Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1 201 2e-45 seq8 170 3e-36 seq276 165 1e-34 seq7 165 1e-34 seq1299 109 8e-18 >seq1 Length=52991155 Score = 201 bits (222), Expect = 2e-45 Identities = 376/546 (69%), Gaps = 20/546 (4%) Strand=Plus/Plus Query 1455734 AACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAA 1455793 ||||| |||| || | ||||||| |||| |||| || |||||||||||| || Sbjct 19456929 AACCCAGACCGATTCTGCATGTTCCCAATCCAATACCCAAAAATCTGGGAAATGTACAAA 19456988 Query 1455794 AAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGA---CACGGT 1455850 |||| |||| ||||| || |||||||| || || ||||| || | |||| || | Sbjct 19456989 AAAG-CCGAAGCCTCATTCTGGACCGCTGAAGAAGTCGATCTTTCCTCCGATCTCAAG-- 19457045 Query 1455851 CCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTT 1455910 |||||| || | ||||| ||| ||||| |||||| || ||||||||||| || Sbjct 19457046 -CACTGGCAAAACCTCACCGACGGCGAACGCCACTTCATCTCTCATGTCCTCGCCTTCTT 19457104 Query 1455911 TCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCC 1455970 ||| ||| ||| |||||||| || || || ||||| | ||||||||||| ||| Sbjct 19457105 -CGCTGCCTCCGACGGCATCGTCCTTGAAAATCTCGCCGGTAGATTTATGAAAGAAATCC 19457163 Query 1455971 AATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTG 1456030 || | | || |||||| || ||||| |||||||| || || |||||||||||||||| Sbjct 19457164 AAGTCTCTGAAGCACGTGCCTTCTACGGTTTCCAGATTGCAATTGAAAACATCCACTCTG 19457223 Query 1456031 AAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCT 1456090 | | || || || || |||| || || | | || | | || ||| | | | | | Sbjct 19457224 AGATGTATTCTCTTCTCCTCGAAACGTATATAAGCGATTCCGCTGAAAAGAATCGCTTAT 19457283 Query 1456091 TTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGA 1456150 ||| || || || || | || | | ||| || || || ||||||||||| |||| Sbjct 19457284 TTCATGCAATTGAAACAATTCCATGTATCGCGAAGAAAGCTGATTGGGCGATGAAATGGA 19457343 Query 1456151 TCAA--CAAGGAGGGCCTCGACAC-TTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGA 1456206 || | |||| ||| | ||||| || | |||| | ||||| | || || Sbjct 19457344 TCGATTCAAG--------CGATTCTTTTGCAGAAAGAATCGTTGCGTTTGCTTGTGTTGA 19457395 Query 1456207 GGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCAT 1456266 || ||||||||||| || || ||||| || || || ||| | || |||||||| | || Sbjct 19457396 AGGAATCTTTTTCTCCGGAAGCTTCTGTGCGATTTTCTGGTTGAAAAAGCGCGGTTTAAT 19457455 Query 1456267 GCCCGG 1456272 ||| || Sbjct 19457456 GCCGGG 19457461 >seq8 Length=45569985 Score = 170 bits (188), Expect = 3e-36 Identities = 369/544 (68%), Gaps = 16/544 (3%) Strand=Plus/Minus Query 1455734 AACCCGAACCGCTT-TGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCA 1455792 ||||| |||| || ||| ||||||| |||| |||| || |||||||||||| | Sbjct 25026162 AACCCAGACCGATTCTGTA-TGTTCCCAATCCAATACCCAAAAATCTGGGAAATGTACAA 25026104 Query 1455793 AAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCC 1455852 ||||| |||| ||||| || ||||||||||| || ||||| || | |||| | Sbjct 25026103 AAAAG-CCGAAGCCTCTTTCTGGACCGCCGAAGAAGTCGATCTTTCCTCCGATCTTCAAC 25026045 Query 1455853 ACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTC 1455912 ||||| || | ||||| ||| ||||| |||||| ||| |||||||||| || | Sbjct 25026044 ACTGGAACAACCTCACCGACGGCGAACGCCACTTCATCTCTCACATCCTCGCCTTCTT-C 25025986 Query 1455913 GCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAA 1455972 |||||| ||| || ||||| ||| || || ||||| | || |||||||| || ||| Sbjct 25025985 GCCGCCTCCGACGGTATCGTCCTCGAAAATCTCGCCGGAAGATTCATGAAAGAAGTTCAA 25025926 Query 1455973 TTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAA 1456032 | | || || ||| || |||||||| || ||||| || |||||||||||||| || Sbjct 25025925 ATCTCTGAAGCGCGTGCTTTCTACGGGTTTCAAATCGCTATTGAAAACATCCACTCAGAG 25025866 Query 1456033 ACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTT 1456092 | || || || || |||| || || | | || | | || ||| | | | ||| Sbjct 25025865 ATGTATTCTCTTCTCCTCGAAACGTATATAAGCGATTCTGCTGAAAAGAATCGATTATTT 25025806 Query 1456093 CGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATC 1456152 | ||| || ||||| | |||| | || || || || ||||| |||| |||||| Sbjct 25025805 CACGCAATTGACACAATTCCGTGTATTGCTAAGAAAGCTGATTGGGCTTTGAAATGGATC 25025746 Query 1456153 AA--CAAGGAGGGCCTCGACAC-TTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGG 1456208 | |||| ||| | ||||| || | |||| | || || | || || | Sbjct 25025745 GATTCAAG--------CGATTCTTTTGCAGAAAGAATCGTTGCTTTCGCTTGTGTTGAAG 25025694 Query 1456209 GCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGC 1456268 | || || ||||| || || ||||| || || || ||| | || || ||||| | |||| Sbjct 25025693 GAATTTTCTTCTCCGGAAGCTTCTGTGCGATTTTCTGGTTGAAAAAACGCGGTTTAATGC 25025634 Query 1456269 CCGG 1456272 | || Sbjct 25025633 CGGG 25025630 >seq276 Length=24472 Score = 165 bits (182), Expect = 1e-34 Identities = 368/546 (67%), Gaps = 20/546 (4%) Strand=Plus/Plus Query 1455734 AACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAA 1455793 ||||| |||| || | ||||||| |||| |||| || |||||||||||| || Sbjct 22418 AACCCAGACCGATTCTGCATGTTCCCAATCCAATACCCAAAAATCTGGGAAATGTACAAA 22477 Query 1455794 AAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGA---CACGGT 1455850 |||| |||| ||||| || ||||||||||| || || || || | |||| || | Sbjct 22478 AAAG-CCGAAGCCTCATTCTGGACCGCCGAAGAAGTTGATCTTTCCTCCGATCTCAAG-- 22534 Query 1455851 CCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTT 1455910 |||||| || | |||| ||| ||||| |||||| ||||| || ||||| || Sbjct 22535 -CACTGGAACAACCTCACAGACGGCGAACGCCACTTCATCTCTCACGTTCTTGCCTTCTT 22593 Query 1455911 TCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCC 1455970 ||||||| || || || || || || || ||||| | || |||||||| |||| Sbjct 22594 -CGCCGCCTCAGACGGAATTGTCCTTGAAAATCTTGCCGGAAGATTCATGAAAGAAGTCC 22652 Query 1455971 AATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTG 1456030 || | | || |||||| || || || ||||| || || || ||||||||||| |||| Sbjct 22653 AAATCTCCGAAGCACGTGCCTTCTATGGTTTCCAAATTGCAATTGAAAACATCCATTCTG 22712 Query 1456031 AAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCT 1456090 | | ||||| || || || || || || | | || | | || ||| | | | | | Sbjct 22713 AGATGTACTCCCTTCTCATTGAAACATATATAAGCGATTCTGCTGAAAAGAATCGCTTAT 22772 Query 1456091 TTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGA 1456150 ||| || || || || | || | | ||||||||| || ||||| ||||| |||| Sbjct 22773 TTCATGCAATTGAGACAATTCCATGTATCGCGAAAAAGGCTGATTGGGCAATGAAATGGA 22832 Query 1456151 TCAA--CAAGGAGGGCCTCGACAC-TTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGA 1456206 | | |||| ||| | ||||| || | |||| | ||||| | || || Sbjct 22833 TTGATTCAAG--------CGATTCTTTTGCTGAAAGAATCGTTGCATTTGCTTGTGTAGA 22884 Query 1456207 GGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCAT 1456266 || || || ||||| || || || ||||| || || ||| | || |||||||| | || Sbjct 22885 AGGAATTTTCTTCTCCGGAAGCTTTTGCGCGATTTTCTGGTTGAAAAAGCGCGGTTTAAT 22944 Query 1456267 GCCCGG 1456272 ||| || Sbjct 22945 GCCAGG 22950 >seq7 Length=49172423 Score = 165 bits (182), Expect = 1e-34 Identities = 368/546 (67%), Gaps = 20/546 (4%) Strand=Plus/Minus Query 1455734 AACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAA 1455793 ||||| |||| || | ||||||| |||| |||| || |||||||||||| || Sbjct 10197670 AACCCAGACCGATTCTGCATGTTCCCAATCCAATACCCAAAAATCTGGGAAATGTACAAA 10197611 Query 1455794 AAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGA---CACGGT 1455850 |||| |||| ||||| || ||||||||||| || || || || | |||| || | Sbjct 10197610 AAAG-CCGAAGCCTCATTCTGGACCGCCGAAGAAGTTGATCTTTCCTCCGATCTCAAG-- 10197554 Query 1455851 CCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTT 1455910 |||||| || | |||| ||| ||||| |||||| ||||| || ||||| || Sbjct 10197553 -CACTGGAACAACCTCACAGACGGCGAACGCCACTTCATCTCTCACGTTCTTGCCTTCTT 10197495 Query 1455911 TCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCC 1455970 ||||||| || || || || || || || ||||| | || |||||||| |||| Sbjct 10197494 -CGCCGCCTCAGACGGAATTGTCCTTGAAAATCTTGCCGGAAGATTCATGAAAGAAGTCC 10197436 Query 1455971 AATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTG 1456030 || | | || |||||| || || || ||||| || || || ||||||||||| |||| Sbjct 10197435 AAATCTCCGAAGCACGTGCCTTCTATGGTTTCCAAATTGCAATTGAAAACATCCATTCTG 10197376 Query 1456031 AAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCT 1456090 | | ||||| || || || || || || | | || | | || ||| | | | | | Sbjct 10197375 AGATGTACTCCCTTCTCATTGAAACATATATAAGCGATTCTGCTGAAAAGAATCGCTTAT 10197316 Query 1456091 TTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGA 1456150 ||| || || || || | || | | ||||||||| || ||||| ||||| |||| Sbjct 10197315 TTCATGCAATTGAGACAATTCCATGTATCGCGAAAAAGGCTGATTGGGCAATGAAATGGA 10197256 Query 1456151 TCAA--CAAGGAGGGCCTCGACAC-TTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGA 1456206 | | |||| ||| | ||||| || | |||| | ||||| | || || Sbjct 10197255 TTGATTCAAG--------CGATTCTTTTGCTGAAAGAATCGTTGCATTTGCTTGTGTAGA 10197204 Query 1456207 GGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCAT 1456266 || || || ||||| || || || ||||| || || ||| | || |||||||| | || Sbjct 10197203 AGGAATTTTCTTCTCCGGAAGCTTTTGCGCGATTTTCTGGTTGAAAAAGCGCGGTTTAAT 10197144 Query 1456267 GCCCGG 1456272 ||| || Sbjct 10197143 GCCAGG 10197138 >seq1299 Length=2149 Score = 109 bits (120), Expect = 8e-18 Identities = 295/446 (66%), Gaps = 14/446 (3%) Strand=Plus/Plus Query 165454 TCGTCGGTCCGTGTTCGGCACACGACCCGGACGCCGTTGTCGAGTATGGTCGGCGGTTGC 165513 ||||||| ||||| ||| |||||| ||||||||| | || | | || ||| | | Sbjct 741 TCGTCGGGCCGTGCTCGATTCACGACACGGACGCCGCGCTGGAATTCGCGCGCCGGCT-C 799 Query 165514 GCGCCCTCGTACGGGCCGAGGTCGACGACGCCCTTTGTGTGGTCATGCGCGCCTATGTCG 165573 ||||| | ||||| | || ||| | || || || |||||| | || ||| Sbjct 800 GCGCCGCTG--CGGGCGCATTACGCCGATACGCTCGAGGTCGTGATGCGCACGTACTTCG 857 Query 165574 AAAAGCCGCGCACGACCGTTGGATGGAAGGGCCTGGCCAGTGACCCCGATCTTGATGGCT 165633 ||||||||||||| || || || |||||||| || || || || || || || Sbjct 858 AAAAGCCGCGCACCACGGTCGGCTGGAAGGGGTTGATCAACGATCCGCTGCTCGACGGAA 917 Query 165634 CGTGCCGCCTGGCTGATGGCCTTGATACATCGCGCCGCCTGCTGCGTGATCTCGTCGTCG 165693 | ||| | | || || || | |||| |||||||||| ||| |||| Sbjct 918 GCTATCGCGTCGACGACGGGCTGCGTCTTGCGCGTCGCCTGCTGC------TCGACGTCA 971 Query 165694 ACG---TCGACCAACCCGTGGCCGTCGAGTTTCTCAGTCCTCTGGTGGCCCCCTATTTGG 165750 ||| ||| | || || || |||||||||| ||| || ||| ||||| | | Sbjct 972 ACGCACTCGGCATGCCGGTCGCGACCGAGTTTCTCGATCCGCTCACGGCGCCCTACCTCG 1031 Query 165751 CAGACCTGGTCACGTGGGGCGCCGTCGGTGCGCGCACCACCGAGAGCCAGGTGCACCGCG 165810 || ||||| | |||||||| | || || ||||| |||||| ||| | ||||| Sbjct 1032 ACGATCTGGTGTCCTGGGGCGCGATTGGCGCACGCACGACCGAGTCGCAGATTCACCGGC 1091 Query 165811 AGATGGCGTCGGCGCT-GCCGCTGCCCATTGGCTTCAAAAACAGCACCGACGGCAGCGTG 165869 |||| || || | || | || ||| || |||||||| ||| |||||||||||| |||| Sbjct 1092 AGATCGCATCCGGCCTCGATGC-GCCGATCGGCTTCAAGAACGGCACCGACGGCAACGTG 1150 Query 165870 GCGACGGCCCTCGATGCCGTGCGCAC 165895 || || |||| || || ||||| Sbjct 1151 AAGATCGCGATCGACGCGGTCCGCAC 1176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177600259830294