Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq276 206 2e-48 seq7 201 9e-47 seq8 194 1e-44 >seq276 Length=24472 Score = 206 bits (228), Expect = 2e-48 Identities = 577/873 (66%), Gaps = 17/873 (2%) Strand=Plus/Plus Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766 |||| ||||| ||||| | | || ||| |||||||||||||||| | || ||||| | Sbjct 22437 TGTTCCCAATCCAATACCCAAAAATCTGGGAAATGTACAAAAAAGCCGAAGCCTCATTCT 22496 Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGACTT--AGCACATTGGATTGCATTAAA-AC 43823 |||| || |||||||||||| | | || | ||||| | | | | | | | || Sbjct 22497 GGACCGCCGAAGAAGTTGATCTTTCCTCCGATCTCAAGCAC-TGGAACAACCTCACAGAC 22555 Query 43824 CACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAG 43883 | ||| || || || ||| ||| | || || || || || ||||| || | Sbjct 22556 GGC--GAACGCCACTTCATCTCTCACGTTCTTGCCTTCTTCGCCGCCTCAGACGGAATTG 22613 Query 43884 TCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTT 43943 || ||||||| | | | | || | ||||||| ||| | | |||||||| | Sbjct 22614 TCCTTGAAAATCTTGCCGGAAGATTCATGAAAGAAGTCCAAATCTCCGAAGCACGTGCCT 22673 Query 43944 TTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAG 44003 | ||||| || |||||||| || ||||| || ||||| || |||||| ||||| || | Sbjct 22674 TCTATGGTTTCCAAATTGCAATTGAAAACATCCATTCTGAGATGTACTCCCTTCTCATTG 22733 Query 44004 ATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTAC 44063 | || || || | ||| || ||| |||| || ||| |||| || || ||| | | Sbjct 22734 AAACATATATAAGCGATTCTGCTGAAAAGAATCGCTTATTTCATGCAATTGAGACAATTC 22793 Query 44064 CTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTTG 44123 | || | || || || ||||| | |||||||| |||||| |||||||||| Sbjct 22794 CATGTATCGCGAAAAAGGCTGATTGGGCAATGAAATGGATTGATTCAAGCGATTCTTTTG 22853 Query 44124 GAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGAT-CGTTTGCG 44182 ||| || | || || ||||| ||| ||||| |||||||| || ||| | |||||| Sbjct 22854 CTGAAAGAATCGTTGCATTTGCTTGTGTAGAAGGAATTTTCTTCTCCGGAAGCTTTTGCG 22913 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 | || || ||||| || || || ||||| ||||| ||||| || || ||||| ||| | Sbjct 22914 -CGATTTTCTGGTTGAAAAAGCGCGGTTTAATGCCAGGGTTAACATTCTCAAACGAGCTT 22972 Query 44243 ATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGT--TACTTGGATATCTAG 44300 || ||||| ||||| | || || ||||||||||| |||| |||| | | | Sbjct 22973 ATTTCACGTGACGAAGGTCTGCACTGTGATTTTGCTTGTTTGTTATACTCACTTCTACAA 23032 Query 44301 GAGACGATAAGCCTTCATGTAAGACAATTACAGATATTGT-TGTAGAGGCAGTAAAGATA 44359 ||| ||| ||||| || | | || ||||| || | | || || | || Sbjct 23033 AAGAAACTAA--CTTCA---GAGCGTGTGAAGGAAATTGTATGCA-ATGCTGTTGAAATT 23086 Query 44360 GAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAATGAACTTTTG 44419 |||| |||||| | | |||| | ||| || | || ||||||| ||| Sbjct 23087 GAACGTGAATTTGTCTGCAAAGCACTTCCTTGCGCGTTGGTTGGGATGAATGGTGGATTG 23146 Query 44420 ATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGTTGCGATAAA 44479 |||| |||||||| | |||| ||| | ||| | || || ||||| || || Sbjct 23147 ATGAGTACTTATATTGAGTTTGTTGCTGATAGATTATTGGGTGAGCTTGGTTGTGAAAAG 23206 Query 44480 CACTATATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACA 44539 |||| ||| || || |||||||||| ||||| ||||| | |||| || || Sbjct 23207 GTTTATAATGTTCAGAATCCGTTTGATTGGATGGAGTTGATTTCCCTTCAAGGGAAGACG 23266 Query 44540 AACTTTTTTGAAAAACGCGTTGGAGAATATCAG 44572 || || ||||| || || ||||| || |||||| Sbjct 23267 AATTTCTTTGAGAAGCGTGTTGGGGAGTATCAG 23299 >seq7 Length=49172423 Score = 201 bits (222), Expect = 9e-47 Identities = 400/585 (68%), Gaps = 8/585 (1%) Strand=Plus/Minus Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766 |||| ||||| ||||| | | || ||| |||||||||||||||| | || ||||| | Sbjct 10197651 TGTTCCCAATCCAATACCCAAAAATCTGGGAAATGTACAAAAAAGCCGAAGCCTCATTCT 10197592 Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGACTT--AGCACATTGGATTGCATTAAA-AC 43823 |||| || |||||||||||| | | || | ||||| | | | | | | | || Sbjct 10197591 GGACCGCCGAAGAAGTTGATCTTTCCTCCGATCTCAAGCAC-TGGAACAACCTCACAGAC 10197533 Query 43824 CACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAG 43883 | ||| || || || ||| ||| | || || || || || ||||| || | Sbjct 10197532 GGC--GAACGCCACTTCATCTCTCACGTTCTTGCCTTCTTCGCCGCCTCAGACGGAATTG 10197475 Query 43884 TCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTT 43943 || ||||||| | | | | || | ||||||| ||| | | |||||||| | Sbjct 10197474 TCCTTGAAAATCTTGCCGGAAGATTCATGAAAGAAGTCCAAATCTCCGAAGCACGTGCCT 10197415 Query 43944 TTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAG 44003 | ||||| || |||||||| || ||||| || ||||| || |||||| ||||| || | Sbjct 10197414 TCTATGGTTTCCAAATTGCAATTGAAAACATCCATTCTGAGATGTACTCCCTTCTCATTG 10197355 Query 44004 ATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTAC 44063 | || || || | ||| || ||| |||| || ||| |||| || || ||| | | Sbjct 10197354 AAACATATATAAGCGATTCTGCTGAAAAGAATCGCTTATTTCATGCAATTGAGACAATTC 10197295 Query 44064 CTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTTG 44123 | || | || || || ||||| | |||||||| |||||| |||||||||| Sbjct 10197294 CATGTATCGCGAAAAAGGCTGATTGGGCAATGAAATGGATTGATTCAAGCGATTCTTTTG 10197235 Query 44124 GAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGAT-CGTTTGCG 44182 ||| || | || || ||||| ||| ||||| |||||||| || ||| | |||||| Sbjct 10197234 CTGAAAGAATCGTTGCATTTGCTTGTGTAGAAGGAATTTTCTTCTCCGGAAGCTTTTGCG 10197175 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 | || || ||||| || || || ||||| ||||| ||||| || || ||||| ||| | Sbjct 10197174 -CGATTTTCTGGTTGAAAAAGCGCGGTTTAATGCCAGGGTTAACATTCTCAAACGAGCTT 10197116 Query 44243 ATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTA 44287 || ||||| ||||| | || || ||||||||||| |||||| Sbjct 10197115 ATTTCACGTGACGAAGGTCTGCACTGTGATTTTGCTTGTTTGTTA 10197071 >seq8 Length=45569985 Score = 194 bits (214), Expect = 1e-44 Identities = 395/583 (68%), Gaps = 4/583 (1%) Strand=Plus/Minus Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766 |||| ||||| ||||| | | || ||| |||||||||||||||| | || || || | Sbjct 25026143 TGTTCCCAATCCAATACCCAAAAATCTGGGAAATGTACAAAAAAGCCGAAGCCTCTTTCT 25026084 Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCATTAAAACC-A 43825 |||| || |||||||| ||| | | || | ||| |||| || ||| | Sbjct 25026083 GGACCGCCGAAGAAGTCGATCTTTCCTCCGATCTTCAACACTGGAA--CAACCTCACCGA 25026026 Query 43826 CAA-GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGT 43884 | ||| || || || ||| | | || || || || || |||||| || || Sbjct 25026025 CGGCGAACGCCACTTCATCTCTCACATCCTCGCCTTCTTCGCCGCCTCCGACGGTATCGT 25025966 Query 43885 CAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTT 43944 | |||||| | | | | || | ||||||||||| | | ||||| || ||| Sbjct 25025965 CCTCGAAAATCTCGCCGGAAGATTCATGAAAGAAGTTCAAATCTCTGAAGCGCGTGCTTT 25025906 Query 43945 TTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGA 44004 || ||||||||||| || || ||||| || || || || ||||| |||||| | || Sbjct 25025905 CTACGGGTTTCAAATCGCTATTGAAAACATCCACTCAGAGATGTATTCTCTTCTCCTCGA 25025846 Query 44005 TACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACC 44064 ||||| || | ||| || ||| ||||||| ||| | || || || ||| | || Sbjct 25025845 AACGTATATAAGCGATTCTGCTGAAAAGAATCGATTATTTCACGCAATTGACACAATTCC 25025786 Query 44065 TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTTGG 44124 ||| | ||||| || ||||| | |||||||| |||||| |||||||||| Sbjct 25025785 GTGTATTGCTAAGAAAGCTGATTGGGCTTTGAAATGGATCGATTCAAGCGATTCTTTTGC 25025726 Query 44125 AGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGC 44184 |||| || | || || || || ||| ||||| |||||||| || ||| || || Sbjct 25025725 AGAAAGAATCGTTGCTTTCGCTTGTGTTGAAGGAATTTTCTTCTCCGGAAGCTTCTGTGC 25025666 Query 44185 CATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAAT 44244 || || ||||| || ||||| ||||| ||||| || || || || ||||| ||| | || Sbjct 25025665 GATTTTCTGGTTGAAAAAACGCGGTTTAATGCCGGGATTAACTTTCTCAAACGAGCTTAT 25025606 Query 44245 AAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTA 44287 || || ||||||||||| || ||||||||||| |||||| Sbjct 25025605 TTCACGCGACGAAGGCTTACACTGTGATTTTGCTTGTTTGTTA 25025563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397445406182935