||| | ||||||| || | || ||| | || |||||| Sbjct 25025696 TCAACACAAGCGAAAGCAACGATTCTTTCTGCAAA---AGAATCGCTTGAATCGATCCAT 25025752 Query 19147 TTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGA 19206 |||| ||||||||||| ||||| | ||| || ||||| || || | | ||||| | Sbjct 25025753 TTCAAAGCCCAATCAGCTTTCTTAGCAATACACGGAATTGTGTCAATTGCGTGAAATA-A 25025811 Query 19207 TACATAC-GCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGA 19265 | || | ||| | | ||| | | ||| | || | | | | ||||| ||||| Sbjct 25025812 TCGATTCTTTTCAGCAGAATCGCTTATATACGTTTCGAGGAGAAGAGAATACATCTCTGA 25025871 Query 19266 ATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTAC 19325 || || ||||| ||||| || ||||| ||||| ||| | ||||| | || || || Sbjct 25025872 GTGGATGTTTTCAATAGCGATTTGAAACCCGTAGAAAGCACGCGCTTCAGAGATTTGAAC 25025931 Query 19326 TTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAA 19385 ||| | |||||| || | | |||||| || || || || || || || || Sbjct 25025932 TTCTTTCATGAATCTTCCGGCGAGATTTTCGAGGACGATACCGTCGGAGGCGGCGAAGAA 25025991 Query 19386 TGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAAT 19445 || | | || || || || ||| | ||| | | ||||| | | || Sbjct 25025992 GGCGAGGATGTGAGAGATGAAGTGGCGTTCGCCGTCGGTGAGGTTGTTCCAGTGTTGAAG 25026051 Query 19446 ATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACAT 19505 ||| || | ||| |||||||| | ||||| ||||| || || |||||||| ||||| Sbjct 25026052 ATCGGAGGAAAGATCGACTTCTTCGGCGGTCCAGAAAGAGGCTTCGGCTTTTTTGTACAT 25026111 Query 19506 GTTCCATATATCACGATATTGTATAGGAAATATA 19539 | ||| || | | ||||| || || || ||| Sbjct 25026112 TTCCCAGATTTTTGGGTATTGGATTGGGAACATA 25026145 Score = 98.7 bits (108), Expect = 1e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 ||||| ||||| | ||| | |||||||| || | || | | ||| || |||||||| Sbjct 38673402 CCTCCCTGATCAACATAACGGGCAGTATCATTGAACACACGCAGCATCGGAACAATACCG 38673461 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || || | ||||| |||||| ||| ||||| ||| || | ||| || || ||| Sbjct 38673462 TTAGACGTTCCATTTGTTCCCCGAATGTAACTACCATGGGCACGTATGTTGTGAACAGAA 38673521 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| || || ||||| |||| || | ||||||| || | ||||||||||| Sbjct 38673522 ACACCAATTCCTCCTGCAGATTTACTAATAACAGCACACTCCTTCAATGTATCATAAATC 38673581 Query 48540 CCTTCTATACTATCATCTATCATA 48563 || || |||||||| ||| ||||| Sbjct 38673582 CCCTCAATACTATCCTCTTTCATA 38673605 >seq1 Length=52991155 Score = 127 bits (140), Expect = 2e-24 Identities = 553/873 (63%), Gaps = 9/873 (1%) Strand=Plus/Minus Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 ||| ||||| || |||| | || ||||| ||||| |||||||||| | || || | Sbjct 19457813 TTTCTGATACTCCCCAACGCGCTTCTCAAAAAAATTGGTTTTTCCCTGAAGCGAAATCAA 19457754 Query 18729 TTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAG 18788 |||||| ||||||| ||||| | ||||| || | |||| | || | || | Sbjct 19457753 TTCCATCCAATCAAACGGATTCTGAACATTGTAAACCTTTTCACAACCAAGCTCACCCAA 19457694 Query 18789 TAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAA 18848 || ||||| || ||||| | |||||| || |||||| | | | |||||| || | || Sbjct 19457693 TAACCTATCAGCAACAAACTCAATATACGTACTCATCAAACCCCCATTCATCCCAACCAA 19457634 Query 18849 TTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAAT 18908 ||| || || | | ||| || ||| || | || || || | | ||| Sbjct 19457633 CGCGCAAGGAAGCGCGTGGCACACAAACTCCCTTTCAATTTCAACAGCATCACAAACAAT 19457574 Query 18909 AGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAAA 18968 | || | ||| | | | | | | ||| || | | |||||| || || Sbjct 19457573 TTCTTTCACGCGCTCTGAACTTAGCTTCTTTCGTAGAAGTGAGTATAACAAACAAGCGAA 19457514 Query 18969 ATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCAT 19028 |||||| || | ||| ||||| | || | || || || || ||||| || ||||| Sbjct 19457513 ATCACAGTGCAATCCTTCGTCGCGTGAAATAAGCTCGTTTGAGAAGGTTAATCCCGGCAT 19457454 Query 19029 CAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTC 19088 | || | ||||| |||||||| || | | || ||| || || || || ||||| Sbjct 19457453 TAAACCGCGCTTTTTCAACCAGAAAATCGCACAGAAGCTTCCGGAGAAAAAGATTCCTTC 19457394 Query 19089 TACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTT 19148 || ||||| ||||| | ||||||| || || | ||| | || |||||||| Sbjct 19457393 AACACAAGCAAACGCAACGATTCTTTCTGCAAAA---GAATCGCTTGAATCGATCCATTT 19457337 Query 19149 CAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATA---G 19205 || ||||||||||| ||||| | |||||| ||||| || || | || ||||| | Sbjct 19457336 CATCGCCCAATCAGCTTTCTTCGCGATACATGGAATTGTTTCAATTGCATGAAATAAGCG 19457277 Query 19206 ATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGA 19265 || | | ||| | | ||| | | ||| | || | | | | ||||| || || Sbjct 19457276 ATTCTT---TTCAGCGGAATCGCTTATATACGTTTCGAGGAGAAGAGAATACATCTCAGA 19457220 Query 19266 ATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTAC 19325 || || ||||| || || ||||| || ||||| || | |||||| | | || | Sbjct 19457219 GTGGATGTTTTCAATTGCAATCTGGAAACCGTAGAAGGCACGTGCTTCAGAGACTTGGAT 19457160 Query 19326 TTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAA 19385 ||| | |||||| || | | ||||||| || || || || || || || || Sbjct 19457159 TTCTTTCATAAATCTACCGGCGAGATTTTCAAGGACGATGCCGTCGGAGGCAGCGAAGAA 19457100 Query 19386 TGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAAT 19445 || | ||||| || || || ||| | ||| | | | ||| | || | Sbjct 19457099 GGCGAGGACATGAGAGATGAAGTGGCGTTCGCCGTCGGTGAGGTTTTGCCAGTGCTTGAG 19457040 Query 19446 ATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACAT 19505 ||| || | ||| ||||||||| | ||||| || || || || |||||||| ||||| Sbjct 19457039 ATCGGAGGAAAGATCGACTTCTTCAGCGGTCCAGAATGAGGCTTCGGCTTTTTTGTACAT 19456980 Query 19506 GTTCCATATATCACGATATTGTATAGGAAATAT 19538 | ||| || | | ||||| || || || || Sbjct 19456979 TTCCCAGATTTTTGGGTATTGGATTGGGAACAT 19456947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562093433350680