Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq3 129 1e-24 seq1 91.5 3e-13 >seq3 Length=55515152 Score = 129 bits (142), Expect = 1e-24 Identities = 557/870 (64%), Gaps = 27/870 (3%) Strand=Plus/Minus Query 110301 GACTATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATC 110360 || || ||||| |||||||| || ||| | ||||| | | || | || | | | Sbjct 2061388 GATTACTTTGGATTCAAAACCCTAGAAAGGTCTTATCTGTTGAAAGTTGAAGGAGTGGTT 2061329 Query 110361 ATTGAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATT 110420 | ||| | |||||||| ||| | | | ||| | |||| ||||| | ||||| || Sbjct 2061328 GTGGAAAGACCTCAACATATGATAATGAGGGTTTCTGTTGGAATTCACAAAGATGATGTT 2061269 Query 110421 AAAGCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCT-ATTCATGCTACTCC 110479 || ||| | | || |||| || | | | | | || | | | ||||||| |||| Sbjct 2061268 GAATCTGCTGTCAAAACTTATCATTTCATGTCTCAGA-GATGGTTCACTCATGCTTCTCC 2061210 Query 110480 TACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAAT 110539 ||| || || ||||| ||||| | | || ||| | |||||| | | | || Sbjct 2061209 TACACTTTTCAACGCCGGAACACCTAGGCCTCAGTTGAGTAGTTGCTTCTTGGTTTGCAT 2061150 Query 110540 TAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAA 110599 || || ||| |||||| || ||||||||| | | || || |||| | ||| ||| Sbjct 2061149 GAAAGAGGATAGTATTGAGGGGATTTATGATACATTGAAGGAGTGTGCTGTCATTAGTAA 2061090 Query 110600 AAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGG-AGCAAATATCG 110658 | ||||||| |||||| || ||||| |||| || | |||| || | ||| Sbjct 2061089 ATCTGCTGGAGGGATTGGTGTTTCTGTTCACAATATACGTGCCCAAGGTAGTTACATTCG 2061030 Query 110659 C--AACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACAC 110716 |||| || || | || | ||| ||||||| ||| | | || ||||| || || Sbjct 2061029 GGGAACA---AATGGAACGTCTAATGGTATTGTTCCGATGCTTCGTGTGTTCAATGATAC 2060973 Query 110717 TGCAAAATATGTGAATCAAGGTGGT---AAGAGAAATGGCTCATTTGCTATCTATCTCGA 110773 |||| ||||| |||| || || ||||| || || | |||||| | || | || Sbjct 2060972 TGCACGTTATGTTGATCAGGGGGGAGGCAAGAGGAAAGGTGCTTTTGCTGTGTACTTGGA 2060913 Query 110774 ACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGA 110833 || |||||| | ||||||||||| ||| | ||| | | |||||| ||| ||||| Sbjct 2060912 GCCATGGCATGCTGATATATTTGACTTCCTGGAATTGAAAATAAATCATGGAAAGGAAGA 2060853 Query 110834 ACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGT 110893 ||| | || || ||||||||||| || | ||| | | ||| | || ||| || | | Sbjct 2060852 GCAACGTGCTCGAGATTTATTTTACGCCCTTTGGGTGCCTGATCTCTTTATGGAAAGAGC 2060793 Query 110894 TCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGT 110953 || |||| ||||| || | || || || | |||||| | | ||| Sbjct 2060792 TCTGAGCGATGGGGAATGGTCCCTGTTCTGCCCCAATGAAGCACCTGGTTTGGCAGATTG 2060733 Query 110954 ATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAA 111013 | || |||| ||||| | || ||| | |||||||||| ||| || |||| Sbjct 2060732 TTGGGGTGAAGAATTTGATAAGCTGTACACTCAGTATGAAAAAGCAGGAAA----AGCAA 2060677 Query 111014 ACAA-ATTCCAGCTCAAGAA------CTTTGGTTCAAAATCCTTGAA-TCACAAGTTGAA 111065 | || ||| | ||||| | || ||||| ||| ||||| ||||| | ||| Sbjct 2060676 AAAAGATT---GTTCAAGCACGGACTCTGTGGTTTGCAAT-TTTGAAGTCACAGATAGAA 2060621 Query 111066 ACTGGAACTCCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAAT 111125 ||||||| |||||| || | | ||| ||| | ||| | ||| || || |||| Sbjct 2060620 ACTGGAAATCCTTACATGCTTTTTAAGGATACTTGCAATAGGAAAAGCAACCAGCAGAAT 2060561 Query 111126 TTAGGAACAATTAAGTCTAGTAATTTGTGC 111155 | || ||||||||||| ||| ||||| Sbjct 2060560 CTGGGCACAATTAAGTCATCAAATCTGTGC 2060531 >seq1 Length=52991155 Score = 91.5 bits (100), Expect = 3e-13 Identities = 315/485 (65%), Gaps = 21/485 (4%) Strand=Plus/Plus Query 131801 AAGAAAGCAGAATGGGCTATTAAATGGAT----TCAAGATGATTCCGCTAATTTTTCTAC 131856 |||||||| || ||||| || |||||||| ||||| ||||| |||| | Sbjct 19457316 AAGAAAGCTGATTGGGCGATGAAATGGATCGATTCAAGC-GATTC------TTTTGCAGA 19457368 Query 131857 AAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTAT 131916 |||| | || || ||||||||||||||||| || || || || || |||||||| || Sbjct 19457369 AAGAATCGTTGCGTTTGCTTGTGTTGAAGGAATCTTTTTCTCCGGAAGCTTCTGTGCGAT 19457428 Query 131917 CTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTC 131976 || ||| | || ||||| || || ||||| ||| | | || || || | | || || Sbjct 19457429 TTTCTGGTTGAAAAAGCGCGGTTTAATGCCGGGATTAACCTTCTCAAACGAGCTTATTTC 19457488 Query 131977 GAGAGATGAAGCATTGCATACTGAATTTGCTATATTAATCTATAGAAAATTTGCTGATAA 132036 | || |||| |||||| ||| || ||| | || | |||| | || || || Sbjct 19457489 ACGCGACGAAGGATTGCACTGTGATTTCGCT-TGTTTGT-TATACTCACTT--CTACGAA 19457544 Query 132037 ACTTGATGAAAATAATA-----TTAAACAACTTATAAGCGAAGCAGTTGATATCGAGAAG 132091 | | | || | | | | ||| || || | | || || ||||| || || | | Sbjct 19457545 AGAAGCT-AAGTTCAGAGCGCGTGAAAGAAATTGTTTGTGATGCTGTTGAAATTGAAAGG 19457603 Query 132092 GAGTTTATTACAGAAGCTTTGCCTTGCAATTTGATTGGGATGAATGCTGACTCTATGAAG 132151 |||||| | | || | |||||| ||| |||||||||||| | | |||| Sbjct 19457604 GAGTTTGTGTGCCACGCGCTTCCTTGCGCGTTGGTTGGGATGAATGGGGGTTTGATGAGT 19457663 Query 132152 GAGTACATTGAATTCGTTGCTGATCGTTTAATTAACCAACTTGGATATTCCAAGATTTAT 132211 ||| ||||| || ||||||||| | ||| | | ||||| | | ||| |||| Sbjct 19457664 ACGTATATTGAGTTTGTTGCTGATAGGTTATTGGGTGAGCTTGGTTGTGAAAAGGTTTAC 19457723 Query 132212 AACACCCAAAACCCCTATACATGGATGGAGTCAATTTCGCTTGAAGGTAAAACGAACTTC 132271 || || || || | | |||||||| | ||||||||| | || ||||| || || Sbjct 19457724 AATGTTCAGAATCCGTTTGATTGGATGGAATTGATTTCGCTTCAGGGAAAAACCAATTTT 19457783 Query 132272 TTCGA 132276 || || Sbjct 19457784 TTTGA 19457788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186779544392707