Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq276 156 5e-33 seq7 156 5e-33 seq8 123 3e-23 >seq276 Length=24472 Score = 156 bits (172), Expect = 5e-33 Identities = 358/532 (67%), Gaps = 13/532 (2%) Strand=Plus/Minus Query 37170 AATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAG 37229 || ||||| ||||||||||| || | |||||| || | || | || || || || Sbjct 23016 AACAAACAAGCAAAATCACAGTGCAGACCTTCGTCACGTGAAATAAGCTCGTTTGAGAAT 22957 Query 37230 GTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAG-ATCCAGA 37288 ||||| |||||||||||||| | ||||| | ||| || || || ||||||| ||| || Sbjct 22956 GTTAACCCTGGCATTAAACCGCGCTTTTTCAACCAGAAAATCGC-GCAAAAGCTTCCGGA 22898 Query 37289 AAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATA 37348 |||||||| ||||| || |||||||| || | | | | | |||| || | Sbjct 22897 GAAGAAAATTCCTTCTACACAAGCAAATGCAACGATTCTTTCAGCAAAAGAATCGCTTGA 22838 Query 37349 ATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAAT 37408 ||| ||||||||| ||| |||||| |||||| | |||| |||||| ||||| Sbjct 22837 ATC---AATCCATTTCATTGCCCAATCAGCCTTTTTCGCGATACATGGAATTGTCTCAAT 22781 Query 37409 TGCTT---TTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAA 37465 ||| | |||| || || ||||| || ||| ||||||| || ||||| || | Sbjct 22780 TGCATGAAATAAGCGA---TTCTTTTCAGCAGAATCGCTTATATATGTTTCAATGAGAAG 22724 Query 37466 ACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATA-AAAACACCTAG 37524 ||||| ||||| || || |||||||| || || || |||||||| || ||| | | Sbjct 22723 GGAGTACATCTCAGAATGGATGTTTTCAATTGCAATTTGGAAACCATAGAAGGCACGT-G 22665 Query 37525 CTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCAT 37584 |||| || | ||| || || || | || || || | |||||| || || || | Sbjct 22664 CTTCGGAGATTTGGACTTCTTTCATGAATCTTCCGGCAAGATTTTCAAGGACAATTCCGT 22605 Query 37585 CACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAATT 37644 | || || ||||| |||||||| | || || || | ||| | | || | | Sbjct 22604 CTGAGGCGGCGAAGAAGGCAAGAACGTGAGAGATGAAGTGGCGTTCGCCGTCTGTGAGGT 22545 Query 37645 TTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAA 37696 | ||||| | || | ||| || | ||||||||| || ||||||| || Sbjct 22544 TGTTCCAGTGCTTGAGATCGGAGGAAAGATCAACTTCTTCGGCGGTCCAGAA 22493 >seq7 Length=49172423 Score = 156 bits (172), Expect = 5e-33 Identities = 358/532 (67%), Gaps = 13/532 (2%) Strand=Plus/Plus Query 37170 AATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAG 37229 || ||||| ||||||||||| || | |||||| || | || | || || || || Sbjct 10197072 AACAAACAAGCAAAATCACAGTGCAGACCTTCGTCACGTGAAATAAGCTCGTTTGAGAAT 10197131 Query 37230 GTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAG-ATCCAGA 37288 ||||| |||||||||||||| | ||||| | ||| || || || ||||||| ||| || Sbjct 10197132 GTTAACCCTGGCATTAAACCGCGCTTTTTCAACCAGAAAATCGC-GCAAAAGCTTCCGGA 10197190 Query 37289 AAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATA 37348 |||||||| ||||| || |||||||| || | | | | | |||| || | Sbjct 10197191 GAAGAAAATTCCTTCTACACAAGCAAATGCAACGATTCTTTCAGCAAAAGAATCGCTTGA 10197250 Query 37349 ATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAAT 37408 ||| ||||||||| ||| |||||| |||||| | |||| |||||| ||||| Sbjct 10197251 ATC---AATCCATTTCATTGCCCAATCAGCCTTTTTCGCGATACATGGAATTGTCTCAAT 10197307 Query 37409 TGCTT---TTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAA 37465 ||| | |||| || || ||||| || ||| ||||||| || ||||| || | Sbjct 10197308 TGCATGAAATAAGCGA---TTCTTTTCAGCAGAATCGCTTATATATGTTTCAATGAGAAG 10197364 Query 37466 ACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATA-AAAACACCTAG 37524 ||||| ||||| || || |||||||| || || || |||||||| || ||| | | Sbjct 10197365 GGAGTACATCTCAGAATGGATGTTTTCAATTGCAATTTGGAAACCATAGAAGGCACGT-G 10197423 Query 37525 CTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCAT 37584 |||| || | ||| || || || | || || || | |||||| || || || | Sbjct 10197424 CTTCGGAGATTTGGACTTCTTTCATGAATCTTCCGGCAAGATTTTCAAGGACAATTCCGT 10197483 Query 37585 CACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAATT 37644 | || || ||||| |||||||| | || || || | ||| | | || | | Sbjct 10197484 CTGAGGCGGCGAAGAAGGCAAGAACGTGAGAGATGAAGTGGCGTTCGCCGTCTGTGAGGT 10197543 Query 37645 TTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAA 37696 | ||||| | || | ||| || | ||||||||| || ||||||| || Sbjct 10197544 TGTTCCAGTGCTTGAGATCGGAGGAAAGATCAACTTCTTCGGCGGTCCAGAA 10197595 >seq8 Length=45569985 Score = 123 bits (136), Expect = 3e-23 Identities = 256/378 (68%), Gaps = 5/378 (1%) Strand=Plus/Plus Query 37170 AATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAG 37229 || ||||| ||||||||||| ||||| ||||| || | || | || || || || Sbjct 25025564 AACAAACAAGCAAAATCACAGTGTAAGCCTTCGTCGCGTGAAATAAGCTCGTTTGAGAAA 25025623 Query 37230 GTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAG-ATCCAGA 37288 |||||||| ||||||||||| | |||||| | ||| || || || || ||| ||| || Sbjct 25025624 GTTAATCCCGGCATTAAACCGCGTTTTTTCAACCAGAAAATCGC-ACAGAAGCTTCCGGA 25025682 Query 37289 AAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATA 37348 |||||||| |||||||| || || || || | | | | |||| || | Sbjct 25025683 GAAGAAAATTCCTTCAACACAAGCGAAAGCAACGATTCTTTCTGCAAAAGAATCGCTTGA 25025742 Query 37349 ATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAAT 37408 ||| |||||||| | |||||| || || || ||| |||||| ||||| Sbjct 25025743 ATC---GATCCATTTCAAAGCCCAATCAGCTTTCTTAGCAATACACGGAATTGTGTCAAT 25025799 Query 37409 TGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACT 37468 ||| | || | || ||||| || ||| ||||||| || || | || | | Sbjct 25025800 TGCGTGAAATAATCGATTCTTTTCAGCAGAATCGCTTATATACGTTTCGAGGAGAAGAGA 25025859 Query 37469 ATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTC 37528 |||||| || ||||| || ||||||||||| || ||||| || || ||| | ||||| Sbjct 25025860 ATACATCTCTGAGTGGATGTTTTCAATAGCGATTTGAAACCCGTAGAAAGCACGCGCTTC 25025919 Query 37529 AGATAATTGAACATCGTT 37546 ||| | |||||| || || Sbjct 25025920 AGAGATTTGAACTTCTTT 25025937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592300607539480