Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq4 116 3e-21 seq979 109 5e-19 seq1 96.9 3e-15 seq8 87.8 1e-12 >seq4 Length=56582383 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| ||||| || || |||||||| || ||| |||| |||| | Sbjct 31288443 ATGCAAATCTTTGTGAAAACATTGACTGGCAAAACTATCACCCTCGAGGTGGAGAGTTCT 31288384 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | | || ||| |||||| ||||| ||||| | || ||||| Sbjct 31288383 GATACCATAGACAACGTTAAAGCTAAGATTCAAGACAAGGAAGGTATTCCTCCCGATCAG 31288324 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||||| ||||| | ||| |||||||| |||| |||| | | || | |||||||||||| Sbjct 31288323 CAAAGGCTTATATTTGCTGGTAAACAATTGGAAGATGGCCGCACCCTTGCGGATTACAAC 31288264 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || ||||| ||||| || | ||| | ||| | || || |||| || Sbjct 31288263 ATCCAAAAGGAATCCACCCTTCACCTTGTGCTGCGATTGAGAGGTGG 31288217 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| ||||| || || || |||||||| || | || ||| | | Sbjct 31306680 ATGCAGATCTTTGTGAAAACATTGACAGGAAAAACCATCACTCTTGAGGTAGAGAGTTCC 31306621 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | || || ||||| |||||||| || | || ||||| Sbjct 31306620 GATACAATTGATAATGTCAAGGCCAAGATCCAAGACAAAGAGGGTATCCCTCCTGATCAG 31306561 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || ||||| | ||| ||||||||||| ||||||| |||| | || ||||| ||| Sbjct 31306560 CAGAGGCTTATCTTTGCAGGTAAACAGCTCGAGGATGGAAGAATCCTAGCTGATTATAAC 31306501 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 || || || |||||||| | || ||||| | ||| || |||| |||| Sbjct 31306500 ATCCAGAAGGAATCTACCCTTCATTTGGTGCTTAGATTGAGAGGTGGAA 31306452 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 |||||| |||||||| || ||||| || || || || ||||| | || ||| | Sbjct 31306453 AATGCAGATATTTGTTAAGACTTTGACTGGAAAGACTATTACTTTGGAGGTTGAGAGTTC 31306394 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 |||||| | | | || ||| |||||| ||||| || || | || ||||| Sbjct 31306393 AGATACTATTGATAATGTGAAAGCTAAGATTCAAGACAAGGAGGGTATCCCTCCCGATCA 31306334 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 |||||| ||||| | || ||||| || |||| || | | ||| | | |||||||| Sbjct 31306333 ACAAAGGCTTATCTTCGCCGGTAAGCAATTGGAAGACGGGCGCACACTTGGCGATTACAA 31306274 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||||||||| || || || | || ||||| | ||| || |||| |||| Sbjct 31306273 CATTCAAAAGGAGTCCACCCTTCATTTGGTGCTTAGATTGAGAGGTGGAA 31306224 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/206 (70%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGA--GC-CT 110329 |||||||||||||| || || | || || || || |||||| | || ||| || || Sbjct 31259796 ATGCAAATATTTGTGAAGACACTTACTGGGAAGACTATTACCTTGGAGGTGGAAAGCTCT 31259737 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 || |||| | | | || ||| ||||| || || || || | ||| ||| Sbjct 31259736 GA---TACTATTGATAATGTGAAAGCAAAGATACAAGATAAGGAGGGTATTCCCCCAGAT 31259680 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || || ||||||| ||| || || ||| ||||||||| | || |||| |||||| Sbjct 31259679 CAGCAGAGGCTTATTTTTGCTGGCAAGCAGTTGGAGGATGGTCGTACTCTGGCAGATTAC 31259620 Query 110450 AACATTCAAAAAGAATCTACGTTGCA 110475 || ||||| ||||||||||| |||| Sbjct 31259619 AATATTCAGAAAGAATCTACCCTGCA 31259594 >seq979 Length=3763 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 29085 GGTCAGCTCATGGCTGCCAAGTTGGCCAATCCACACATCAAAATTCTACCGTCCATAGGC 29144 || ||| | ||||| || ||| | |||||| || |||| || || ||||| || ||| Sbjct 1386 GGCCAGATGATGGCCGCGAAGAAGCGCAATCCCGACCTCAAGATCCTGCCGTCGATCGGC 1327 Query 29145 GGCTGGACATTGTCCGACCCTTTTTATTTTATGCACGACGCGGAGAAACGGCGCGTGTTT 29204 |||||||| ||||||| || || | |||||||| ||| || || ||||| Sbjct 1326 GGCTGGACGCTGTCCGATCCGTTCTTCCAGCTGCACGACCCGGCCAAGCGCAAGGTGTTC 1267 Query 29205 GTGGACTCGGTCGAGGAATTTTTGCAGGTGTGGAAATTTTTTGACGGCGTAGACATTGAC 29264 || || ||| |||| | || ||| ||||| || || ||||| || ||||| ||| Sbjct 1266 GTCGATTCGACCGAGCAGTTGCTGCGCACCTGGAAGTTCTTCGACGGTGTCGACATCGAC 1207 Query 29265 TGGGAATTTCCGGGCGGTAAAGGCGCTAAC 29294 |||||||| |||||||| || ||||| ||| Sbjct 1206 TGGGAATTCCCGGGCGGCAAGGGCGCGAAC 1177 >seq1 Length=52991155 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||||||||| |||| || |||||||| ||| | ||| || || Sbjct 28610592 ATGCAAATCTTTGTCAAAACCCTAACAGGGAAAACCATAACCCTGGAAGTTGAATCTTCT 28610651 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | | || || ||||||| ||||| |||||| | || |||||| Sbjct 28610652 GACACAATCGACAACGTGAAGGCGAAGATTCAAGACAAGGAAGGCATTCCACCGGATCAG 28610711 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| || | || | ||| || || ||| |||| |||| ||||| | |||||||| || Sbjct 28610712 CAACGATTGATCTTTGCAGGGAAGCAGTTGGAAGATGGAAGAACTCTTGCGGATTATAAT 28610771 Query 110453 ATTCAAAAAGA 110463 || || ||||| Sbjct 28610772 ATCCAGAAAGA 28610782 >seq8 Length=45569985 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAG---CCT 110329 |||||||||||||| || ||| | || || || || |||||| | || |||| || Sbjct 35000594 ATGCAAATATTTGTGAAGACTCTCACAGGAAAGACAATTACCCTTGAGGTGGAGAGCTCT 35000535 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| || | | | | || || ||||| |||||||| || | || ||| Sbjct 35000534 GAC---ACCATTGACAATGTCAAGGCCAAGATACAAGACAAAGAGGGTATCCCACCAGAT 35000478 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || || || || | ||| || |||||||| || |||| |||||| |||| ||||| Sbjct 35000477 CAGCAGAGGCTCATCTTTGCTGGAAAACAGCTTGAAGATGGCAGAACCTTGGCTGATTAT 35000418 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||||||| ||||| || || | || | ||||| |||| || || || Sbjct 35000417 AACATTCAGAAAGAGTCAACTCTCCATCTTGTGTTGCGACTTCGTGGTGG 35000368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412830596094191