Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_026601.1 Length=37238 Score E Sequences producing significant alignments: (Bits) Value seq1420 129 1e-25 >seq1420 Length=1851 Score = 129 bits (142), Expect = 1e-25 Identities = 233/336 (69%), Gaps = 6/336 (2%) Strand=Plus/Plus Query 7889 CGATGGCCGCTACATGATCAAGAAAGCGATCCAGGAAACCATCCAGTTCGACGAGCGTAT 7948 ||| |||||||| ||| || || |||||||| |||| |||||| || || | Sbjct 1 CGACGGCCGCTATCGCATCCAGCGCGCCATCCAGGACCGCATCGCGTTCGATGAACGCCT 60 Query 7949 CCAGGCCGCCCGCGAGCTGATCGAGGAATGCCTTCGCGACTGGACCCAGGGCGCCAGGCC 8008 ||||| ||| ||||||| || || |||||||||||||| | || ||| | || Sbjct 61 GCAGGCGGCCAAATCCATGATCGACGAGTGTCTTCGCGACTGGACTCTGGATGCCCGCCC 120 Query 8009 CGAAGTGGTCA--CCCTGGTAACCAACGC-TTTCCGCACTGACACGAAGGGCGAAATCCG 8065 || | ||| | | || || | || ||| || || |||| | | ||| ||||| Sbjct 121 TGAGAT--TCAGGCGATCGTGACGCAGGCGTTTGCG-ACCGACAAGGAAGGCCAAATCAA 177 Query 8066 TACCGCCCGAGTGCTCGCCCTGCGCCGCCTGGACATCCAAGACGAGCGCTGGCTGCGAGC 8125 |||| ||| |||||||| ||||| || |||||||| || |||||||||| ||| Sbjct 178 CACCGGCCGCGTGCTCGCGCTGCGTCGATTGGACATCACCGATCCGCGCTGGCTGGAAGC 237 Query 8126 CATGAATGCGATTGGCGACGCCTGCCAGGCGGTGGGTTCCAAGGCCTACATCCGCGTCTA 8185 ||| ||||| ||||| ||| |||| | | || |||| | ||| |||||||||| Sbjct 238 GATGCGGGCGATCGGCGAAGCCCTGCAGGTGATCGGCAGCAAGTCATACGTCCGCGTCTA 297 Query 8186 TGAACGGGTCGGCGACAGCGACCAGTACCAGCAGAT 8221 || || |||||||||| ||||| ||| ||||| Sbjct 298 CGAGCGCGTCGGCGACACGGACCAATACGTACAGAT 333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119036908456800