Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq979 125 6e-24 seq4 114 1e-20 seq1 89.7 5e-13 >seq979 Length=3763 Score = 125 bits (138), Expect = 6e-24 Identities = 137/182 (75%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 60238 AATCCCCACATCAAAGTGTTGCCCTCGATCGGAGGTTGGACTCTATCCGATCCGTTCTTT 60297 |||||| || |||| | |||| |||||||| || ||||| || |||||||||||||| Sbjct 1359 AATCCCGACCTCAAGATCCTGCCGTCGATCGGCGGCTGGACGCTGTCCGATCCGTTCTTC 1300 Query 60298 TACTTTCACGATACGGATAAACGAAAGATTTTTGTAGATTCTGTCGTGGAGTTTCTACAG 60357 | | ||||| ||| || || ||| | || || ||||| || | |||| || | Sbjct 1299 CAGCTGCACGACCCGGCCAAGCGCAAGGTGTTCGTCGATTCGACCGAGCAGTTGCTGCGC 1240 Query 60358 ACGTGGAAATTTTTCGACGGTGTCGACATCGACTGGGAGTTTCCCGGCGGAAAAGGTGCC 60417 || ||||| || |||||||||||||||||||||||||| || || ||||| || || || Sbjct 1239 ACCTGGAAGTTCTTCGACGGTGTCGACATCGACTGGGAATTCCCGGGCGGCAAGGGCGCG 1180 Query 60418 AA 60419 || Sbjct 1179 AA 1178 >seq4 Length=56582383 Score = 114 bits (126), Expect = 1e-20 Identities = 171/239 (72%), Gaps = 3/239 (1%) Strand=Plus/Minus Query 25166 TTAAACAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTC 25225 ||||||| |||||| | || || |||||||| || || ||| | ||||| | || || Sbjct 31260716 TTAAACAG-ATGCAAATCTTCGTGAAAACATTGACTGGTAAAACCATCACCCTTGAGGTG 31260658 Query 25226 GAAGCCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCG 25285 ||| | ||||| || || | || || || ||| || |||||||| || || Sbjct 31260657 GAATCATCAGATACAATTGATAATGTCAAGGCCAAGATTCAAGACAAAGAGGGAATCCCT 31260598 Query 25286 CCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGC 25345 || |||||||| || || || | | || ||||||||||| |||| |||| | ||| Sbjct 31260597 CCTGATCAGCAGAGGCTTATCTTTGCTGGGAAACAACTCGAGGATGGAAGAACCCT-AGC 31260539 Query 25346 -GATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 ||||| || || || || ||||| ||| ||||||| ||| | ||||||||||| |||| Sbjct 31260538 TGATTATAACATCCAGAAGGAATCTACCCTTCATTTGGTGCTTAGATTGAGAGGTGGAA 31260480 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGA-AGCCAA 25233 ||||| | ||||| || || || || ||||| | || || | || || || || | Sbjct 31306452 ATGCAGATATTTGTTAAGACTTTGACTGGAAAGACTATTACTTTGGAGGTTGAGAGTTCA 31306393 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 |||||||| || | || ||| || ||| || || |||||||| || |||||||| Sbjct 31306392 -GATACTATTGATAATGTGAAAGCTAAGATTCAAGACAAGGAGGGTATCCCTCCCGATCA 31306334 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||||| || || | || ||| || ||| | ||||| | | | | |||||||||| Sbjct 31306333 ACAAAGGCTTATCTTCGCCGGTAAGCAATTGGAAGACGGGCGCACACTTGGCGATTACAA 31306274 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 |||||||| || |||||| ||||||| ||| | ||||||||||| |||| Sbjct 31306273 CATTCAAAAGGAGTCCACCCTTCATTTGGTGCTTAGATTGAGAGGTGGAA 31306224 Score = 105 bits (116), Expect = 6e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || ||||| || || || |||||| | ||||| | || || ||| || Sbjct 31260480 ATGCAGATATTCGTAAAGACTTTGACTGGAAAAACCATCACCTTAGAGGTTGAATCCTCG 31260421 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || | || || || || || ||||||||||| || || |||||| Sbjct 31260420 GATACCATTGATAATGTCAAGGCCAAGATACAGGACAAAGAGGGTATCCCTCCTGATCAG 31260361 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGC-GATTACAA 25353 || || || || | | || |||||||| ||||||| || | | ||| ||||| || Sbjct 31260360 CAGAGGCTTATCTTTGCAGGGAAACAACTAGAAGATGGAAGGACCCT-AGCTGATTATAA 31260302 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 || || || ||||| ||| ||||||| ||| | ||||||||||| |||| Sbjct 31260301 CATCCAGAAGGAATCTACCCTTCATTTGGTGCTTAGATTGAGAGGCGGAA 31260252 Score = 105 bits (116), Expect = 6e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| |||||||| || |||||| | ||||| | || || || | Sbjct 31306680 ATGCAGATCTTTGTGAAAACATTGACAGGAAAAACCATCACTCTTGAGGTAGAGAGTTCC 31306621 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || | || || || || || ||||||||||| || || |||||| Sbjct 31306620 GATACAATTGATAATGTCAAGGCCAAGATCCAAGACAAAGAGGGTATCCCTCCTGATCAG 31306561 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGC-GATTACAA 25353 || || || || | | || ||||| ||||| |||| |||| | ||| ||||| || Sbjct 31306560 CAGAGGCTTATCTTTGCAGGTAAACAGCTCGAGGATGGAAGAATCCT-AGCTGATTATAA 31306502 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 || || || ||||| ||| ||||||| ||| | ||||||||||| |||| Sbjct 31306501 CATCCAGAAGGAATCTACCCTTCATTTGGTGCTTAGATTGAGAGGTGGAA 31306452 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | ||||| || ||||| ||||||||| | ||||| | || || ||| | Sbjct 31288216 CATGCAGATATTTGTGAAGACATTGACCGGAAAAACAATCACCCTTGAGGTTGAATCATC 31288157 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||||| || || | || || || || || ||||||||||| || || ||||| Sbjct 31288156 TGATACAATTGATAATGTCAAGGCCAAGATCCAAGACAAAGAGGGTATCCCTCCTGATCA 31288097 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGC-GATTACA 25352 ||| || || || | | || ||||| ||||| |||| |||| | ||| ||||| | Sbjct 31288096 GCAGAGGCTTATCTTTGCAGGGAAACAGCTCGAGGATGGAAGAACCCT-AGCTGATTATA 31288038 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 | || || || ||||| ||| ||||| | ||| | ||||| ||||| |||| Sbjct 31288037 ACATCCAGAAGGAATCTACCCTTCATCTGGTGCTTAGATTAAGAGGTGGAA 31287987 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| |||||||| || || ||| | ||||| |||| || || Sbjct 31288443 ATGCAAATCTTTGTGAAAACATTGACTGGCAAAACTATCACCCTCGAGGTGGAGAGTTCT 31288384 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || | || ||| || ||| || || || ||||| || ||||||||| Sbjct 31288383 GATACCATAGACAACGTTAAAGCTAAGATTCAAGACAAGGAAGGTATTCCTCCCGATCAG 31288324 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||||| || || | | || |||||| | ||||||| | | | |||||||| Sbjct 31288323 CAAAGGCTTATATTTGCTGGTAAACAATTGGAAGATGGCCGCACCCTTGCGGATTACAAC 31288264 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || ||||| ||||||||| |||| | ||| | |||||||||| || Sbjct 31288263 ATCCAAAAGGAATCCACCCTTCACCTTGTGCTGCGATTGAGAGGTGG 31288217 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGA-AGCCAA 25233 |||||| | |||||||| || | ||||||||| | || || | || || || || | Sbjct 31287531 ATGCAAATTTTTGTAAAGACCCTTACCGGAAAAACTATTACTTTGGAGGTTGAGAGTTCA 31287472 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 |||||||| || | || ||| || ||| ||||| |||||||| || |||||||| Sbjct 31287471 -GATACTATTGATAATGTGAAAGCTAAGATTCAAGATAAGGAGGGTATCCCTCCCGATCA 31287413 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| || || || | | || || || || ||||||| || | | ||||| || Sbjct 31287412 GCAGAGGCTTATCTTTGCTGGTAAGCAGCTTGAAGATGGAAGGACCCTTGCTGATTATAA 31287353 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAG 25389 |||||||| ||||| ||| | ||||| || || || Sbjct 31287352 CATTCAAAAGGAATCGACCCTCCATTTGGTTTTGAG 31287317 Score = 86.0 bits (94), Expect = 6e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | ||||| || ||| | || || || | || || | || || ||| | Sbjct 31259797 CATGCAAATATTTGTGAAGACACTTACTGGGAAGACTATTACCTTGGAGGTGGAAAGCTC 31259738 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 |||||||| || | || ||| ||| || ||||| |||||||| || || ||||| Sbjct 31259737 TGATACTATTGATAATGTGAAAGCAAAGATACAAGATAAGGAGGGTATTCCCCCAGATCA 31259678 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| || || |||| | ||||| || | || |||| | | | | | |||||||| Sbjct 31259677 GCAGAGGCTTATTTTTGCTGGCAAGCAGTTGGAGGATGGTCGTACTCTGGCAGATTACAA 31259618 Query 25354 TATTCAAAAAGAATCCACCATTCAT 25378 |||||| |||||||| ||| | ||| Sbjct 31259617 TATTCAGAAAGAATCTACCCTGCAT 31259593 Score = 82.4 bits (90), Expect = 7e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGA-AGCCAA 25233 ||||| | |||||||| || | || ||||| | || || | || || || ||| | Sbjct 36294327 ATGCAGATTTTTGTAAAGACCCTTACAGGAAAGACAATTACTTTGGAGGTAGAGAGCTCA 36294386 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||||| || || | ||||| ||| ||| || ||||||||||| || || ||||| Sbjct 36294387 -GATACGATTGACAATGTAAAGGCAAAGATTCAGGACAAAGAGGGTATTCCCCCAGATCA 36294445 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| || ||||||| | || || || || ||||||| |||| | | |||||||| Sbjct 36294446 GCAGAGGCTCATTTTTGCTGGAAAGCAGCTTGAAGATGGCAGAACTCTTGCTGATTACAA 36294505 Query 25354 TATTCAAAAAGAATCCACCATTCA 25377 || || ||||| || || |||| Sbjct 36294506 CATCCAGAAAGAGTCAACTCTTCA 36294529 >seq1 Length=52991155 Score = 89.7 bits (98), Expect = 5e-13 Identities = 144/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 || |||||| | || || ||||| || ||||| ||| | || || | || || ||| | Sbjct 28610360 CATCATGCAGATTTTCGTGAAAACCTTGACCGGCAAAACAATAACCCTAGAGGTAGAATC 28610419 Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 ||| || ||||| | || ||| ||||| || ||||| || || || || || Sbjct 28610420 ATCCGACACAATCGACAACGTCAAAGCCAAAATCCAAGACAAAGAAGGAATTCCACCTGA 28610479 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTA 25350 || ||| | ||||| | || ||| ||||| || ||||| | ||||| | | ||||| Sbjct 28610480 CCAACAACGTCTCATCTTCGCCGGAAAACAGCTAGAAGACGGTAGAACTCTTGCGGATTA 28610539 Query 25351 CAATATTCAAAAAGAATCCACCATTCA 25377 |||||| || ||||| ||||| |||| Sbjct 28610540 CAATATCCAGAAAGAGTCCACGCTTCA 28610566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445082232231840