Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_018452.1 Length=61847 Score E Sequences producing significant alignments: (Bits) Value seq1013 309 1e-79 seq1089 102 3e-17 >seq1013 Length=3469 Score = 309 bits (342), Expect = 1e-79 Identities = 271/335 (81%), Gaps = 2/335 (1%) Strand=Plus/Minus Query 9963 CATGGCATCCGTCAACAAAGTCATCCTCGTCGGCAATCTCGGCGCCGACCCGGAAACCCG 10022 ||||||||| || |||||||| ||||||||||||||||||||||| || |||||| || Sbjct 334 CATGGCATCAGTGAACAAAGTGATCCTCGTCGGCAATCTCGGCGCAGATCCGGAAGTGCG 275 Query 10023 CTACCTCCCGAGCGGCGACGCAATCTCCAACATCCGCCTCGCTACGACCGATCGCTACAA 10082 | || |||||||||||||| || | ||||| || ||||| ||||||||||||||||| Sbjct 274 ACATCTGCCGAGCGGCGACGCGGTCGCGAACATTCGTCTCGCGACGACCGATCGCTACAA 215 Query 10083 GGACAAGGCGAGCGGCGAGATGAAGGA-ATCGACCGAATGGCACCGCGTCAGCTTCTTCG 10141 |||||| || ||||| | || || ||| ||||| ||||| || ||| |||||| | Sbjct 214 GGACAAAGCATCAGGCGACTTCAAAGAGATC-ACCGAGTGGCATCGTGTCGCCTTCTTTG 156 Query 10142 GCCGCCTCGCCGAGATCGTCGACGAGTACCTGCGCAAGGGCGCGCCGGTCTACATCGAGG 10201 ||||||| || ||||||||| | |||| ||| ||||| | | ||||||||||| | Sbjct 155 GCCGCCTTGCGGAGATCGTCAGCCAGTATCTGAAAAAGGGATCTTCCGTCTACATCGAAG 96 Query 10202 GCCGCATCCGCACGCGGAAGTGGCAGGATAACGCCGGCCAGGATCGCTACACGACCGAGA 10261 ||||||||||||||||||| ||||||| | | |||||||||||||||| ||||||||| Sbjct 95 GCCGCATCCGCACGCGGAAATGGCAGGGGCAAGACGGCCAGGATCGCTACTCGACCGAGA 36 Query 10262 TCGTCGCCGAGAAGATGCAGATGCTCGGCGACCGC 10296 | ||||| || | |||||||||||||||| |||| Sbjct 35 TTGTCGCTGACCAAATGCAGATGCTCGGCGGCCGC 1 >seq1089 Length=3005 Score = 102 bits (112), Expect = 3e-17 Identities = 199/293 (68%), Gaps = 17/293 (6%) Strand=Plus/Plus Query 21245 AAGGTGACGGTATGACGGTCTACGTCGACGACATGTACCTGTACCCGATCGGCGAGTACA 21304 ||||||| | ||||| |||||||||||||||||||| | | ||||| ||||| | || Sbjct 2332 AAGGTGATGCAATGACAGTCTACGTCGACGACATGTATCGCCATCCGATAGGCGAATTCA 2391 Query 21305 AGGCGCCGTTCTCCGGCCGCACCATGAAGATGTCGCACATGATCGCGGACACGCATGAGG 21364 | || | | || ||| | |||||||||||| | ||||||||||| || | Sbjct 2392 AAACGGCAAGC---GGACGCGTCTACAAGATGTCGCACCTCATCGCGGACACCTCCGACG 2448 Query 21365 AGCTGGTCGAGATGGCACGCGCCATCGGCCTGAACCCGCGCCATATCCAGAAGCGCGACA 21424 || | ||| |||| |||| |||| | | |||||| |||||| | |||| | Sbjct 2449 AGTTACTCGCCATGGTCAGCGCAATCGACGTCAACCCGAAGTGGATCCAGCACCGCGGTA 2508 Query 21425 CGCACGGCGAGCACTTCGACATCTGCCTGAGCTATC-GCAAGCG------GGCGATCGCG 21477 ||| || |||||| ||||||||| || ||| ||||||| || ||||| Sbjct 2509 CGCGCGACGAGCATTTCGACATC-------GCGATCAGCAAGCGTGCCGCCGCCATCGCC 2561 Query 21478 GCCGGCGCCGTGCAGATCACCATGCGCCAGTGCTCGGCGATGTGCATCCGCCG 21530 |||||||| || | ||||| | |||||| |||||| || ||||| Sbjct 2562 GCCGGCGCAGTCCCAATCACGTTCGAGCAGTGCGGCGCGATGAACAAGCGCCG 2614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 197783663301246