Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq979 129 5e-25 seq4 96.9 3e-15 seq1 86.0 5e-12 seq8 82.4 6e-11 >seq979 Length=3763 Score = 129 bits (142), Expect = 5e-25 Identities = 159/213 (75%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 29349 GGTCAGCTAATGGCGGCCAAGCTGGCCAATCCGCACCTCAAAATTCTGCCGTCCATCGGC 29408 || ||| | ||||| || ||| | |||||| ||||||| || |||||||| |||||| Sbjct 1386 GGCCAGATGATGGCCGCGAAGAAGCGCAATCCCGACCTCAAGATCCTGCCGTCGATCGGC 1327 Query 29409 GGCTGGACATTGTCCGACCCGTTCTATTTCA--TGCACGACGCGGAAAAACGGCGTGTGT 29466 |||||||| ||||||| |||||| || || |||||||| ||| || || |||| Sbjct 1326 GGCTGGACGCTGTCCGATCCGTTC--TTCCAGCTGCACGACCCGGCCAAGCGCAAGGTGT 1269 Query 29467 TTGTGGACTCGGTCAGAG-AATTTCTGCAGGTGTGGAAGTTTTTTGACGGCGTGGACATA 29525 | || || || | | ||| | || |||| |||||||| || ||||| || ||||| Sbjct 1268 TCGTCGATTC-GACCGAGCAGTTGCTGCGCACCTGGAAGTTCTTCGACGGTGTCGACATC 1210 Query 29526 GACTGGGAGTTTCCGGGTGGCAAAGGCGCCAAC 29558 |||||||| || ||||| ||||| ||||| ||| Sbjct 1209 GACTGGGAATTCCCGGGCGGCAAGGGCGCGAAC 1177 >seq4 Length=56582383 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 ||||||||||||||| || |||||||| || ||||| ||||| | || ||| | Sbjct 31260253 AATGCAAATTTTTGTTAAGACTTTAACTGGAAAAACTATTACTTTGGAGGTTGAGAGTTC 31260194 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 |||||| | | | || ||| |||||| ||||| || || | || ||||| Sbjct 31260193 AGATACTATTGATAATGTGAAAGCTAAGATTCAAGATAAGGAGGGTATCCCTCCTGATCA 31260134 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||||| ||||| | ||| ||||| ||||| || || | | ||| | || || || || Sbjct 31260133 ACAGAGGCTTATCTTTGCTGGTAAGCAGCTTGAAGATGGAAGGACACTTGCCGATTATAA 31260074 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||| || |||||||| || | || |||| ||||| | || ||||| Sbjct 31260073 CATCCAGAAGGAGTCCACTCTCCATTTGGTTTTGAGGCTTCGTGGGGG 31260026 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||| ||||| || ||||| |||||||| || | || ||| | | Sbjct 31306680 ATGCAGATCTTTGTGAAAACATTGACAGGAAAAACCATCACTCTTGAGGTAGAGAGTTCC 31306621 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | || || ||||| || ||||| || | || |||||| Sbjct 31306620 GATACAATTGATAATGTCAAGGCCAAGATCCAAGACAAAGAGGGTATCCCTCCTGATCAG 31306561 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| ||||| | ||| ||||||||||| ||||| | | || | || || || ||| Sbjct 31306560 CAGAGGCTTATCTTTGCAGGTAAACAGCTCGAGGATGGAAGAATCCTAGCTGATTATAAC 31306501 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 || || ||||| ||||| | || ||||| | |||||| |||| |||| Sbjct 31306500 ATCCAGAAGGAATCTACCCTTCATTTGGTGCTTAGATTGAGAGGTGGAA 31306452 Score = 89.7 bits (98), Expect = 4e-13 Identities = 163/238 (68%), Gaps = 3/238 (1%) Strand=Plus/Minus Query 107550 TTTAAA---ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACG 107606 |||||| |||||||| || || ||||| || || || |||||||| ||| | || | Sbjct 31260717 TTTAAACAGATGCAAATCTTCGTGAAAACATTGACTGGTAAAACCATCACCCTTGAGGTG 31260658 Query 107607 GAGGCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCC 107666 || | ||||| | | | || || |||||| || ||||| || | || Sbjct 31260657 GAATCATCAGATACAATTGATAATGTCAAGGCCAAGATTCAAGACAAAGAGGGAATCCCT 31260598 Query 107667 GTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCG 107726 ||||||||||| ||||| | ||| || ||||| || ||||| | | ||| | || Sbjct 31260597 CCTGATCAGCAGAGGCTTATCTTTGCTGGGAAACAACTCGAGGATGGAAGAACCCTAGCT 31260538 Query 107727 GACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 || || ||||| || ||||| ||||| | || ||||| | |||||| |||| |||| Sbjct 31260537 GATTATAACATCCAGAAGGAATCTACCCTTCATTTGGTGCTTAGATTGAGAGGTGGAA 31260480 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 107543 TAAGAGGTTTAAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGA 107602 |||||||| || |||| |||||||| || ||||| || || || || ||||| | || Sbjct 31287998 TAAGAGGTGGAA--TGCAGATTTTTGTAAAGACTTTGACTGGAAAGACTATTACTTTGGA 31287941 Query 107603 AACGGAGGCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGT 107662 |||| | |||||| | | | || ||| |||||| ||||| || || | Sbjct 31287940 GGTGGAGAGTTCAGATACTATTGATAATGTGAAAGCTAAGATTCAAGATAAGGAGGGTAT 31287881 Query 107663 GCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAAT 107722 || ||||||||||| ||||| | || ||||| || |||| |||| || | Sbjct 31287880 CCCTCCAGATCAGCAGAGGCTTATCTTCGCCGGTAAGCAATTGGAAGACGGGCGCACGCT 31287821 Query 107723 GGCGGACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 || || |||||||||||||||||||| || | || |||| ||| Sbjct 31287820 CGCTGATTACAACATTCAAAAGGAGTCCACCCTTCATTTGGTTTTG 31287775 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| ||||| || ||| | || || || || || ||| | || |||| ||| Sbjct 36294099 ATGCAAATATTTGTGAAGACTCTCACTGGAAAGACAATCACCCTTGAGGTGGAGAGCTCT 36294158 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | | || || ||||| || |||||||| | || || || Sbjct 36294159 -GATACCATTGACAATGTTAAGGCCAAGATACAGGACAAAGAAGGTATTCCACCAGACCA 36294217 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | ||| || |||||||| || || | || ||| |||| |||||||| Sbjct 36294218 GCAGAGGCTCATCTTTGCTGGAAAACAGCTTGAAGATGGCAGAACCTTGGCTGACTACAA 36294277 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||| || |||||||| || | || | |||||| || | || || || Sbjct 36294278 CATCCAGAAGGAGTCAACTCTCCATCTTGTGTTGCGACTTCGCGGTGG 36294325 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||||||||| || || | || || ||||| ||||| | || ||| | Sbjct 31287531 ATGCAAATTTTTGTAAAGACCCTTACCGGAAAAACTATTACTTTGGAGGTTGAGAGTTCA 31287472 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 |||||| | | | || ||| |||||| ||||| || || | || |||||| Sbjct 31287471 GATACTATTGATAATGTGAAAGCTAAGATTCAAGATAAGGAGGGTATCCCTCCCGATCAG 31287412 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| ||||| | ||| ||||| ||||| || || | | || | || || || ||| Sbjct 31287411 CAGAGGCTTATCTTTGCTGGTAAGCAGCTTGAAGATGGAAGGACCCTTGCTGATTATAAC 31287352 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAG 107770 ||||||||||| || || | || |||| ||||| Sbjct 31287351 ATTCAAAAGGAATCGACCCTCCATTTGGTTTTGAG 31287317 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||||||||| || || | || || ||||| ||||| | || ||| | Sbjct 31287759 ATGCAAATTTTTGTAAAGACCCTTACCGGAAAAACTATTACTTTGGAGGTTGAGAGTTCA 31287700 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 |||||| | | | || ||| |||||| ||||| |||||| | || |||||| Sbjct 31287699 GATACTATTGATAATGTGAAAGCTAAGATTCAGGATAAGGAAGGCATCCCTCCTGATCAG 31287640 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||||||||| | ||| || ||||| || || || | | || | || || || || Sbjct 31287639 CAGAGACTTATCTTTGCAGGGAAACAACTTGAAGATGGAAGGACCCTTGCTGATTATAAT 31287580 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 || |||||||| || || |||| |||| ||| Sbjct 31287579 ATCCAAAAGGAATCCACTCTGCATTTGGTTTTG 31287547 Score = 82.4 bits (90), Expect = 6e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| |||||||| || || | ||||| || || ||||| | || ||| ||| Sbjct 36294327 ATGCAGATTTTTGTAAAGACCCTTACAGGAAAGACAATTACTTTGGAGGTAGAGAGCTCA 36294386 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | | ||||| ||||||| || ||||| || | ||| ||||| Sbjct 36294387 -GATACGATTGACAATGTAAAGGCAAAGATTCAGGACAAAGAGGGTATTCCCCCAGATCA 36294445 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || |||| ||| || || ||||| || || | || ||| | || || ||||| Sbjct 36294446 GCAGAGGCTCATTTTTGCTGGAAAGCAGCTTGAAGATGGCAGAACTCTTGCTGATTACAA 36294505 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 ||| || || ||||| || | ||| | || ||| Sbjct 36294506 CATCCAGAAAGAGTCAACTCTTCACCTTGTCTTG 36294539 >seq1 Length=52991155 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| ||||||||||| ||||||| |||||||| ||| | ||| || || Sbjct 28610592 ATGCAAATCTTTGTCAAAACCCTAACAGGGAAAACCATAACCCTGGAAGTTGAATCTTCT 28610651 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || |||||| || || |||||| | || ||||||| Sbjct 28610652 GACACAATCGACAACGTGAAGGCGAAGATTCAAGACAAGGAAGGCATTCCACCGGATCAG 28610711 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || || | || | ||| || || ||| |||| || | | ||| | ||||| || || Sbjct 28610712 CAACGATTGATCTTTGCAGGGAAGCAGTTGGAAGATGGAAGAACTCTTGCGGATTATAAT 28610771 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 || || || ||| |||| | || | || |||| ||||| || || Sbjct 28610772 ATCCAGAAAGAGAGTACGCTTCATCTAGTTCTGAGGTTGCGCGGTGG 28610818 >seq8 Length=45569985 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||||||||| || || || | || ||||| ||||| || ||||| ||| | Sbjct 35000822 ATGCAAATTTTCGTTAAGACCCTCACTGGCAAGACCATCACTCTCGAAGTTGAGAGTTCA 35000763 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | | || || |||||| || || ||||| | || |||||| Sbjct 35000762 GATACCATAGACAATGTTAAGGCCAAGATTCAAGACAAGGAAGGGATCCCACCTGATCAG 35000703 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || |||| ||| || ||||| |||||||| | || | ||||| || ||| Sbjct 35000702 CAGCGTCTCATTTTTGCTGGCAAACAACTGGAGGATGGGCGTACCCTTGCGGATTATAAC 35000643 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || |||||||||||||| | || ||||| Sbjct 35000642 ATCCAAAAGGAGTCTACCCTTCATTTGGTG 35000613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398866168312843