Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq4 125 1e-23 seq8 100 4e-16 seq7 100 4e-16 seq1 86.0 1e-11 >seq4 Length=56582383 Score = 125 bits (138), Expect = 1e-23 Identities = 156/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || |||| || | || |||||||| |||||| | || || || | | Sbjct 31287758 TGCAAATTTTTGTAAAGACCCTTACCGGAAAAACTATTACTTTGGAGGTTGAGAGTTCAG 31287699 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| | ||||| ||| ||| || || ||| |||||||| || || ||||| | Sbjct 31287698 ATACTATTGATAATGTGAAAGCTAAGATTCAGGATAAGGAAGGCATCCCTCCTGATCAGC 31287639 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | ||||| || |||||||| |||||| | || ||| || || | | |||||||||| Sbjct 31287638 AGAGACTTATCTTTGCAGGGAAACAACTTGAAGATGGAAGGACCCTTGCTGATTATAATA 31287579 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACG 146245 | ||||| ||||| ||| | ||||| || || || Sbjct 31287578 TCCAAAAGGAATCCACTCTGCATTTGGTTTTGCG 31287545 Score = 114 bits (126), Expect = 2e-20 Identities = 161/226 (71%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | |||||||| ||||||||||| || ||| |||| ||||| | || Sbjct 31306679 TGCAGATCTTTGTGAAAACATTGACAGGAAAAACCATCACTCTTGAGGTAGAGAGTTCCG 31306620 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | ||||| || || || ||| ||||| || || || || ||||| | Sbjct 31306619 ATACAATTGATAATGTCAAGGCCAAGATCCAAGACAAAGAGGGTATCCCTCCTGATCAGC 31306560 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || || || |||||||||||||| | || ||| |||| || | |||||||| | Sbjct 31306559 AGAGGCTTATCTTTGCAGGTAAACAGCTCGAGGATGGAAGAATCCTAGCTGATTATAACA 31306500 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | || || ||||| || | ||||| || | |||| ||||| || Sbjct 31306499 TCCAGAAGGAATCTACCCTTCATTTGGTGCTTAGATTGAGAGGTGG 31306454 Score = 105 bits (116), Expect = 1e-17 Identities = 161/227 (71%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 |||| ||||| | || ||||| || ||||||||||| || |||| || ||| ||| Sbjct 31288214 TGCAGATATTTGTGAAGACATTGACCGGAAAAACAATCACCCTTGAGGTTGAATCAT-CT 31288156 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||| ||| | ||||| || || || ||| ||||| || || || || ||||| Sbjct 31288155 GATACAATTGATAATGTCAAGGCCAAGATCCAAGACAAAGAGGGTATCCCTCCTGATCAG 31288096 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || || || || |||||||| ||||| | || ||| ||||| || | |||||||| Sbjct 31288095 CAGAGGCTTATCTTTGCAGGGAAACAGCTCGAGGATGGAAGAACCCTAGCTGATTATAAC 31288036 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 || || || ||||| || | ||| | || | |||||||||| || Sbjct 31288035 ATCCAGAAGGAATCTACCCTTCATCTGGTGCTTAGATTAAGAGGTGG 31287989 Score = 96.9 bits (106), Expect = 5e-15 Identities = 157/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | |||||||| || || ||||| || || | || || || | | Sbjct 31288442 TGCAAATCTTTGTGAAAACATTGACTGGCAAAACTATCACCCTCGAGGTGGAGAGTTCTG 31288383 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || | || || ||| ||| || ||| || ||||| ||||| |||||||| | Sbjct 31288382 ATACCATAGACAACGTTAAAGCTAAGATTCAAGACAAGGAAGGTATTCCTCCCGATCAGC 31288323 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 |||| || || ||||| ||||||||||| || ||| | || | | ||||| || | Sbjct 31288322 AAAGGCTTATATTTGCTGGTAAACAATTGGAAGATGGCCGCACCCTTGCGGATTACAACA 31288263 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | ||||| ||||| || | || | || | ||||| ||||| || Sbjct 31288262 TCCAAAAGGAATCCACCCTTCACCTTGTGCTGCGATTGAGAGGTGG 31288217 Score = 93.3 bits (102), Expect = 7e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | || || | || ||||| || || ||| | || || || | | Sbjct 31260023 TGCAGATTTTTGTTAAGACCCTTACTGGAAAGACCATAACTTTGGAGGTTGAGAGTTCTG 31259964 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | ||||| || ||||| || |||||| |||||||| || || || | Sbjct 31259963 ATACAATTGATAATGTGAAGGCAAAAATTCAGGATAAAGAGGGCATTCCTCCTGACCAGC 31259904 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | ||||| |||||||| || || || || || ||| | | || || | |||||||||| Sbjct 31259903 AGAGACTAATTTTTGCTGGAAAGCAGTTGGAGGATGGTCGTACTTTGGCCGATTATAATA 31259844 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATT 146242 | || || ||||| ||| | ||||| || || Sbjct 31259843 TCCAGAAGGAATCTACTTTGCATTTGGTTTT 31259813 Score = 91.5 bits (100), Expect = 2e-13 Identities = 163/238 (68%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| ||||| | || || || || ||||| || |||||| | || || || | | Sbjct 31306451 TGCAGATATTTGTTAAGACTTTGACTGGAAAGACTATTACTTTGGAGGTTGAGAGTTCAG 31306392 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| | ||||| ||| ||| || ||| || || || || || |||||||||| Sbjct 31306391 ATACTATTGATAATGTGAAAGCTAAGATTCAAGACAAGGAGGGTATCCCTCCCGATCAAC 31306332 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 |||| || || || || ||||| ||||| || || | || | ||||| || | Sbjct 31306331 AAAGGCTTATCTTCGCCGGTAAGCAATTGGAAGACGGGCGCACACTTGGCGATTACAACA 31306272 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAATATT 146269 | ||||| || || || | ||||| || | |||| ||||| || | ||||||| Sbjct 31306271 TTCAAAAGGAGTCCACCCTTCATTTGGTGCTTAGATTGAGAGGTGGAATGCAAATATT 31306214 Score = 89.7 bits (98), Expect = 8e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGA-ACATAAC 146090 |||| || || |||| || | |||||||| ||||||||| | || ||||| | | | Sbjct 36294328 TGCAGATTTTTGTAAAGACCCTTACAGGAAAGACAATTACTTTGGAGGTAGAGAGCTCA- 36294386 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||| ||| | |||||||| || || || ||||| || ||||| || ||||| Sbjct 36294387 GATACGATTGACAATGTAAAGGCAAAGATTCAGGACAAAGAGGGTATTCCCCCAGATCAG 36294446 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || || ||||||||||| || || || | || ||| ||||| | | ||||| || Sbjct 36294447 CAGAGGCTCATTTTTGCTGGAAAGCAGCTTGAAGATGGCAGAACTCTTGCTGATTACAAC 36294506 Query 146211 ATACAAAAAGAATCGACT 146228 || || ||||| || ||| Sbjct 36294507 ATCCAGAAAGAGTCAACT 36294524 Score = 86.0 bits (94), Expect = 1e-11 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || |||| || | |||||||| ||||||||| | || ||||| | Sbjct 35110912 TGCAGATTTTTGTAAAGACCCTTACAGGAAAGACAATTACTTTGGAGGTAGAGAGCTCGG 35110853 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| | |||||||| ||| || || || || |||||||| || || || | Sbjct 35110852 ACACGATTGACAATGTAAAGGCTAAGATTCAGGACAAGGAGGGCATTCCCCCAGACCAGC 35110793 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || ||||||||||| || ||||| | || ||| ||||| | | ||||| || | Sbjct 35110792 AGAGGCTCATTTTTGCTGGAAAACAGCTTGAAGATGGCAGAACTCTTGCTGATTACAACA 35110733 Query 146212 TACAAAAAGAATCGACT 146228 | || ||||| || ||| Sbjct 35110732 TCCAGAAAGAGTCAACT 35110716 >seq8 Length=45569985 Score = 100 bits (110), Expect = 4e-16 Identities = 160/227 (70%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGA-ACATAAC 146090 |||| || || | || || |||| |||||||| |||||| | || || || | | | Sbjct 6168398 TGCAGATTTTTGTTAAGACCCTAACTGGAAAAACGATTACTTTGGAGGTGGAGAGCTCA- 6168456 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || || ||| | |||||||| ||| || || || ||||||||||| || || || Sbjct 6168457 GACACAATTGACAATGTAAAGGCTAAGATTCAGGACAAGGAAGGCATTCCCCCAGACCAG 6168516 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 ||||| | |||||||| || || || | || ||| ||||| || |||||||||| Sbjct 6168517 CAAAGGTTGATTTTTGCTGGAAAGCAGCTTGAAGATGGCAGAACCTTGGCAGATTATAAC 6168576 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 || || |||||||| ||| | ||| | || | || || || ||||| Sbjct 6168577 ATCCAGAAAGAATCCACTCTTCATCTTGTCCTTCGTTTGAGGGGAGG 6168623 >seq7 Length=49172423 Score = 100 bits (110), Expect = 4e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || || | |||||||||||||| ||| |||| || || || Sbjct 47989851 TGCAAATCTTTGTGAAGACTCTCACAGGAAAAACAATCACTCTTGAGGTGGAGAGCTCCG 47989910 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | ||||| || || || ||| || ||||| || ||||| || || | Sbjct 47989911 ATACAATTGACAATGTCAAGGCCAAGATTCAAGACAAGGAAGGGATCCCACCTGACCAGC 47989970 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || ||||| ||||| || ||||| | || ||| ||||| || | |||||||| | Sbjct 47989971 AGAGGCTCATCTTTGCTGGAAAACAGCTTGAAGATGGCAGAACATTGGCCGATTATAACA 47990030 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | || ||||| || ||| | ||| | || || ||| | | || |||| Sbjct 47990031 TCCAGAAAGAGTCAACTCTTCATCTCGTTTTGCGACTTCGTGGTGGTA 47990078 >seq1 Length=52991155 Score = 86.0 bits (94), Expect = 1e-11 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | ||||| ||||||| ||||| || || | || || ||| | | Sbjct 28610593 TGCAAATCTTTGTCAAAACCCTAACAGGGAAAACCATAACCCTGGAAGTTGAATCTTCTG 28610652 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || | || || || || || ||| || |||||||||||||| ||||| | Sbjct 28610653 ACACAATCGACAACGTGAAGGCGAAGATTCAAGACAAGGAAGGCATTCCACCGGATCAGC 28610712 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || || | || |||||||| || || || || ||| ||||| | | |||||||||| Sbjct 28610713 AACGATTGATCTTTGCAGGGAAGCAGTTGGAAGATGGAAGAACTCTTGCGGATTATAATA 28610772 Query 146212 TACAAAAAGA 146221 | || ||||| Sbjct 28610773 TCCAGAAAGA 28610782 Score = 84.2 bits (92), Expect = 3e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| ||||| | || || || || || || ||||||||| | || || || | | Sbjct 28610821 TGCAGATATTTGTGAAGACGTTGACCGGGAAGACAATTACTCTAGAGGTGGAGAGTTCTG 28610880 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| | || || || || || || ||| || ||||||||||| ||||| | Sbjct 28610881 ATACTATTGATAACGTGAAGGCCAAGATTCAGGATAAGGAGGGCATTCCACCGGATCAGC 28610940 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || | || ||||| || |||||| | || ||| || || | | |||||||||| Sbjct 28610941 AGCGATTGATCTTTGCTGGAAAACAACTTGAGGATGGGAGGACTCTCGCTGATTATAATA 28611000 Query 146212 TACAAAAAGAATCGAC 146227 | || ||||| || || Sbjct 28611001 TTCAGAAAGAGTCTAC 28611016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786144908176040