Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq4 98.7 8e-16 seq5 86.0 5e-12 >seq4 Length=56582383 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||| ||||| || ||| | ||||| ||||| |||||| |||| ||| | Sbjct 31259796 ATGCAAATATTTGTGAAGACACTTACTGGGAAGACTATTACCTTGGAGGTGGAAAGCTCT 31259737 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| || ||| | |||||| ||| || || || || || | ||| ||||| Sbjct 31259736 GATACTATTGATAATGTGAAAGCAAAGATACAAGATAAGGAGGGTATTCCCCCAGATCAG 31259677 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || |||||||||| ||| ||||| || || || ||| | ||| ||| |||||||| Sbjct 31259676 CAGAGGCTTATTTTTGCTGGCAAGCAGTTGGAGGATGGTCGTACTCTGGCAGATTACAAT 31259617 Query 106440 ATACAAAAAGAATCTACACTACAT 106463 || || ||||||||||| || ||| Sbjct 31259616 ATTCAGAAAGAATCTACCCTGCAT 31259593 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| |||||||| || || | || || ||||| || || |||| ||| Sbjct 31287303 ATGCAGATTTTTGTGAAGACTCTTACCGGAAAGACAATAACTTTGGAGGTTGAAAGTTCT 31287244 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | ||| | | |||||| ||| ||| |||||||| ||| | || || || Sbjct 31287243 GATACAATTGACAACGTGAAAGCAAAGATTCAGGACAAAGAGGGCATTCCTCCAGACCAG 31287184 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || ||||| |||| |||||||| || || |||||| ||| ||| ||||| || Sbjct 31287183 CAGAGGCTAATTTTCGCGGGCAAGCAGTTGGAAGATGGCCGTACTCTGGCTGATTATAAT 31287124 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || || ||||||||||| || ||||| || |||||| | ||||| || Sbjct 31287123 ATCCAGAAAGAATCTACTCTGCATTTGGTTTTGAGGCTTCGAGGTGG 31287077 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 |||||| || |||||||| || |||||||| ||||| ||||| |||| || Sbjct 31306453 AATGCAGATATTTGTTAAGACTTTGACTGGAAAGACTATTACTTTGGAGGTTGAGAGTTC 31306394 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 ||| || ||| | |||||| || ||| ||||| || || | || ||||| Sbjct 31306393 AGATACTATTGATAATGTGAAAGCTAAGATTCAAGACAAGGAGGGTATCCCTCCCGATCA 31306334 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 |||||||||||| | || || || ||||| ||||| || | ||||||||||| Sbjct 31306333 ACAAAGGCTTATCTTCGCCGGTAAGCAATTGGAAGACGGGCGCACACTTGGCGATTACAA 31306274 Query 106439 CATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGA 106487 ||| ||||| || || || || ||||| || | || || |||| ||| Sbjct 31306273 CATTCAAAAGGAGTCCACCCTTCATTTGGTGCTTAGATTGAGAGGTGGA 31306225 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||| || || |||||||||||||| || ||||| ||| | || ||| | Sbjct 31260708 ATGCAAATCTTCGTGAAAACATTGACTGGTAAAACCATCACCCTTGAGGTGGAATCATCA 31260649 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | ||| | || || || ||| |||||||| || | || |||||| Sbjct 31260648 GATACAATTGATAATGTCAAGGCCAAGATTCAAGACAAAGAGGGAATCCCTCCTGATCAG 31260589 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || |||||||| | ||| || |||||| | || ||| | ||| | | ||||| ||| Sbjct 31260588 CAGAGGCTTATCTTTGCTGGGAAACAACTCGAGGATGGAAGAACCCTAGCTGATTATAAC 31260529 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGA 106487 || || || |||||||| || ||||| || | || || |||| ||| Sbjct 31260528 ATCCAGAAGGAATCTACCCTTCATTTGGTGCTTAGATTGAGAGGTGGA 31260481 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 |||||||||||||||||| || || ||||| || || ||||| |||| || Sbjct 31260253 AATGCAAATTTTTGTTAAGACTTTAACTGGAAAAACTATTACTTTGGAGGTTGAGAGTTC 31260194 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 ||| || ||| | |||||| || ||| || || || || | || |||||| Sbjct 31260193 AGATACTATTGATAATGTGAAAGCTAAGATTCAAGATAAGGAGGGTATCCCTCCTGATCA 31260134 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 ||| |||||||| | ||| || || || | |||||| | || | | |||||| || Sbjct 31260133 ACAGAGGCTTATCTTTGCTGGTAAGCAGCTTGAAGATGGAAGGACACTTGCCGATTATAA 31260074 Query 106439 CATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 ||| || || || || || || ||||| || |||||| | || || || Sbjct 31260073 CATCCAGAAGGAGTCCACTCTCCATTTGGTTTTGAGGCTTCGTGGGGG 31260026 >seq5 Length=43630510 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 106353 GACAAAGAAGGCGTGCCCGTTGATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAA 106412 ||||||||||| | || ||| || |||||| | |||| |||||| || ||| | ||| Sbjct 40492984 GACAAAGAAGGTATCCCTCCTGACCAGCAAAGGTTGATTTTTGCGGGTAAGCAACTGGAA 40492925 Query 106413 GATTCTAAAACTATGGGCGATTACAACATACAAAAAGAATCTACACTACATTTAGTATTG 106472 ||| ||| | | ||||||||||||||||| ||||| ||||| || || ||| | Sbjct 40492924 GATGGACGTACTCTTGCTGATTACAACATACAAAAGGAATCAACACTTCACTTGGTACTC 40492865 Query 106473 AGGTTACGAGGAGGA 106487 ||| | |||||||| Sbjct 40492864 AGGCTCAGAGGAGGA 40492850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402318876281696