Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq979 174 1e-38 seq4 109 5e-19 seq8 102 8e-17 >seq979 Length=3763 Score = 174 bits (192), Expect = 1e-38 Identities = 322/461 (70%), Gaps = 16/461 (3%) Strand=Plus/Minus Query 25132 AATCCACACTTGAAGGTGCTGGCGTCGATCGGCGGCTGGACCTTGTCAGATCCATTCTTT 25191 ||||| || | ||| | ||| ||||||||||||||||||| |||| ||||| ||||| Sbjct 1359 AATCCCGACCTCAAGATCCTGCCGTCGATCGGCGGCTGGACGCTGTCCGATCCGTTCTTC 1300 Query 25192 CACATGCATGACGCGACCGTGCGTCAAACGTTCATCGATTCCGTCGAGGACTTTCTCTTG 25251 || |||| ||| || || ||| | |||| ||||||| |||| | || || Sbjct 1299 CAGCTGCACGACCCGGCCAAGCGCAAGGTGTTCGTCGATTCGACCGAGCAGTTGCTGCGC 1240 Query 25252 ACTTGGAAGTTTTTCGACGGCGTCGACATTGACTGGGAGTTTCCGGGCGGCAAAGGGGCC 25311 || |||||||| |||||||| |||||||| |||||||| || ||||||||||| || || Sbjct 1239 ACCTGGAAGTTCTTCGACGGTGTCGACATCGACTGGGAATTCCCGGGCGGCAAGGGCGCG 1180 Query 25312 AATCCTCACG-TCGGCAA--CGCCGAGCGCGACCGCGCCACATACACCGCCCTCCTGCAG 25368 || | | || ||||||| ||| || || ||| |||| || | || || || Sbjct 1179 AA-CGGCGCGATCGGCAATCCGCAGA-CG-GACGGCGCGCTGTATGTGACGCTGATGAAG 1123 Query 25369 GAGCTGCGCAATCGACTGGA-CGCG-CTCGGCGCTCGCACCGATCGCTA---CTATCCGC 25423 || ||||| | || || |||| |||||| ||||| || | ||| || Sbjct 1122 GAACTGCGGCAGATGCTCGACCGCGTGTCGGCG--GACACCG---GCAAGACCTACGAGC 1068 Query 25424 TGACATCGGCCATCAGCGCGGGCAACGACAAGATCGCCGTGGTCGATTACTCCGAAGCGC 25483 |||| ||||| ||| |||||||||| |||||||||| |||||| | ||| ||||| Sbjct 1067 TGACGTCGGCGATCGGCGCGGGCAAGGACAAGATCGACGTGGTGAACTACAAGGAAGCCA 1008 Query 25484 AAAAGTACCTCGACACAATTTTCTTGATGACATACGATTTTAAAGGCGCGTGGAGCAACA 25543 |||||| | ||| || ||| ||||| ||||| | | || |||| ||| | Sbjct 1007 CGAAGTACATGGACTACATCTTCGACATGACGTACGACTACTACGGTGCGTTCAGCCTGA 948 Query 25544 CCGATTTGGGCCATCAGGCGGCACTCTTCGCGCCCGCGTGG 25584 | || |||| || ||| |||| || ||||||||||||| Sbjct 947 CGGAGCTGGGTCACCAGACGGCGCTGCACGCGCCCGCGTGG 907 >seq4 Length=56582383 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||||||||||||| | | | ||||| |||||||||||||| || | || ||| Sbjct 31287773 CGCAAAACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATCAGCGAGCGTGCGCCCG 31287832 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| | || ||||||| |||| || | ||| ||||||||||| || || || ||| Sbjct 31287833 TCTTCCAATTGCTTACCGGCGAAGATAAGCCTCTGCTGATCTGGAGGGATACCCTCCTTA 31287892 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||| || ||||| | || | |||||| | |||||| || | || | Sbjct 31287893 TCTTGAATCTTAGCTTTCACATTATCAATAGTATCTGAACTCTCCACCTCCAAAGTAATA 31287952 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || ||||||| ||| |||| ||||||||||| Sbjct 31287953 GTCTTTCCAGTCAAAGTCTTTACAAAAATCTGCAT 31287987 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 131911 CAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATC 131970 |||||||||||| | | | || || ||||||||||| || || | ||| | ||| Sbjct 31287319 CAAAACCAAATGGAGGGTCGATTCCTTTTGAATGTTATAATCAGCAAGGGTCCTTCCATC 31287378 Query 131971 TTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 ||| ||||| ||||| | | |||| || | ||| ||||| ||||| || || || ||||| Sbjct 31287379 TTCAAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGATCGGGAGGGATACCCTCCTTATC 31287438 Query 132031 GGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGT 132090 ||| || ||||| | || | |||||| | ||| || || | || | || Sbjct 31287439 TTGAATCTTAGCTTTCACATTATCAATAGTATCTGAACTCTCAACCTCCAAAGTAATAGT 31287498 Query 132091 TTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||| || || || || |||| ||||| ||||| Sbjct 31287499 TTTTCCGGTAAGGGTCTTTACAAAAATTTGCAT 31287531 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||||||| | | | ||||| |||||||||||||| |||| | || ||| ||||| Sbjct 31306244 ACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATCGCCAAGTGTGCGCCCGTCTTCC 31306303 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 | || ||||||| |||| || | |||||||| ||||| || || || || || | Sbjct 31306304 AATTGCTTACCGGCGAAGATAAGCCTTTGTTGATCGGGAGGGATACCCTCCTTGTCTTGA 31306363 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || || ||||| | || | |||||| | ||| || || | || | || || Sbjct 31306364 ATCTTAGCTTTCACATTATCAATAGTATCTGAACTCTCAACCTCCAAAGTAATAGTCTTT 31306423 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||||| ||| || | || |||||||| Sbjct 31306424 CCAGTCAAAGTCTTAACAAATATCTGCAT 31306452 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 131911 CAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATC 131970 |||||||||||| | | ||||| || || ||||| || ||| | || | ||| Sbjct 31260040 CAAAACCAAATGGAGAGTGGACTCCTTCTGGATGTTATAATCGGCAAGTGTCCTTCCATC 31260099 Query 131971 TTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 ||| ||||| ||||| | | |||| || | ||||||||| ||||| || || || ||||| Sbjct 31260100 TTCAAGCTGCTTACCAGCAAAGATAAGCCTCTGTTGATCAGGAGGGATACCCTCCTTATC 31260159 Query 132031 GGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGT 132090 ||| || ||||| | || | |||||| | ||| || || | || | || Sbjct 31260160 TTGAATCTTAGCTTTCACATTATCAATAGTATCTGAACTCTCAACCTCCAAAGTAATAGT 31260219 Query 132091 TTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||| ||||| | ||| || | ||||| ||||| Sbjct 31260220 TTTTCCAGTTAAAGTCTTAACAAAAATTTGCAT 31260252 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||||||||||||| | | || || ||||| || || || || | ||| | | Sbjct 31287545 CGCAAAACCAAATGCAGAGTGGATTCCTTTTGGATATTATAATCAGCAAGGGTCCTTCCA 31287604 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| || ||||| || | | |||| || | ||| ||||| ||||| |||||||| ||| Sbjct 31287605 TCTTCAAGTTGTTTCCCTGCAAAGATAAGTCTCTGCTGATCAGGAGGGATGCCTTCCTTA 31287664 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||| || ||||| | || | |||||| | ||| || || | || | Sbjct 31287665 TCCTGAATCTTAGCTTTCACATTATCAATAGTATCTGAACTCTCAACCTCCAAAGTAATA 31287724 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| || || || || |||| ||||| ||||| Sbjct 31287725 GTTTTTCCGGTAAGGGTCTTTACAAAAATTTGCAT 31287759 >seq8 Length=45569985 Score = 102 bits (112), Expect = 8e-17 Identities = 247/366 (67%), Gaps = 11/366 (3%) Strand=Plus/Minus Query 46912 TAATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGCGACGAAGGACTACACACGG 46971 |||||||||| | || ||| |||||| | || || ||||||||||| ||||| | Sbjct 25025639 TAATGCCGGGATTAACTTTCTCAAACGAGCTTATTTCACGCGACGAAGGCTTACACTGTG 25025580 Query 46972 ACTTTGCGTGTCTCTATTACAAGACGCGCGTGAATGAGAAATTAAACTCGGA-CACGATC 47030 | ||||| ||| | | ||| ||| || | ||||| | | | || | || | Sbjct 25025579 ATTTTGCTTGTTTGTTATACT---CGCTATTGCGTCAGAAACTGAGTACAGAGCGCG-TG 25025524 Query 47031 CTGAGCATGTTTAGGGAGGCGGT-GAGCATCGAAAAGGAGTTTTTTACTGCG--GCGCTG 47087 ||| || || | || ||||| ||| || |||| ||||||| | |||| ||||| Sbjct 25025523 GTGAAGATTGTTCGTGATGCGGTTGAG-ATTGAAAGGGAGTTTGTA--TGCGACGCGCTT 25025467 Query 47088 CCCGTCGCCTTGCTGGGCATGAACGCACAGTCTATGTGCGAATATATTGAGTTTGTGGCG 47147 || ||| ||| | || ||||||| | | ||| | | |||||||||||||| || Sbjct 25025466 CCTTGCGCGTTGGTTGGGATGAACGGTGAATTGATGAGTCAGTATATTGAGTTTGTTGCT 25025407 Query 47148 GATCGTCTGTTGGTGCAGCTCGGACAACCGAAATATTTTAATGCTCGTAATCCGTTTGAG 47207 ||| | | |||| |||| || |||| || ||||| || ||||| ||||| Sbjct 25025406 GATAGGTTATTGGGTGAGCTTGGTTGTGAGAAAGTTTATAATGTTCAGAATCCATTTGAT 25025347 Query 47208 TTTATGAACAACATTTCGCTCGAGGGCAAAACCAATTTTTTCGAGAAACGAGTCGGAGAG 47267 | ||| | |||||||| |||| ||||||||||| || ||||| || || || ||| Sbjct 25025346 TGGATGGATTTGATTTCGCTTCAGGGGAAAACCAATTTCTTTGAGAAGCGCGTTGGGGAG 25025287 Query 47268 TATAAG 47273 ||| || Sbjct 25025286 TATCAG 25025281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476598170641320