Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18]
2,187 sequences; 412,924,424 total letters
Query= NC_020205.1
Length=42963
Score E
Sequences producing significant alignments: (Bits) Value
seq1130 241 4e-59
>seq1130
Length=2756
Score = 241 bits (266), Expect = 4e-59
Identities = 281/377 (75%), Gaps = 2/377 (1%)
Strand=Plus/Plus
Query 453 CATGGCAATCGAAAGCAAGATCGAATGGACCGACGCCACGTTCAATCCGTGGATCGGCTG 512
|||||| |||| ||||| ||||||||||| ||||| || |||||||||||||| |||||
Sbjct 1876 CATGGCGGTCGATAGCAAAATCGAATGGACGGACGCAACTTTCAATCCGTGGATTGGCTG 1935
Query 513 CACCAAAATCAGCCCGGCGTGTGACCACTGCTACGCCAGC-GTGTCCACGCCCACGCGCC 571
||| | || || || ||||| ||||| || ||| || || || || |||||
Sbjct 1936 CACGCGCGTGTCGCCCGCCTGCGACCATTGCTATGC-AGCTGTCTCGACACCTGCGCGCA 1994
Query 572 GGTTCGGCGTGAAGTGGGGCGCAGGCGAGGAACGCCGCCGCACCGCGCCTTCGAACTGGC 631
| ||||||| | |||||| | || || || || || ||| || || ||||
Sbjct 1995 CGCTCGGCGTCGAATGGGGCCCGCACGCCGAGCGTCGGCGAACCAGCCCGGGCAATTGGC 2054
Query 632 AGCTGCCGCTGCGGTGGAACGCGCAGCACGATCAGTTCTTCGCGGAGAACGGCCGGCGTC 691
|||| | || ||||||||||||||||| |||||| || ||| ||||||| ||||
Sbjct 2055 GCACGCCGATCCGCTGGAACGCGCAGCACGACTCGTTCTTTGCTGAGCACGGCCGTCGTC 2114
Query 692 GCCGCGTGTTCTGCGCGAGCCTGGCCGACGTGTTCGACAACGAAGTGGACCCGTCGTGGC 751
|||||||||||||||| || ||||||||||||||||||| || | |||| ||||
Sbjct 2115 GCCGCGTGTTCTGCGCATCGCTCGCCGACGTGTTCGACAACGCGGTCAATCCGTACTGGC 2174
Query 752 GCGCCGACCTGTTCGCGTTGATCGAAGCCACGCCGAACCTGGACTGGCTGCTGCTGACCA 811
|||| || ||||||| | ||||| || || ||||| |||||| |||||||||| |
Sbjct 2175 GCGCGGATCTGTTCGACCTAATCGAGCAGACCCCCAACCTTGACTGGTTGCTGCTGACGA 2234
Query 812 AGCGCATCGGCAACGTG 828
|||| |||||||| |||
Sbjct 2235 AGCGAATCGGCAATGTG 2251
Score = 86.0 bits (94), Expect = 2e-12
Identities = 97/130 (75%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 1134 GGATTGGGTGATCGTAGGTGGCGAAAGCGGCCATGGCGCCAGGCCCATGAACCCTACGTG 1193
|||||||||||| || ||||||||||| |||| ||| | || ||| | || ||
Sbjct 2470 GGATTGGGTGATTTGCGGCGGCGAAAGCGGGCATGCCGCGCGCCCGATGCATCCCGATTG 2529
Query 1194 GGCGCGATTCCTGCGCGATCAGTGCGAAGCCGCTGGCGTGCCTTTCCTGTTCAAGCAGTG 1253
|| || ||||||||||||||| || || ||||| || || |||||||||| ||
Sbjct 2530 GGTTCGCGCGCTGCGCGATCAGTGCACGGCGGCAGGCGTCCCGTTTTTGTTCAAGCAATG 2589
Query 1254 GGGCGAATGG 1263
||||||||||
Sbjct 2590 GGGCGAATGG 2599
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 137356432674950
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |