Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq4 122 7e-23 seq6 105 6e-18 seq8 96.9 3e-15 >seq4 Length=56582383 Score = 122 bits (134), Expect = 7e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || |||||||| || ||||||||||| ||| || |||| | ||| Sbjct 31260708 ATGCAAATCTTCGTGAAAACATTGACTGGTAAAACCATCACCCTTGAGGTGGAATCATCA 31260649 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || ||||| || || |||||||||||| | || ||||| Sbjct 31260648 GATACAATTGATAATGTCAAGGCCAAGATTCAAGACAAAGAGGGAATCCCTCCTGATCAG 31260589 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| ||||||||||| || |||||| | || ||| | ||| | || ||||||||| Sbjct 31260588 CAGAGGCTTATCTTTGCTGGGAAACAACTCGAGGATGGAAGAACCCTAGCTGATTATAAC 31260529 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || || || |||||||| || || |||| | ||||| |||| || || Sbjct 31260528 ATCCAGAAGGAATCTACCCTTCATTTGGTGCTTAGATTGAGAGGTGGAAT 31260479 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| |||||||| || ||||| || || ||||| || ||| || ||| | || Sbjct 31288215 ATGCAGATATTTGTGAAGACATTGACCGGAAAAACAATCACCCTTGAGGTTGAATCATCT 31288156 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || ||||| || ||| ||||||||||| | || ||||| Sbjct 31288155 GATACAATTGATAATGTCAAGGCCAAGATCCAAGACAAAGAGGGTATCCCTCCTGATCAG 31288096 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| ||||||||||| || ||||| | || ||| | ||| | || ||||||||| Sbjct 31288095 CAGAGGCTTATCTTTGCAGGGAAACAGCTCGAGGATGGAAGAACCCTAGCTGATTATAAC 31288036 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || || || |||||||| || || |||| | |||||| |||| || || Sbjct 31288035 ATCCAGAAGGAATCTACCCTTCATCTGGTGCTTAGATTAAGAGGTGGAAT 31287986 Score = 102 bits (112), Expect = 7e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||| ||||| ||||| || || || || |||||||| ||| || ||| | || Sbjct 31260481 AATGCAGATATTCGTAAAGACTTTGACTGGAAAAACCATCACCTTAGAGGTTGAATCCTC 31260422 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || ||||| || || ||||||||||| | || ||||| Sbjct 31260421 GGATACCATTGATAATGTCAAGGCCAAGATACAGGACAAAGAGGGTATCCCTCCTGATCA 31260362 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||| ||||||||||| || |||||| | |||||| | || | || |||||||| Sbjct 31260361 GCAGAGGCTTATCTTTGCAGGGAAACAACTAGAAGATGGAAGGACCCTAGCTGATTATAA 31260302 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||| || || |||||||| || || |||| | ||||| |||| || || Sbjct 31260301 CATCCAGAAGGAATCTACCCTTCATTTGGTGCTTAGATTGAGAGGCGGAAT 31260251 Score = 100 bits (110), Expect = 2e-16 Identities = 114/152 (75%), Gaps = 1/152 (1%) Strand=Plus/Minus Query 28632 AAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCG 28691 ||||||| | || ||||||||||| | || ||| || ||||| || || || ||| Sbjct 31287224 AAGCAAAGATTCAG-GACAAAGAGGGCATTCCTCCAGACCAGCAGAGGCTAATTTTCGCG 31287166 Query 28692 GGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACT 28751 ||||| || ||||||||| ||| |||| |||||||| || || |||||||||||| Sbjct 31287165 GGCAAGCAGTTGGAAGATGGCCGTACTCTGGCTGATTATAATATCCAGAAAGAATCTACT 31287106 Query 28752 CTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||| |||| || || | ||||| ||||| Sbjct 31287105 CTGCATTTGGTTTTGAGGCTTCGAGGTGGGAT 31287074 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||||||||| || ||| | || || || || |||||| || |||| || Sbjct 31259796 ATGCAAATATTTGTGAAGACACTTACTGGGAAGACTATTACCTTGGAGGTGGAAAGCTCT 31259737 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | || ||| || || || ||||| | ||| |||||| Sbjct 31259736 GATACTATTGATAATGTGAAAGCAAAGATACAAGATAAGGAGGGTATTCCCCCAGATCAG 31259677 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| ||||| ||||| ||||| || ||||| ||| | ||| |||| ||||| || Sbjct 31259676 CAGAGGCTTATTTTTGCTGGCAAGCAGTTGGAGGATGGTCGTACTCTGGCAGATTACAAT 31259617 Query 28734 ATTCAAAAAGAATCTACTCTGCA 28756 ||||| ||||||||||| ||||| Sbjct 31259616 ATTCAGAAAGAATCTACCCTGCA 31259594 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| |||||||| || || |||||||| || || || ||| Sbjct 31306680 ATGCAGATCTTTGTGAAAACATTGACAGGAAAAACCATCACTCTTGAGGTAGAGAGTTCC 31306621 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || ||||| || ||| ||||||||||| | || ||||| Sbjct 31306620 GATACAATTGATAATGTCAAGGCCAAGATCCAAGACAAAGAGGGTATCCCTCCTGATCAG 31306561 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| ||||||||||| || ||||| | || ||| | || | || ||||||||| Sbjct 31306560 CAGAGGCTTATCTTTGCAGGTAAACAGCTCGAGGATGGAAGAATCCTAGCTGATTATAAC 31306501 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || || || |||||||| || || |||| | ||||| |||| || || Sbjct 31306500 ATCCAGAAGGAATCTACCCTTCATTTGGTGCTTAGATTGAGAGGTGGAAT 31306451 Score = 84.2 bits (92), Expect = 2e-11 Identities = 171/250 (68%), Gaps = 3/250 (1%) Strand=Plus/Minus Query 28535 TATAAGTGATTGTGTAAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTAC 28594 ||| | ||||| || | | |||||||| ||||| |||||||| || || ||||| || || Sbjct 31288461 TATGATTGATT-TGAACAGATGCAAATCTTTGTGAAAACATTGACTGGCAAAACTATCAC 31288403 Query 28595 CGCCGAAACGGAACCTTCAGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAG 28653 | ||| ||| ||| || || | | | | | || || || | || ||||| | Sbjct 31288402 CCTCGAGGTGGAGAGTTCTGATACCATAGACAACGTTAAAGCTAAGATTCAA-GACAAGG 31288344 Query 28654 AGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTA 28713 | || | || ||||| || || ||||| ||||| || ||||||||||||||| Sbjct 31288343 AAGGTATTCCTCCCGATCAGCAAAGGCTTATATTTGCTGGTAAACAATTGGAAGATGGCC 31288284 Query 28714 AAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTAC 28773 || | || ||||| ||||| ||||| ||||| || || ||| | || | |||| Sbjct 31288283 GCACCCTTGCGGATTACAACATCCAAAAGGAATCCACCCTTCACCTTGTGCTGCGATTGA 31288224 Query 28774 GAGGAGGGAT 28783 |||| || || Sbjct 31288223 GAGGTGGCAT 31288214 Score = 82.4 bits (90), Expect = 6e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 28668 GATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGAT 28727 ||||| ||||||||||||||||| || |||||| | |||||| | || | || ||| Sbjct 31287645 GATCAGCAGAGACTTATCTTTGCAGGGAAACAACTTGAAGATGGAAGGACCCTTGCTGAT 31287586 Query 28728 TATAACATTCAAAAAGAATCTACTCTGCACATGGTATT 28765 ||||| || ||||| ||||| |||||||| |||| || Sbjct 31287585 TATAATATCCAAAAGGAATCCACTCTGCATTTGGTTTT 31287548 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||||||||| || || | || || || || || ||| || ||| || Sbjct 35111141 ATGCAAATATTTGTGAAGACTCTCACTGGAAAGACAATCACCCTTGAGGTGGAGAGCTCT 35111082 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | || | ||| || || ||||||||||| | || ||| || Sbjct 35111081 GATACCATTGACAATGTTAAGGCCAAGATACAAGACAAAGAGGGTATCCCACCAGACCAG 35111022 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| || |||||||| || ||||| | |||||| | ||| |||||||||||||| Sbjct 35111021 CAGAGGCTCATCTTTGCTGGAAAACAGCTTGAAGATGGCAGAACATTGGCCGATTATAAC 35110962 Query 28734 ATTCAAAAAGAATCTACTCTGCA 28756 || || ||||| || ||||| || Sbjct 35110961 ATCCAGAAAGAGTCAACTCTTCA 35110939 >seq6 Length=35275713 Score = 105 bits (116), Expect = 6e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| || || || || || || |||||||| || |||| |||| Sbjct 24039767 ATGCAGATCTTTGTGAAGACTTTGACAGGAAAGACCATTACATTGGAGGTGGAAAGTTCA 24039826 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | ||| ||||||| ||||| || ||| | || ||||||| Sbjct 24039827 GACACCATTGATAATGTTAAGGCAAAAATCCAGGACAAGGAAGGAATCCCACCAGATCAA 24039886 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| | |||||||| || || |||||||| ||| | ||| | || || || ||| Sbjct 24039887 CAGAGGTTGATCTTTGCTGGGAAGCAATTGGAGGATGGAAGAACCCTTGCTGACTACAAC 24039946 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTA 28766 ||||| ||||| |||||||| ||| | || ||| Sbjct 24039947 ATTCAGAAAGAGTCTACTCTTCACCTTGTTTTA 24039979 >seq8 Length=45569985 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||||||||| || || | || || || || |||||| || ||| || Sbjct 35000594 ATGCAAATATTTGTGAAGACTCTCACAGGAAAGACAATTACCCTTGAGGTGGAGAGCTCT 35000535 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | || ||||| || || ||||||||||| | || |||||| Sbjct 35000534 GACACCATTGACAATGTCAAGGCCAAGATACAAGACAAAGAGGGTATCCCACCAGATCAG 35000475 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| || |||||||| || ||||| | |||||| | ||| |||| ||||||||| Sbjct 35000474 CAGAGGCTCATCTTTGCTGGAAAACAGCTTGAAGATGGCAGAACCTTGGCTGATTATAAC 35000415 Query 28734 ATTCAAAAAGAATCTACTCTGCA 28756 ||||| ||||| || ||||| || Sbjct 35000414 ATTCAGAAAGAGTCAACTCTCCA 35000392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425393461233873