Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1299 158 1e-32 seq1 154 2e-31 seq8 152 6e-31 seq276 132 6e-25 seq7 132 6e-25 seq4 96.9 4e-14 seq5 91.5 2e-12 >seq1299 Length=2149 Score = 158 bits (174), Expect = 1e-32 Identities = 246/345 (71%), Gaps = 9/345 (3%) Strand=Plus/Minus Query 1726702 GCGCACGGCGTCGAGTGCCGTCGCCACGCTCCCGTCGGTGCCGTTCTTGAAGCCGAT-GG 1726760 ||| || ||||||| || || |||| | |||||||||||||||||||||||||| || Sbjct 1174 GCGGACCGCGTCGATCGCGATCTTCACGTTGCCGTCGGTGCCGTTCTTGAAGCCGATCGG 1115 Query 1726761 C-CAGCGGCAGTGCCGACGCCATCTCGCGGTGCACCTGGCTCTCGGTCGTGCGCGCGCCC 1726819 | || || || | || || |||| ||||| | ||| |||||||||||| ||||| Sbjct 1114 CGCATCG--AGGCCGGATGCGATCTGCCGGTGAATCTGCGACTCGGTCGTGCGTGCGCCA 1057 Query 1726820 ACGGCGCCCCACGCCACCAGGTCTGCCAAATAAGGGGCCACCAGAGGACTGAGAAACTCG 1726879 | |||||||| | |||||| || | | || || ||| || ||| |||||||||| Sbjct 1056 ATCGCGCCCCAGGACACCAGATCGTCGAGGTAGGGCGCCGTGAGCGGATCGAGAAACTCG 997 Query 1726880 ACGGCCACGGGCTGATCGACGGCGACGACGAGATCGCGCAACAGGCGGCGCG-ACGCCGT 1726938 || || ||| ||| ||| |||| ||| ||| |||||| |||| | | || Sbjct 996 GTCGCGACCGGCATGCCGAGTGCGTTGACG---TCGAGCAGCAGGCGACGCGCAAGACG- 941 Query 1726939 CAGGCCGTCGGCCAGGCGGCACGACCCGTCGAGGTCGGGGTCGCTGGCCAGGCCCTTCCA 1726998 ||| |||||| | | ||| | |||||||| || ||| || || |||||||| Sbjct 940 CAGCCCGTCGTCGACGCGATAGCTTCCGTCGAGCAGCGGATCGTTGATCAACCCCTTCCA 881 Query 1726999 CCCGACGGTCGTGCGCGGCTTTTCGACATAGGCGCGCATGACCAC 1727043 ||||| || |||||||||||||||| || | |||||| || || Sbjct 880 GCCGACCGTGGTGCGCGGCTTTTCGAAGTACGTGCGCATCACGAC 836 >seq1 Length=52991155 Score = 154 bits (170), Expect = 2e-31 Identities = 223/312 (71%), Gaps = 2/312 (1%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||||||||| || || || |||||||| ||||| ||||| | | || | |||||| Sbjct 19457221 GAGTGGATGTTTTCAATTGCAATCTGGAAACCGTAGAAGGCACGTGCTTCAGAGACTTGG 19457162 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 | || ||||| || | ||||| || || || |||||||||||| ||| ||||| Sbjct 19457161 ATTTCTTTCATAAATCTACCGGCGAGATTTTCAAGGACGATGCCGTCGGAGGCAGCGAAG 19457102 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || ||||| || ||| |||||||| ||| ||||| |||| |||||| | Sbjct 19457101 AAGGCGAGGACATGAGAGATGAAGTGGCGTTCGCCGTCGGTGAGGTTTTGCCAGTGCTTG 19457042 Query 869813 GTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTAC 869872 |||| | || || || || || |||||||||| ||||| ||||| ||||||||| Sbjct 19457041 AGATCGGAGGAAAGATCGACTTCTTCAGCGGTCCAGAATGAGGCTTCGGCTTTTTTGTAC 19456982 Query 869873 ATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTCGCGC 869932 || ||||| | || |||| |||| ||||| | | || |||| ||||| | | || Sbjct 19456981 ATTTCCCAGATTTTTGGGTATTGGATTGGGAACATGCAGAATCGGTCTGGGTT-TGGGGC 19456923 Query 869933 AA-CAGGGGTTC 869943 || |||||||| Sbjct 19456922 AAGAAGGGGTTC 19456911 Score = 89.7 bits (98), Expect = 6e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 1592153 GTCGAGCAGCCCACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCT 1592212 || || ||| | || || ||||| | || || || || |||||| | || |||||| Sbjct 45071775 GTTGATCAGGCTACGCTTTTTGACCTCATTCTTGCTGCAAACTACTTGGATATCAAGGGC 45071716 Query 1592213 CTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAG 1592272 |||| |||||| ||| || |||||| |||||||||| || ||| | || ||||| Sbjct 45071715 TTGCTGGATCTTACCTGCCAGATTGTGGCGGACATGATCAAAGGGAAGACACCGGAGGAA 45071656 Query 1592273 ATCCGCAAGACCTTTAACATCAAG 1592296 || || ||||| |||||||||||| Sbjct 45071655 ATTCGAAAGACTTTTAACATCAAG 45071632 >seq8 Length=45569985 Score = 152 bits (168), Expect = 6e-31 Identities = 214/296 (72%), Gaps = 6/296 (2%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||||||||| || || ||||| || || ||||| || || | | | || | | ||| Sbjct 25025870 GAGTGGATGTTTTCAATAGCGATTTGAAACCCGTAGAAAGCACGCGCTTCAGAGATTTGA 25025929 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || |||||||| | ||||| || || ||| ||||| |||||| ||||||||| Sbjct 25025930 ACTTCTTTCATGAATCTTCCGGCGAGATTTTCGAGGACGATACCGTCGGAGGCGGCGAAG 25025989 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTG--GA 869810 || || |||| ||| ||| |||||||| ||| ||||| |||| |||||| || Sbjct 25025990 AAGGCGAGGATGTGAGAGATGAAGTGGCGTTCGCCGTCGGTGAGGTTGTTCCAGTGTTGA 25026049 Query 869811 CGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGT 869870 | |||| | || || || || ||||||||||||| ||||| ||||| ||||||| Sbjct 25026050 AG--ATCGGAGGAAAGATCGACTTCTTCGGCGGTCCAGAAAGAGGCTTCGGCTTTTTTGT 25026107 Query 869871 ACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACA-AAGCGGTTGGGGTT 869925 |||| ||||| | || |||| |||| ||||| | ||| || |||| ||||| Sbjct 25026108 ACATTTCCCAGATTTTTGGGTATTGGATTGGGAACA-TACAGAATCGGTCTGGGTT 25026162 >seq276 Length=24472 Score = 132 bits (146), Expect = 6e-25 Identities = 205/293 (70%), Gaps = 0/293 (0%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 || |||||||| || || || || ||||| || || ||||| | | || | | |||| Sbjct 22710 GAATGGATGTTTTCAATTGCAATTTGGAAACCATAGAAGGCACGTGCTTCGGAGATTTGG 22651 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || |||||||| | ||||| || || || || || ||||| ||||||||| Sbjct 22650 ACTTCTTTCATGAATCTTCCGGCAAGATTTTCAAGGACAATTCCGTCTGAGGCGGCGAAG 22591 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || || ||||| ||| |||||||| ||| |||| |||| |||||| | Sbjct 22590 AAGGCAAGAACGTGAGAGATGAAGTGGCGTTCGCCGTCTGTGAGGTTGTTCCAGTGCTTG 22531 Query 869813 GTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTAC 869872 |||| | || || || || ||||||||||||| ||||| ||||| ||||||||| Sbjct 22530 AGATCGGAGGAAAGATCAACTTCTTCGGCGGTCCAGAATGAGGCTTCGGCTTTTTTGTAC 22471 Query 869873 ATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTT 869925 || ||||| | || |||| |||| ||||| | | || |||| ||||| Sbjct 22470 ATTTCCCAGATTTTTGGGTATTGGATTGGGAACATGCAGAATCGGTCTGGGTT 22418 >seq7 Length=49172423 Score = 132 bits (146), Expect = 6e-25 Identities = 205/293 (70%), Gaps = 0/293 (0%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 || |||||||| || || || || ||||| || || ||||| | | || | | |||| Sbjct 10197378 GAATGGATGTTTTCAATTGCAATTTGGAAACCATAGAAGGCACGTGCTTCGGAGATTTGG 10197437 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || |||||||| | ||||| || || || || || ||||| ||||||||| Sbjct 10197438 ACTTCTTTCATGAATCTTCCGGCAAGATTTTCAAGGACAATTCCGTCTGAGGCGGCGAAG 10197497 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || || ||||| ||| |||||||| ||| |||| |||| |||||| | Sbjct 10197498 AAGGCAAGAACGTGAGAGATGAAGTGGCGTTCGCCGTCTGTGAGGTTGTTCCAGTGCTTG 10197557 Query 869813 GTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTAC 869872 |||| | || || || || ||||||||||||| ||||| ||||| ||||||||| Sbjct 10197558 AGATCGGAGGAAAGATCAACTTCTTCGGCGGTCCAGAATGAGGCTTCGGCTTTTTTGTAC 10197617 Query 869873 ATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTT 869925 || ||||| | || |||| |||| ||||| | | || |||| ||||| Sbjct 10197618 ATTTCCCAGATTTTTGGGTATTGGATTGGGAACATGCAGAATCGGTCTGGGTT 10197670 Score = 95.1 bits (104), Expect = 1e-13 Identities = 100/132 (76%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 1592165 ACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTT 1592224 || || ||||| | ||||| || || |||||| | || |||||| ||| || |||||| Sbjct 37466492 ACGCTTTTTGAACTCATCCTTGCTGCAAACTACTTGGATATCAAGAGTCTACTGGATCTT 37466433 Query 1592225 GGGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACC 1592284 ||| |||||| ||| ||||||| || || ||| |||||||||| || || ||| Sbjct 37466432 ACCTGCCAGTCTGCGGCGGACATGATGAAAGGGAAGACGCCCGAGGAAATGCGTGAGATG 37466373 Query 1592285 TTTAACATCAAG 1592296 |||||||||||| Sbjct 37466372 TTTAACATCAAG 37466361 >seq4 Length=56582383 Score = 96.9 bits (106), Expect = 4e-14 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 1592165 ACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTT 1592224 |||||||| || | ||| | || || ||||| || ||||||| |||||| |||||| Sbjct 11160774 ACCCTCTTCGATCTCATCTTGGCTGCAAACTATCTAAACATCAAAAGTCTGCTGGATCTT 11160833 Query 1592225 GGGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACC 1592284 |||||| |||| || ||||||||||||| | | |||| |||||||| || ||||| Sbjct 11160834 ACATGCAAGACTGTAGCAGACATGATCAAGGGTAGGACGCCGGAGGAGATTCGTAAGACT 11160893 Query 1592285 TTTAACAT 1592292 || ||||| Sbjct 11160894 TTCAACAT 11160901 >seq5 Length=43630510 Score = 91.5 bits (100), Expect = 2e-12 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 1592204 ATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCG 1592263 |||||| ||||| |||||| ||| || ||||||| ||||||||||||| ||| | Sbjct 8992524 ATCAAGAACCTGCTGGATCTTACATGCCAGACTGTGGCAGACATGATCAAGGGGAAGACA 8992583 Query 1592264 CCCGAGGAGATCCGCAAGACCTTTAACATCAAG 1592296 || |||||||| ||||||||||||||||| ||| Sbjct 8992584 CCTGAGGAGATTCGCAAGACCTTTAACATTAAG 8992616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106959724538279