Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq4 105 7e-18 seq1 96.9 3e-15 seq5 91.5 1e-13 seq6 86.0 6e-12 seq8 84.2 2e-11 >seq4 Length=56582383 Score = 105 bits (116), Expect = 7e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 137203 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCTCATTGTGCTCGAGTCTTC 137261 || ||||||| |||||||| || || ||||| ||||| ||| | || || || || Sbjct 31260500 ACCAAATGAAGGGTAGATTCCTTCTGGATGTTATAATCAGCT-AGGGTTCTTCCATCCTC 31260558 Query 137262 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 137321 ||||||||| |||||| |||| || | |||||||| ||||| || || |||||||| Sbjct 31260559 GAGTTGTTTCCCAGCAAAGATAAGCCTCTGCTGATCAGGAGGGATTCCCTCTTTGTCTTG 31260618 Query 137322 AATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTT 137381 ||| || || | | || | || |||| | ||| || |||| || | || || Sbjct 31260619 AATCTTGGCCTTGACATTATCAATTGTATCTGATGATTCCACCTCAAGGGTGATGGTTTT 31260678 Query 137382 GCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || ||||||||||| ||||| |||||||| Sbjct 31260679 ACCAGTCAATGTTTTCACGAAGATTTGCAT 31260708 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 137203 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 137262 || ||||||| || || || ||||| ||||||||||||| | ||||| | |||||| Sbjct 31306244 ACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATCGCCAAGTGTGCGCCCGTCTTCC 31306303 Query 137263 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 137322 | ||| ||||| || |||| || | ||| ||||||||||| || || || ||||| | Sbjct 31306304 AATTGCTTACCGGCGAAGATAAGCCTTTGTTGATCGGGAGGGATACCCTCCTTGTCTTGA 31306363 Query 137323 ATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTG 137382 || || ||| | | || | || |||| || || || | ||| | ||||| Sbjct 31306364 ATCTTAGCTTTCACATTATCAATAGTATCTGAACTCTCAACCTCCAAAGTAATAGTCTTT 31306423 Query 137383 CCGGTCAATGTTTTTACGAATATTTGCAT 137411 || ||||| || || || ||||| ||||| Sbjct 31306424 CCAGTCAAAGTCTTAACAAATATCTGCAT 31306452 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| |||| || |||| || | |||| || ||||| ||||| ||||||||||| Sbjct 31288216 GCCACCTCTCAATCGCAGCACAAGGTGAAGGGTGGATTCCTTTTGGATGTTGTAATCCGC 31288275 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | |||| ||||| | ||||||||||||| | || || | ||||||||||||||| Sbjct 31288276 AAGGGTGCGGCCATCTTCCAATTGTTTACCAGCAAATATAAGCCTTTGCTGATCGGGAGG 31288335 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || ||||| ||||| ||| || ||| | | || | || || | || || Sbjct 31288336 AATACCTTCCTTGTCTTGAATCTTAGCTTTAACGTTGTCTATGGTATCAGAACTCTCCAC 31288395 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | || | || ||||| ||||||||||| || || |||||||| Sbjct 31288396 CTCGAGGGTGATAGTTTTGCCAGTCAATGTTTTCACAAAGATTTGCAT 31288443 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 137203 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCTCATTGTGCTCGAGTCTTC 137261 || ||||||| |||||||| || || ||||| ||||| ||| | || || ||||| Sbjct 31260272 ACCAAATGAAGGGTAGATTCCTTCTGGATGTTATAATCAGCT-AGGGTCCTTCCATCTTC 31260330 Query 137262 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 137321 |||||||| || ||| |||| || | |||||||| ||||| || || |||||||| Sbjct 31260331 TAGTTGTTTCCCTGCAAAGATAAGCCTCTGCTGATCAGGAGGGATACCCTCTTTGTCCTG 31260390 Query 137322 AATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTT 137381 || || || | | || | || || | || ||| || || | || | || || Sbjct 31260391 TATCTTGGCCTTGACATTATCAATGGTATCCGAGGATTCAACCTCTAAGGTGATGGTTTT 31260450 Query 137382 GCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || ||||| || ||||||||||| ||||| Sbjct 31260451 TCCAGTCAAAGTCTTTACGAATATCTGCAT 31260480 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 137197 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 137256 |||||||| ||||||| || || || ||||| ||||||||||| | |||| | | Sbjct 31287773 CGCAAAACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATCAGCGAGCGTGCGCCCG 31287832 Query 137257 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 137316 ||||| | ||| ||||| || |||| || | |||||||| ||||| || || || || Sbjct 31287833 TCTTCCAATTGCTTACCGGCGAAGATAAGCCTCTGCTGATCTGGAGGGATACCCTCCTTA 31287892 Query 137317 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACC 137376 || ||| || ||| | | || | || |||| || || || | ||| | Sbjct 31287893 TCTTGAATCTTAGCTTTCACATTATCAATAGTATCTGAACTCTCCACCTCCAAAGTAATA 31287952 Query 137377 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 ||||| || ||||| || ||||| || || ||||| Sbjct 31287953 GTCTTTCCAGTCAAAGTCTTTACAAAAATCTGCAT 31287987 Score = 82.4 bits (90), Expect = 7e-11 Identities = 151/218 (69%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 137197 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 137256 |||||||| | ||||| || || ||||| || ||||| |||||| || ||| || Sbjct 35110927 CGCAAAACGAGATGAAGAGTTGACTCTTTCTGGATGTTATAATCGGCCAATGTTCTGCCA 35110986 Query 137257 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 137316 ||||| || ||||| |||||| |||| || | ||||| || || || || || |||||| Sbjct 35110987 TCTTCAAGCTGTTTTCCAGCAAAGATGAGCCTCTGCTGGTCTGGTGGGATACCCTCTTTG 35111046 Query 137317 TCG-GTAATTTTTTGTTTTAGCTGT-TCCACCGTGTCTGTGGGTTCTACTTCAACAGTCA 137374 || ||| | || | ||| | | || | || || | | || || |||| || | Sbjct 35111047 TCTTGTA--TCTTGGCCTTAACATTGTCAATGGTATCAGAGCTCTCCACCTCAAGGGTGA 35111104 Query 137375 CCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 ||||| || || | || || || |||||||||||| Sbjct 35111105 TTGTCTTTCCAGTGAGAGTCTTCACAAATATTTGCATA 35111142 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | |||||| || | |||| || || ||||| || ||||||||||| Sbjct 36294553 CCACCACGAAGACGCAAGACAAGGTGAAGAGTTGACTCTTTCTGGATGTTGTAATCAGCA 36294494 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || || ||||| || || || |||||| | || || | |||||||| || || Sbjct 36294493 AGAGTTCTGCCATCTTCAAGCTGCTTTCCAGCAAAAATGAGCCTCTGCTGATCTGGGGGA 36294434 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || || |||||||| ||| ||| |||| | || | ||| |||| | ||||| Sbjct 36294433 ATACCCTCTTTGTCCTGAATCTTTGCCTTTACATTGTCAATCGTATCTGAGCTCTCTACC 36294374 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || | ||| | ||||| || || | || ||||| || || |||||| Sbjct 36294373 TCCAAAGTAATTGTCTTTCCTGTAAGGGTCTTTACAAAAATCTGCATA 36294326 >seq1 Length=52991155 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| || || | ||| | ||| | |||| || || ||||| || || |||||||| Sbjct 28610591 GCCACCACGGAGACGGAGAACAAGGTGAAGCGTGGACTCTTTCTGGATATTGTAATCCGC 28610532 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | || || |||||| || ||||| || || |||| |||||||| || || || || Sbjct 28610531 AAGAGTTCTACCGTCTTCTAGCTGTTTTCCGGCGAAGATGAGACGTTGTTGGTCAGGTGG 28610472 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || ||||||||||| ||||| ||| | | || | ||||| | | |||||| Sbjct 28610471 AATTCCTTCTTTGTCTTGGATTTTGGCTTTGACGTTGTCGATTGTGTCGGATGATTCTAC 28610412 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | || | || ||||||||||| ||||| ||||| || ||||| Sbjct 28610411 CTCTAGGGTTATTGTTTTGCCGGTCAAGGTTTTCACGAAAATCTGCAT 28610364 >seq5 Length=43630510 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| || || | ||| | ||| | |||| || ||||| || || |||||||| ||| Sbjct 14677269 GCCACCACGGAGACGGAGAACAAGGTGAAGAGTGGATTCCTTCTGGATGTTGTAGTCGGC 14677210 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | |||| |||||| || ||||| || || |||| |||||||| || || || || Sbjct 14677209 GAGAGTGCGGCCGTCTTCCAGCTGTTTTCCGGCGAAGATGAGACGTTGTTGGTCCGGTGG 14677150 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || ||||||||||| || || ||| | | || | ||||||| | ||| || Sbjct 14677149 GATTCCTTCTTTGTCTTGGATCTTGGCTTTCACATTGTCGATGGTGTCTGAAGATTCAAC 14677090 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 ||| | || | ||||| ||||| | ||||| ||||| || ||||| Sbjct 14677089 TTCGAGGGTTATTGTCTTCCCGGTTAGGGTTTTCACGAAGATCTGCAT 14677042 Score = 82.4 bits (90), Expect = 7e-11 Identities = 90/117 (77%), Gaps = 2/117 (2%) Strand=Plus/Plus Query 137203 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTTC 137261 || || |||| ||| ||||| ||||||||||||||||| | || | || | ||||| Sbjct 40492869 ACCAAGTGAAGTGTTGATTCCTTTTGTATGTTGTAATCAGCAAGAGTACGTCCA-TCTTC 40492927 Query 137262 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 137318 ||||| ||||| ||| | |||| | |||||| || ||||| || ||||||||||| Sbjct 40492928 CAGTTGCTTACCCGCAAAAATCAACCTTTGCTGGTCAGGAGGGATACCTTCTTTGTC 40492984 >seq6 Length=35275713 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | ||| | || ||||| | || || || ||||| ||||||||||| Sbjct 24039310 CCACCACGGAGACGGAGCACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAATCAGCA 24039251 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || | | || || || || || |||||| | |||||||| ||||| || || || Sbjct 24039250 AGGGTACGCCCATCCTCCAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCAGGTGGG 24039191 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||| ||||| ||||||| || | | || | || |||| || ||| Sbjct 24039190 ATTCCTTCCTTGTCTTGAATTTTTGCCTTAACATTGTCTATGGTATCTGAACTCTCAACT 24039131 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | ||| | |||||||| || | || || |||||||||||||| Sbjct 24039130 TCGAGAGTGATGGTCTTGCCAGTAAGAGTCTTGACGAATATTTGCAT 24039084 >seq8 Length=45569985 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | |||||| || | |||| |||||| || || || |||||||| || Sbjct 34999684 CCACCACGAAGACGCAATACAAGGTGAAGTGTAGACTCCTTCTGAATGTTGTAGTCAGCA 34999743 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || || || || | || || |||||| |||||| | |||||||| || || Sbjct 34999744 AGGGTCCTTCCATCCTCTAACTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGTGGG 34999803 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || || || ||||| |||||| |||| | || | ||||||| |||||| Sbjct 34999804 ATTCCCTCCTTGTCCTGTATTTTTGCCTTTACGTTATCAATTGTGTCTGAACTTTCTACC 34999863 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 137415 || | || | ||||| ||||||||||| || || || || |||||| || Sbjct 34999864 TCTAGGGTAATGGTCTTTCCGGTCAATGTCTTCACAAAGATCTGCATACCT 34999914 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||| | ||||| | || | |||| ||||| ||||| || ||||||||||| Sbjct 34999912 CCTCCCCTCAAACGAAGGACAAGGTGAAGGGTAGACTCTTTCTGAATGTTGTAATCAGCA 34999971 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || | |||||||| || || |||||| | |||| |||||||| || || || Sbjct 34999972 AGAGTCCGGCCATCTTCGAGCTGCTTTCCAGCAAAAATCAATCGTTGCTGGTCTGGGGGA 35000031 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 ||||| || ||||| |||||| || | | || | ||||||| | ||||| Sbjct 35000032 ATGCCCTCCTTGTCCTGAATTTTAGCCTTCACATTGTCAATAGTGTCTGAGCTCTCTACC 35000091 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || | ||| | || ||||| || | || || ||||| || |||||| Sbjct 35000092 TCCAAAGTAATTGTTTTGCCAGTAAGAGTCTTCACGAAAATCTGCATA 35000139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488530644428400