Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_023575.1 Length=45550 Score E Sequences producing significant alignments: (Bits) Value seq1013 91.5 4e-14 >seq1013 Length=3469 Score = 91.5 bits (100), Expect = 4e-14 Identities = 221/331 (67%), Gaps = 13/331 (4%) Strand=Plus/Plus Query 30056 CCGCCAAACATCTGCATCTGCCCGTGCATGTCGACGATGATCTCTGTTGTGTAGCGGTCC 30115 ||||| | ||||||||| || ||| ||| ||||| || | |||||| ||| Sbjct 5 CCGCCGAGCATCTGCATTTG---------GTCAGCGACAATCTCGGTCGAGTAGCGATCC 55 Query 30116 TGACCGTCCTGCGCCTGCCACTTTCGAGTTCTGAGTGAACCCTCGACGTACAGTTGCTGA 30175 || ||||| ||| ||||||| || || || | || || |||| ||| | | || Sbjct 56 TGGCCGTCTTGCCCCTGCCATTTCCGCGTGCGGATGCGGCCTTCGATGTAGACG-GAAGA 114 Query 30176 -CCCTTCTTTACGTGCTGCCCGACGATCTCCGCCAACTTCCCGAAGAACACCACGCGGTG 30234 ||||| || | | ||| | |||||||||||| | || ||||| | || || || Sbjct 115 TCCCTTTTTCAGATACTGGCTGACGATCTCCGCAAGGCGGCCAAAGAAGGCGACACGATG 174 Query 30235 CCATTCGGTGCGCTCCTGTTGCTGGCCGGTCTGC-TTGTCCTTCCAGCTCTCGCTGGTGG 30293 ||| |||||| ||| | | ||| | ||| |||||||| ||| ||| | || | Sbjct 175 CCACTCGGTGATCTCTTTGAAGTCGCCTG-ATGCTTTGTCCTTGTAGCGATCGGTCGTCG 233 Query 30294 CGAGGGTGATGTTGGTCACCGCATTGCCGTTGGGCATATAGCGAGTTTCCGGGTCACCAC 30353 |||| ||||| | ||||| | |||| | |||| || || |||||| || | | Sbjct 234 CGAGACGAATGTTCGCGACCGCGTCGCCGCTCGGCAGATGTCGCACTTCCGGATCTGCGC 293 Query 30354 CGACGTTGCCAACCAGAATGACTTTGTTAAC 30384 ||| ||||| || || || |||||||| || Sbjct 294 CGAGATTGCCGACGAGGATCACTTTGTTCAC 324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145634617679728