Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq3 136 2e-27 >seq3 Length=55515152 Score = 136 bits (150), Expect = 2e-27 Identities = 285/425 (67%), Gaps = 0/425 (0%) Strand=Plus/Plus Query 25931 TCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCT 25990 |||||||| | ||| || | ||| | || ||||||||||||| || | ||||| Sbjct 2060799 TCCATAAAGAGATCAGGCACCCAAAGGGCGTAAAATAAATCTCGAGCACGTTGCTCTTCC 2060858 Query 25991 TTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAA 26050 ||||| ||||| |||| | || | ||| ||||| ||||| | |||||||| || || Sbjct 2060859 TTTCCATGATTTATTTTCAATTCCAGGAAGTCAAATATATCAGCATGCCATGGCTCCAAG 2060918 Query 26051 TAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCA 26110 || | ||||||| |||||| || || ||||| || ||||| || || | |||||| ||| Sbjct 2060919 TACACAGCAAAAGCACCTTTCCTCTTGCCTCCCCCCTGATCAACATAACGTGCAGTATCA 2060978 Query 26111 TTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTG 26170 ||||| || | ||| ||||| | ||| | || ||| ||||| | |||| | Sbjct 2060979 TTGAACACACGAAGCATCGGAACAATACCATTAGACGTTCCATTTGTTCCCCGAATGTAA 2061038 Query 26171 GATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATA 26230 ||| | | |||| |||| || || ||| || || ||||| |||| ||| Sbjct 2061039 CTACCTTGGGCACGTATATTGTGAACAGAAACACCAATCCCTCCAGCAGATTTACTAATG 2061098 Query 26231 GCTGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAAT 26290 | ||||| || | |||||| |||| || | || ||||| ||||||| | | Sbjct 2061099 ACAGCACACTCCTTCAATGTATCATAAATCCCCTCAATACTATCCTCTTTCATGCAAACC 2061158 Query 26291 AAAAAACAAGAAGATAATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCA 26350 || || ||| | || || | || |||||| | || || | ||| || | |||| Sbjct 2061159 AAGAAGCAACTACTCAACTGAGGCCTAGGTGTTCCGGCGTTGAAAAGTGTAGGAGAAGCA 2061218 Query 26351 TGAGT 26355 ||||| Sbjct 2061219 TGAGT 2061223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253033255456025