Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_021343.1 Length=35430 Score E Sequences producing significant alignments: (Bits) Value seq1748 600 3e-167 seq975 199 9e-47 seq1252 89.7 1e-13 >seq1748 Length=1413 Score = 600 bits (664), Expect = 3e-167 Identities = 778/1068 (73%), Gaps = 14/1068 (1%) Strand=Plus/Minus Query 32773 GCTGCTCACGGTCAGGCGCGAGCCATTCCACAAATCGATGTGCCCGCCGCTCGCGTTCCC 32832 || ||| || || | ||||||||| ||||| | ||| ||||| ||||| |||| | Sbjct 1140 GCCGCTAACTGTTAAGCGCGAGCCGTTCCAGAGATCTATGTGTCCGCCTGTCGCACTTGA 1081 Query 32833 TGCGGCTTCGCCTTCGCGTGTCCAGTAGCGCGAGAACTGGATTATGCCGGTGCGCCCCTT 32892 ||||| |||||| || |||||||| || |||||||| || || || || || ||||| Sbjct 1080 TGCGGATTCGCCGTCCCGTGTCCAATACTTTGAGAACTGAATGATACCTGTACGGCCCTT 1021 Query 32893 CACCTTGGATTCCCAATCGGCGCCGGTGATGTTTTCGGCTTTCGGCAGTCCCGCGAAGGG 32952 ||||||||||||||||| | || ||||||| ||||||| || || || | || || Sbjct 1020 GACCTTGGATTCCCAATCTGGTCCTGTGATGTCGACGGCTTTGGGAAGACCGGAAAACGG 961 Query 32953 CTGATGTTGTAACCATTCGCCGAGTTCATCGGCGCGCGTCGCCGTCGGCTTTCCATCGAG 33012 || | || ||||||||||| ||||| ||||| || ||||| |||| ||||||||| || Sbjct 960 TTGTAGCTGCAACCATTCGCCTAGTTCGTCGGCACGTGTCGCTGTCGACTTTCCATCAAG 901 Query 33013 CATGATGCGGCCGATGGTCGGTGATCCGGACATGGGCTTGACCGTTTTCTGAGAAAACGA 33072 ||||||||| ||||| ||| || || ||||| || ||||||||||| | ||||| Sbjct 900 CATGATGCGTCCGATTGTCTTTGCACCTGACATCGGATTGACCGTTTTGGAATTGAACGA 841 Query 33073 CTTCATGCCGACGCCGACGCGGTGCAAAGTCACGCTCAAGCGGATAGCGCACTGATTCGT 33132 |||||| |||||||||| || ||||| || ||||| |||||||| ||||| |||||| | Sbjct 840 CTTCATATCGACGCCGACACGATGCAACGTGACGCTTAAGCGGATGGCGCATTGATTCTT 781 Query 33133 ATAATCCGGGTTGTCGTACGGGTCGCCGGAAGGGTAGGCGTCCCAAAGTTCTTTGAATGT 33192 ||| |||| | |||||| |||| ||||| ||| || ||||| || |||||||| || Sbjct 780 ATATGCCGGATCGTCGTATGGGTTTCCGGAGGGGAAGTTATCCCACAGCTCTTTGAACGT 721 Query 33193 GATCGCCTTCACGGG----GACTTCTTTTTGCGAGCCCGTCTGTGT-ATTCGTGTCGATC 33247 ||| || || || |||||| ||||| | ||||| || | | || | Sbjct 720 GATTGCAGGAACAGGAATCGACTTC----TGCGATTGTG-GTGTGTCGTTAGAGCGGACC 666 Query 33248 TTGGTCGGTTTCGTGTGCGGCATCG--ATCATTCCCCGTGTTGCTTGGCGAGCGCGTCGT 33305 || | ||||| || |||||||| | || ||| ||||||||||| || || || |||| Sbjct 665 TTCGATGGTTTGGTATGCGGCATTGTTATTCTTCTCCGTGTTGCTTCGCAAGTGCATCGT 606 Query 33306 CGCCCCAATGAACGGTATAGGACCCCGGATCGTCTCCGGTGTAGACGCGCGGCAATGTCC 33365 ||||||| || || ||| | || | ||| ||||| | || |||||||| | | Sbjct 605 CGCCCCAGAAGACTGTGTAGTGGTCAGGGTTGTCGCCGGTATGGATTCGCGGCAAGATTC 546 Query 33366 CGGTCGCGTCCAGGCGGCCGAAATGCACGCGGCCGTCGGCGGTTTCGATGTAGTACGGCA 33425 || ||| | ||||||||| |||||||||| ||||| || |||||||||||||| || | Sbjct 545 CGACCGCACCAAGGCGGCCGGAATGCACGCGCCCGTCTGCTGTTTCGATGTAGTAGGGTA 486 Query 33426 AGCCTTCGACCTGATGCTCGGTCGCCTTCACCTGCTCATCGAACGCGCCTTTCTTGACCG 33485 ||||||| |||||||| ||||| ||| |||| ||||| ||||| || ||||| |||| || Sbjct 485 AGCCTTCCACCTGATGTTCGGTTGCCCTCACTTGCTCGTCGAAGGCCCCTTTTTTGATCG 426 Query 33486 ATGCAACGCCGCCCGTGGCGGTCAGGCTCGATATCACCTTGCCGTGCCCCTCGATCATGT 33545 | || |||||||| || | || |||||||| |||||| | |||| ||||| | || Sbjct 425 ACGCGACGCCGCCAGTTGTAGTGAGGCTCGAAATCACCCTCCCGTTGCCCTCTACTCGGT 366 Query 33546 CGTCGCACCATGATTCACCGCCGAGCGCGGCAATAATTTTCGGTGGCCTCGGGCATCCGC 33605 | |||||||| ||| || ||||||| || | || | || ||| ||||||| ||| Sbjct 365 CATCGCACCACTTTTCGCCACCGAGCGATGCGACGATGTGTGGGGGCGTCGGGCACGCGC 306 Query 33606 ACAGCACAATGTCCTGATCGAGCGCAGACTCTCCCGACATACTCATGCGATATGGGCCGC 33665 | | ||| ||||| ||| |||||| ||| || | | || || ||||| |||| Sbjct 305 AGATCACGATGTCGCCATCTAGCGCAACCTCGCCTATGAATTTTATTCGGTATGGCCCGC 246 Query 33666 CTGATTTCGCGATGACGCCGGTTGCTTTGCAGGCGACGCAGAAGGCCGGGCCGCCGATCA 33725 |||| || ||||| || |||| ||||| ||| ||||| ||| | || || |||| Sbjct 245 CTGACTTGGCGATAACTCCGGGACGCTTGCATGCGCTACAGAAAGCCTGTCCTCCAATCA 186 Query 33726 ACGCGACCTGATGCCCGTTGATTGTGATGGGTGGGCCGCCGTGTG-GCAGGACGGTGCCG 33784 ||| | ||||| | | || ||| | || |||| || | || | | |||| Sbjct 185 GGGCGGCTTGATGACTGCCCATCATGAACGCCGGCCCGCTGTACGCGCTTATCTG-GCCG 127 Query 33785 CCGGTCGACAACGTATCGCCGACGACTGCGATTTTTCGCAACATGCTT 33832 ||| |||| | ||||||||| || ||||||||| ||||| ||||||| Sbjct 126 CCGCTCGAAAGCGTATCGCCTACTACTGCGATTCGTCGCATCATGCTT 79 >seq975 Length=3816 Score = 199 bits (220), Expect = 9e-47 Identities = 198/256 (77%), Gaps = 1/256 (0%) Strand=Plus/Minus Query 32446 TCGGCGGGCCGAACAAGTACACGAACAGATCCATTGTGGCGTGTGTCGTTGCGGCGCATG 32505 ||||||| || |||| |||||||||||| || ||||| | || ||||||| || | Sbjct 3816 TCGGCGGTCCAAACAGGTACACGAACAGTTCGATTGTCGAACCTGCCGTTGCGCGACAGG 3757 Query 32506 CGTCGACGCCGNNNCCGCACGTTCCGGCCGGTGGCGTACACCAATTTTTGATGACCGTGC 32565 |||| || ||| || ||||| ||||| || ||||||||||||| | ||| | ||||| Sbjct 3756 CGTCTACACCGCCACCACACGTCCCGGCAGGCGGCGTACACCAATGCTCGATCATCGTGC 3697 Query 32566 ATAGGCGAGAATCGACCGCAGACCACGCGATCACGCTGACGAGCCCCGCAATCGCGAATC 32625 |||| |||| ||| ||||||| ||| | || ||| |||| || || ||||||| ||||| Sbjct 3696 ATAGACGAGTATCAACCGCAGCCCATGTGACCACACTGAAAAGTCCAGCAATCGAGAATC 3637 Query 32626 CGATCGTTCCCAATAGACGCCGCATTATTTGATTTCCCAGA-AAAGAATTTGCTTCGAAT 32684 ||||||| | ||||||||||| ||||||||| ||| || | |||||| | | ||||||| Sbjct 3636 CGATCGTGCGCAATAGACGCCACATTATTTGGTTTTACAAAGAAAGAACTCGTTTCGAAT 3577 Query 32685 TCCGAAGATCAGACCA 32700 | || || || |||| Sbjct 3576 TTAGACGACCATACCA 3561 >seq1252 Length=2314 Score = 89.7 bits (98), Expect = 1e-13 Identities = 99/129 (77%), Gaps = 6/129 (5%) Strand=Plus/Plus Query 32269 AAAAAGCCCGCAC--ATGCGGGCTTTTTTGTTGGGCCGGA--TCGCATCAGATATGCAGA 32324 ||||||||||| | | ||||||||| ||| ||||| | ||||||||| |||||| Sbjct 2162 AAAAAGCCCGCTCGGAATCGGGCTTTTCTGTCT--CCGGAGATTGCATCAGATGTGCAGA 2219 Query 32325 AGCCGAACGCCGATGAACCACAGTACCCATTGCGCGATCACTGCGCCGACAAGGTACGCG 32384 | || || ||| |||||| || |||||||| | |||| || ||||||||||| ||| Sbjct 2220 ATGCGCACTGCGAGGAACCATAGCACCCATTGGACAATCATGGCACCGACAAGGTAAGCG 2279 Query 32385 ACGACGATA 32393 || |||||| Sbjct 2280 ACTACGATA 2288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113251458712448