Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq1 150 3e-31 seq276 129 1e-24 seq7 129 1e-24 seq8 120 6e-22 >seq1 Length=52991155 Score = 150 bits (166), Expect = 3e-31 Identities = 372/558 (67%), Gaps = 11/558 (2%) Strand=Plus/Minus Query 48131 CAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGA 48190 || || || || | |||||| |||||||| || || ||| |||| |||||| | Sbjct 19457521 CAAGCGAAATCACAGTGCAATCCTTCGTCGCGTGAAATAAGCTCGTTTGAGAAGGTTAAT 19457462 Query 48191 CCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAG 48250 || ||||| | || | || ||| | ||||||||| || ||| || ||||| ||| Sbjct 19457461 CCCGGCATTAAACCGCGCTTTTTCAACCAGAAAATCGCACAGAAGCTTCCGGAGAAAAAG 19457402 Query 48251 ATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAG 48310 || || || || || ||||| || || ||| | |||||| || |||| | | Sbjct 19457401 ATTCCTTCAACACAAGCAAACGCAACGATTCTTTCTGCAAAAGAATCG--CTTGAATC-G 19457345 Query 48311 ATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGG 48370 ||||| | |||||| || || |||||| ||| ||||| || || || || || | Sbjct 19457344 ATCCATTTCATCGCCCAATCAGCTTTCTTCGCGATACATGGAATTGTTTCAATTGCATGA 19457285 Query 48371 AAGA---GCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTAC 48427 || | | ||||| ||| | | || | ||| || ||| || | ||| Sbjct 19457284 AATAAGCGATTCTTT---TCAGCGGAATCGCTTATATACGTTTCGAGGAGAAGAGAATAC 19457228 Query 48428 ATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAAC 48487 ||||||||||| | || || || || |||||||| ||||||||||| | || ||| | Sbjct 19457227 ATCTCAGAGTGGATGTTTTCAATTGCAATCTGGAAACCGTAGAAGGCACGTGCTTCAGAG 19457168 Query 48488 ACCTGCACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATCCCATCTGAAGC 48546 || || | |||| | ||||| || || ||||| ||| ||| || || || || || Sbjct 19457167 ACTTGGATTTCTTTCATAAATCT-ACCGGCGAGATTTTCAAGGACGATGCCGTCGGAGGC 19457109 Query 48547 AGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCA 48606 ||| |||||||| |||||||| | ||| ||||| ||| || |||||| | ||| Sbjct 19457108 AGCGAAGAAGGCGAGGACATGAGAGATGAAGTGGCGTTCGCCGTCGGTGAGGTTTTGCCA 19457049 Query 48607 GCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTT 48666 | || | || | || || |||||||| | |||||||| || || ||||| Sbjct 19457048 GTGCTTGAGATCGGAGGAAAGATCGACTTCTTCAGCGGTCCAGAATGAGGCTTCGGCTTT 19456989 Query 48667 TTTGTACATGCCCCATAT 48684 ||||||||| |||| || Sbjct 19456988 TTTGTACATTTCCCAGAT 19456971 >seq276 Length=24472 Score = 129 bits (142), Expect = 1e-24 Identities = 372/562 (66%), Gaps = 19/562 (3%) Strand=Plus/Minus Query 48131 CAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGA 48190 || ||||| || | ||||| |||||||| || || ||| |||| ||||| | Sbjct 23010 CAAGCAAAATCACAGTGCAGACCTTCGTCACGTGAAATAAGCTCGTTTGAGAATGTTAAC 22951 Query 48191 CCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAG-CCAGAGAAGAA 48249 || ||||| | || | || ||| | ||||||||| || || |||| || |||||||| Sbjct 22950 CCTGGCATTAAACCGCGCTTTTTCAACCAGAAAATCGC-GCAAAAGCTTCCGGAGAAGAA 22892 Query 48250 GATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGA 48309 || || || || || || || || || || | |||||| || |||| | | Sbjct 22891 AATTCCTTCTACACAAGCAAATGCAACGATTCTTTCAGCAAAAGAATCG--CTTGAATCA 22834 Query 48310 GATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCG 48369 ||||| | ||||| || ||||| ||| ||| ||||| || ||||| || || | Sbjct 22833 -ATCCATTTCATTGCCCAATCAGCCTTTTTCGCGATACATGGAATTGTCTCAATTGCATG 22775 Query 48370 GAAGA---GCTTCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGC 48423 || | | ||||| ||| | | || | ||| || | |||| || | Sbjct 22774 AAATAAGCGATTCTTT---TCAGCAGAATCGCTTATATATGTTTCAATGAGAAGG---GA 22721 Query 48424 GTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTC 48483 |||||||||||| || | || || || || || ||||| || |||||||| | || || Sbjct 22720 GTACATCTCAGAATGGATGTTTTCAATTGCAATTTGGAAACCATAGAAGGCACGTGCTTC 22661 Query 48484 AAACACCTGCACTTCTGTGGAGAATCTCTCCAGCA-GATTCTCATTGACTATCCCATCTG 48542 | | || |||||| | |||||| ||| ||| |||| ||| ||| || || |||| Sbjct 22660 GGAGATTTGGACTTCTTTCATGAATCT-TCCGGCAAGATTTTCAAGGACAATTCCGTCTG 22602 Query 48543 AAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCAT 48602 | || || ||||||||||| || || | ||| ||||| ||| || ||||| | Sbjct 22601 AGGCGGCGAAGAAGGCAAGAACGTGAGAGATGAAGTGGCGTTCGCCGTCTGTGAGGTTGT 22542 Query 48603 TCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTG 48662 ||||| || | || | || || |||||||| | |||||||| || || | Sbjct 22541 TCCAGTGCTTGAGATCGGAGGAAAGATCAACTTCTTCGGCGGTCCAGAATGAGGCTTCGG 22482 Query 48663 CTTTTTTGTACATGCCCCATAT 48684 ||||||||||||| |||| || Sbjct 22481 CTTTTTTGTACATTTCCCAGAT 22460 >seq7 Length=49172423 Score = 129 bits (142), Expect = 1e-24 Identities = 372/562 (66%), Gaps = 19/562 (3%) Strand=Plus/Plus Query 48131 CAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGA 48190 || ||||| || | ||||| |||||||| || || ||| |||| ||||| | Sbjct 10197078 CAAGCAAAATCACAGTGCAGACCTTCGTCACGTGAAATAAGCTCGTTTGAGAATGTTAAC 10197137 Query 48191 CCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAG-CCAGAGAAGAA 48249 || ||||| | || | || ||| | ||||||||| || || |||| || |||||||| Sbjct 10197138 CCTGGCATTAAACCGCGCTTTTTCAACCAGAAAATCGC-GCAAAAGCTTCCGGAGAAGAA 10197196 Query 48250 GATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGA 48309 || || || || || || || || || || | |||||| || |||| | | Sbjct 10197197 AATTCCTTCTACACAAGCAAATGCAACGATTCTTTCAGCAAAAGAATCG--CTTGAATCA 10197254 Query 48310 GATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCG 48369 ||||| | ||||| || ||||| ||| ||| ||||| || ||||| || || | Sbjct 10197255 -ATCCATTTCATTGCCCAATCAGCCTTTTTCGCGATACATGGAATTGTCTCAATTGCATG 10197313 Query 48370 GAAGA---GCTTCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGC 48423 || | | ||||| ||| | | || | ||| || | |||| || | Sbjct 10197314 AAATAAGCGATTCTTT---TCAGCAGAATCGCTTATATATGTTTCAATGAGAAGG---GA 10197367 Query 48424 GTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTC 48483 |||||||||||| || | || || || || || ||||| || |||||||| | || || Sbjct 10197368 GTACATCTCAGAATGGATGTTTTCAATTGCAATTTGGAAACCATAGAAGGCACGTGCTTC 10197427 Query 48484 AAACACCTGCACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATCCCATCTG 48542 | | || |||||| | |||||| ||| || ||||| ||| ||| || || |||| Sbjct 10197428 GGAGATTTGGACTTCTTTCATGAATCT-TCCGGCAAGATTTTCAAGGACAATTCCGTCTG 10197486 Query 48543 AAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCAT 48602 | || || ||||||||||| || || | ||| ||||| ||| || ||||| | Sbjct 10197487 AGGCGGCGAAGAAGGCAAGAACGTGAGAGATGAAGTGGCGTTCGCCGTCTGTGAGGTTGT 10197546 Query 48603 TCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTG 48662 ||||| || | || | || || |||||||| | |||||||| || || | Sbjct 10197547 TCCAGTGCTTGAGATCGGAGGAAAGATCAACTTCTTCGGCGGTCCAGAATGAGGCTTCGG 10197606 Query 48663 CTTTTTTGTACATGCCCCATAT 48684 ||||||||||||| |||| || Sbjct 10197607 CTTTTTTGTACATTTCCCAGAT 10197628 >seq8 Length=45569985 Score = 120 bits (132), Expect = 6e-22 Identities = 365/558 (65%), Gaps = 11/558 (2%) Strand=Plus/Plus Query 48131 CAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGA 48190 || ||||| || | ||| ||||||||||| || || ||| |||| ||||| | Sbjct 25025570 CAAGCAAAATCACAGTGTAAGCCTTCGTCGCGTGAAATAAGCTCGTTTGAGAAAGTTAAT 25025629 Query 48191 CCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAG 48250 || ||||| | || | | ||| | ||||||||| || ||| || |||||||| Sbjct 25025630 CCCGGCATTAAACCGCGTTTTTTCAACCAGAAAATCGCACAGAAGCTTCCGGAGAAGAAA 25025689 Query 48251 ATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAG 48310 || || || || ||||| || || || ||| | |||||| || |||| | | Sbjct 25025690 ATTCCTTCAACACAAGCGAAAGCAACGATTCTTTCTGCAAAAGAATCG--CTTGAATC-G 25025746 Query 48311 ATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGG 48370 ||||| | ||||| || || ||||| || || || || || || || || | Sbjct 25025747 ATCCATTTCAAAGCCCAATCAGCTTTCTTAGCAATACACGGAATTGTGTCAATTGCGTGA 25025806 Query 48371 AAGA---GCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTAC 48427 || | | ||||| ||| | | || | ||| || ||| || | ||| Sbjct 25025807 AATAATCGATTCTTT---TCAGCAGAATCGCTTATATACGTTTCGAGGAGAAGAGAATAC 25025863 Query 48428 ATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAAC 48487 ||||| ||||| | || || |||||||| || ||||||||||| || | || ||| | Sbjct 25025864 ATCTCTGAGTGGATGTTTTCAATAGCGATTTGAAACCCGTAGAAAGCACGCGCTTCAGAG 25025923 Query 48488 ACCTGCACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATCCCATCTGAAGC 48546 | || |||||| | |||||| ||| || ||||| || ||| || || || || || Sbjct 25025924 ATTTGAACTTCTTTCATGAATCT-TCCGGCGAGATTTTCGAGGACGATACCGTCGGAGGC 25025982 Query 48547 AGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCA 48606 || |||||||| |||| || | ||| ||||| ||| || |||||| ||||| Sbjct 25025983 GGCGAAGAAGGCGAGGATGTGAGAGATGAAGTGGCGTTCGCCGTCGGTGAGGTTGTTCCA 25026042 Query 48607 GCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTT 48666 | || | || | || || |||||||| | |||||||| || || ||||| Sbjct 25026043 GTGTTGAAGATCGGAGGAAAGATCGACTTCTTCGGCGGTCCAGAAAGAGGCTTCGGCTTT 25026102 Query 48667 TTTGTACATGCCCCATAT 48684 ||||||||| |||| || Sbjct 25026103 TTTGTACATTTCCCAGAT 25026120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931507334222080