Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_020205.1 Length=42963 Score E Sequences producing significant alignments: (Bits) Value seq1130 241 4e-59 >seq1130 Length=2756 Score = 241 bits (266), Expect = 4e-59 Identities = 281/377 (75%), Gaps = 2/377 (1%) Strand=Plus/Plus Query 453 CATGGCAATCGAAAGCAAGATCGAATGGACCGACGCCACGTTCAATCCGTGGATCGGCTG 512 |||||| |||| ||||| ||||||||||| ||||| || |||||||||||||| ||||| Sbjct 1876 CATGGCGGTCGATAGCAAAATCGAATGGACGGACGCAACTTTCAATCCGTGGATTGGCTG 1935 Query 513 CACCAAAATCAGCCCGGCGTGTGACCACTGCTACGCCAGC-GTGTCCACGCCCACGCGCC 571 ||| | || || || ||||| ||||| || ||| || || || || ||||| Sbjct 1936 CACGCGCGTGTCGCCCGCCTGCGACCATTGCTATGC-AGCTGTCTCGACACCTGCGCGCA 1994 Query 572 GGTTCGGCGTGAAGTGGGGCGCAGGCGAGGAACGCCGCCGCACCGCGCCTTCGAACTGGC 631 | ||||||| | |||||| | || || || || || ||| || || |||| Sbjct 1995 CGCTCGGCGTCGAATGGGGCCCGCACGCCGAGCGTCGGCGAACCAGCCCGGGCAATTGGC 2054 Query 632 AGCTGCCGCTGCGGTGGAACGCGCAGCACGATCAGTTCTTCGCGGAGAACGGCCGGCGTC 691 |||| | || ||||||||||||||||| |||||| || ||| ||||||| |||| Sbjct 2055 GCACGCCGATCCGCTGGAACGCGCAGCACGACTCGTTCTTTGCTGAGCACGGCCGTCGTC 2114 Query 692 GCCGCGTGTTCTGCGCGAGCCTGGCCGACGTGTTCGACAACGAAGTGGACCCGTCGTGGC 751 |||||||||||||||| || ||||||||||||||||||| || | |||| |||| Sbjct 2115 GCCGCGTGTTCTGCGCATCGCTCGCCGACGTGTTCGACAACGCGGTCAATCCGTACTGGC 2174 Query 752 GCGCCGACCTGTTCGCGTTGATCGAAGCCACGCCGAACCTGGACTGGCTGCTGCTGACCA 811 |||| || ||||||| | ||||| || || ||||| |||||| |||||||||| | Sbjct 2175 GCGCGGATCTGTTCGACCTAATCGAGCAGACCCCCAACCTTGACTGGTTGCTGCTGACGA 2234 Query 812 AGCGCATCGGCAACGTG 828 |||| |||||||| ||| Sbjct 2235 AGCGAATCGGCAATGTG 2251 Score = 86.0 bits (94), Expect = 2e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 1134 GGATTGGGTGATCGTAGGTGGCGAAAGCGGCCATGGCGCCAGGCCCATGAACCCTACGTG 1193 |||||||||||| || ||||||||||| |||| ||| | || ||| | || || Sbjct 2470 GGATTGGGTGATTTGCGGCGGCGAAAGCGGGCATGCCGCGCGCCCGATGCATCCCGATTG 2529 Query 1194 GGCGCGATTCCTGCGCGATCAGTGCGAAGCCGCTGGCGTGCCTTTCCTGTTCAAGCAGTG 1253 || || ||||||||||||||| || || ||||| || || |||||||||| || Sbjct 2530 GGTTCGCGCGCTGCGCGATCAGTGCACGGCGGCAGGCGTCCCGTTTTTGTTCAAGCAATG 2589 Query 1254 GGGCGAATGG 1263 |||||||||| Sbjct 2590 GGGCGAATGG 2599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137356432674950