Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq1299 136 6e-26 seq8 132 8e-25 seq1 129 9e-24 seq276 122 1e-21 seq7 122 1e-21 >seq1299 Length=2149 Score = 136 bits (150), Expect = 6e-26 Identities = 242/348 (70%), Gaps = 9/348 (3%) Strand=Plus/Minus Query 2175045 GTGCGCACGGCATCGAGCGCCGTTGCCACGCTGCCGTCGGTGCCGTTTTTAAACCCGACC 2175104 ||||| || || |||| ||| | |||| |||||||||||||||| || || |||| | Sbjct 1176 GTGCGGACCGCGTCGATCGCGATCTTCACGTTGCCGTCGGTGCCGTTCTTGAAGCCGATC 1117 Query 2175105 G--GCAACGGCAGCGCCGACGCCATTTCGCGGTGCACCTGGCTCTCGGTGGTGCGCGCGC 2175162 | ||| || || | || || || | ||||| | ||| |||||| ||||| |||| Sbjct 1116 GGCGCATCG--AGGCCGGATGCGATCTGCCGGTGAATCTGCGACTCGGTCGTGCGTGCGC 1059 Query 2175163 CCACGGCGCCCCACGCCACGAGGTCTGCCAAATAGGGCGCCACCAAAGGGCTGAGAAACT 2175222 | | |||||||| | ||| || || | | ||||||||| | || |||||||| Sbjct 1058 CAATCGCGCCCCAGGACACCAGATCGTCGAGGTAGGGCGCCGTGAGCGGATCGAGAAACT 999 Query 2175223 CGACAGCCACGGGCTGGCCGACGTCGACGACCAGGTCGCGCAGCAGTCGACGCG-ATGTG 2175281 || || || ||| ||||| || ||| |||| ||||||| ||||||| | | Sbjct 998 CGGTCGCGACCGGCATGCCGAGTGCGTTGAC---GTCGAGCAGCAGGCGACGCGCAAGAC 942 Query 2175282 GCGAGGCCGGCGGCCAGGCGGCACGACCCGTCGAGGTCGGGGTCGCTGGCCAGGCCCTTC 2175341 || || ||| || | | ||| | |||||||| || ||| || || |||||| Sbjct 941 GC-AGCCCGTCGTCGACGCGATAGCTTCCGTCGAGCAGCGGATCGTTGATCAACCCCTTC 883 Query 2175342 CACCCGACGGTCGTGCGCGGCTTTTCGACATAGGCGCGCATGACCACC 2175389 || ||||| || |||||||||||||||| || | |||||| || ||| Sbjct 882 CAGCCGACCGTGGTGCGCGGCTTTTCGAAGTACGTGCGCATCACGACC 835 >seq8 Length=45569985 Score = 132 bits (146), Expect = 8e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 796161 TTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCGTCGCTGGCGGC 796220 ||| || || |||||||| | ||||| || || || ||||| |||||| |||||| Sbjct 25025926 TTGAACTTCTTTCATGAATCTTCCGGCGAGATTTTCGAGGACGATACCGTCGGAGGCGGC 25025985 Query 796221 GAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGCGAGACCCAGTG 796280 ||| |||||||||| ||| ||| ||||| || ||| ||||| |||| | |||||| Sbjct 25025986 GAAGAAGGCGAGGATGTGAGAGATGAAGTGGCGTTCGCCGTCGGTGAGGTTGTTCCAGTG 25026045 Query 796281 GACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTT 796340 |||| | || ||||| || ||||||||||| || ||||| ||||| ||||| Sbjct 25026046 TTGAAGATCGGAGGAAAGATCGACTTCTTCGGCGGTCCAGAAAGAGGCTTCGGCTTTTTT 25026105 Query 796341 GTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACA 796378 |||||| ||||| || | |||| |||| ||||||| Sbjct 25026106 GTACATTTCCCAGATTTTTGGGTATTGGATTGGGAACA 25026143 >seq1 Length=52991155 Score = 129 bits (142), Expect = 9e-24 Identities = 163/223 (73%), Gaps = 6/223 (3%) Strand=Plus/Minus Query 796159 ACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCGTCGCTGGCG 796218 ||||||| || ||||| || | ||||| || || ||| |||||||||||| ||| Sbjct 19457167 ACTTGGATTTCTTTCATAAATCTACCGGCGAGATTTTCAAGGACGATGCCGTCGGAGGCA 19457108 Query 796219 GCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGCGAGACCCAG 796278 ||||| ||||||||||| || ||| ||||| || ||| ||||| |||| |||| Sbjct 19457107 GCGAAGAAGGCGAGGACATGAGAGATGAAGTGGCGTTCGCCGTCGGTGAGGTTTTGCCAG 19457048 Query 796279 TGGACCGTG---TCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCC 796335 || | || |||| | || ||||| || || |||||||| || ||||| ||||| Sbjct 19457047 TG---CTTGAGATCGGAGGAAAGATCGACTTCTTCAGCGGTCCAGAATGAGGCTTCGGCT 19456991 Query 796336 TTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACA 796378 ||||||||||| ||||| || | |||| |||| ||||||| Sbjct 19456990 TTTTTGTACATTTCCCAGATTTTTGGGTATTGGATTGGGAACA 19456948 Score = 98.7 bits (108), Expect = 2e-14 Identities = 195/287 (68%), Gaps = 10/287 (3%) Strand=Plus/Minus Query 794380 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAG 794439 || ||||| | |||||||| || | ||| || || |||||||| || || ||||||||| Sbjct 19457461 CCCGGCATTAAACCGCGCTTTTTCAACCAGAAAATCGCACAGAAGCTTCCGGAGAAAAAG 19457402 Query 794440 ATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTG 794499 || || || || ||||| | |||| | || ||||||| || || ||| Sbjct 19457401 ATTCCTTCAACACAAGCAAACGCAACGATTCTTTCTGCAAAAGAATC---GC-----TTG 19457350 Query 794500 --TTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGG 794557 | |||||| ||||||||||| || || || ||| | | || | || || || | Sbjct 19457349 AATCGATCCATTTCATCGCCCAATCAGCTTTCTTCGCGATACATGGAATTGTTTCAATTG 19457290 Query 794558 CGCGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGT 794617 | |||| | | | | ||| || | | || | | || || |||| ||| || || | Sbjct 19457289 CATGAAATAAGCGATTCTTTTCAGCGGAATCGCTTATATACGTTTCGAGGAGAAGAGAAT 19457230 Query 794618 AGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAG 794664 | |||| |||||||||||||| || || |||||||| || || ||| Sbjct 19457229 ACATCTCAGAGTGGATGTTTTCAATTGCAATCTGGAAACCGTAGAAG 19457183 >seq276 Length=24472 Score = 122 bits (134), Expect = 1e-21 Identities = 167/232 (72%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 || |||| | |||||| || |||||||| | ||||| || || ||| || || ||| Sbjct 22665 GCTTCGGAGATTTGGACTTCTTTCATGAATCTTCCGGCAAGATTTTCAAGGACAATTCCG 22606 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 || ||||||||| ||||| || ||||| ||| ||||| || ||| |||| |||| Sbjct 22605 TCTGAGGCGGCGAAGAAGGCAAGAACGTGAGAGATGAAGTGGCGTTCGCCGTCTGTGAGG 22546 Query 796270 GAGACCCAGTGGACCGTG---TCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAG 796326 | |||||| | || |||| | || || || || ||||||||||| || ||| Sbjct 22545 TTGTTCCAGTG---CTTGAGATCGGAGGAAAGATCAACTTCTTCGGCGGTCCAGAATGAG 22489 Query 796327 GCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACA 796378 || ||||| ||||||||||| ||||| || | |||| |||| ||||||| Sbjct 22488 GCTTCGGCTTTTTTGTACATTTCCCAGATTTTTGGGTATTGGATTGGGAACA 22437 >seq7 Length=49172423 Score = 122 bits (134), Expect = 1e-21 Identities = 167/232 (72%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 || |||| | |||||| || |||||||| | ||||| || || ||| || || ||| Sbjct 10197423 GCTTCGGAGATTTGGACTTCTTTCATGAATCTTCCGGCAAGATTTTCAAGGACAATTCCG 10197482 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 || ||||||||| ||||| || ||||| ||| ||||| || ||| |||| |||| Sbjct 10197483 TCTGAGGCGGCGAAGAAGGCAAGAACGTGAGAGATGAAGTGGCGTTCGCCGTCTGTGAGG 10197542 Query 796270 GAGACCCAGTGGACCGTG---TCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAG 796326 | |||||| | || |||| | || || || || ||||||||||| || ||| Sbjct 10197543 TTGTTCCAGTG---CTTGAGATCGGAGGAAAGATCAACTTCTTCGGCGGTCCAGAATGAG 10197599 Query 796327 GCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACA 796378 || ||||| ||||||||||| ||||| || | |||| |||| ||||||| Sbjct 10197600 GCTTCGGCTTTTTTGTACATTTCCCAGATTTTTGGGTATTGGATTGGGAACA 10197651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916013758835093