Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq276 158 2e-33 seq7 158 2e-33 seq8 116 5e-21 seq3 116 5e-21 seq2 107 2e-18 >seq276 Length=24472 Score = 158 bits (174), Expect = 2e-33 Identities = 411/617 (67%), Gaps = 15/617 (2%) Strand=Plus/Minus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || ||| ||||| || || || |||||||| || |||||||| || ||| Sbjct 23007 GCAAAATCACAGTGCAGACCTTCGTCACGTGAAATAAGCTCGTTTGAGAATGTTAACCCT 22948 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 ||||| | ||| ||||| |||||||| |||| ||||| || ||||||||||| || Sbjct 22947 GGCATTAAACCGCGCTTTTTCAACCAGAAAATCGCGCAAAAGCTTCCGGAGAAGAAAATT 22888 Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAAC 122838 || || ||||| ||||| |||| | | ||| || || || | ||| ||||| | Sbjct 22887 CCTTCTACACAAGCAAATGCAACGATTCTTTCAGCAAAAGA---ATCGCTTGAATCAATC 22831 Query 122839 CATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAAT 122898 |||||||||||||| | ||||| ||| | |||||||| | || | || || | |||| Sbjct 22830 CATTTCATTGCCCAATCAGCCTTTTTCGCGATACATGGAATTGTCTCAATTGCATGAAAT 22771 Query 122899 AACTGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTCG 122958 || | |||||||||| ||| | || ||| | ||||| | || || | || Sbjct 22770 AAGCGATTCTTTTCAGCAGAATCGCTTATATATGTTTCAATGAGAAGGGAGTACATCTCA 22711 Query 122959 CCATGAACCATTTCATTATGGCA--TTGATATGCGTAGAATGAGCGCGCTTCGCTTATCT 123016 ||| | ||||| || ||| ||| | | ||||| | || |||||| || | Sbjct 22710 GAATGGATGTTTTCA--ATTGCAATTTGGAAACCATAGAAGGCACGTGCTTCGGAGATTT 22653 Query 123017 GAACCTCATCCGCAAAATTGTTATTG--ATATTCTCAAAAACAATTCCATCGGACCCAGC 123074 | || || | || | | || | | ||| |||| |||||||| || || | || Sbjct 22652 GGACTTCTT--TCATGAATCTTCCGGCAAGATTTTCAAGGACAATTCCGTCTGAGGCGGC 22595 Query 123075 AAAGAATGCCAGGATGTACTTTATGAATTTCTTTTCATTTTCATTCAGGGTCTTCCAGTC 123134 ||||| || || | || ||||| | ||| || | ||| | ||||||| Sbjct 22594 GAAGAAGGCAAGAACGTGAGAGATGAAGTGGCGTTCGCCGTCTGTGAGGTTGTTCCAGTG 22535 Query 123135 GTCAAGATCTTTGGACAAATCAACTTCTTCCGCAGTCCA-ATTGCTCATTTGAGCCTTTT 123193 | ||||| ||| | |||||||||||| || ||||| | || || | || |||| Sbjct 22534 CTTGAGATCGGAGGAAAGATCAACTTCTTCGGCGGTCCAGAATGAGGCTTCG-GCTTTTT 22476 Query 123194 TATAGAGTTCCCAGAGTTGTGGATACTTCAGGGGGAAGACTGTA-AATCTGTTTAGGGTG 123252 | || | |||||||| || ||| || | | ||||| | || | |||| || | || | Sbjct 22475 TGTACATTTCCCAGATTTTTGGGTATTGGATTGGGAACA-TGCAGAATCGGTCTGGGTTT 22417 Query 123253 GGGGCCAGAATAGGTTC 123269 || || |||| ||||| Sbjct 22416 GGTGCGAGAAGTGGTTC 22400 >seq7 Length=49172423 Score = 158 bits (174), Expect = 2e-33 Identities = 411/617 (67%), Gaps = 15/617 (2%) Strand=Plus/Plus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || ||| ||||| || || || |||||||| || |||||||| || ||| Sbjct 10197081 GCAAAATCACAGTGCAGACCTTCGTCACGTGAAATAAGCTCGTTTGAGAATGTTAACCCT 10197140 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 ||||| | ||| ||||| |||||||| |||| ||||| || ||||||||||| || Sbjct 10197141 GGCATTAAACCGCGCTTTTTCAACCAGAAAATCGCGCAAAAGCTTCCGGAGAAGAAAATT 10197200 Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAAC 122838 || || ||||| ||||| |||| | | ||| || || || | ||| ||||| | Sbjct 10197201 CCTTCTACACAAGCAAATGCAACGATTCTTTCAGCAAAAGA---ATCGCTTGAATCAATC 10197257 Query 122839 CATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAAT 122898 |||||||||||||| | ||||| ||| | |||||||| | || | || || | |||| Sbjct 10197258 CATTTCATTGCCCAATCAGCCTTTTTCGCGATACATGGAATTGTCTCAATTGCATGAAAT 10197317 Query 122899 AACTGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTCG 122958 || | |||||||||| ||| | || ||| | ||||| | || || | || Sbjct 10197318 AAGCGATTCTTTTCAGCAGAATCGCTTATATATGTTTCAATGAGAAGGGAGTACATCTCA 10197377 Query 122959 CCATGAACCATTTCATTATGGCA--TTGATATGCGTAGAATGAGCGCGCTTCGCTTATCT 123016 ||| | ||||| || ||| ||| | | ||||| | || |||||| || | Sbjct 10197378 GAATGGATGTTTTCA--ATTGCAATTTGGAAACCATAGAAGGCACGTGCTTCGGAGATTT 10197435 Query 123017 GAACCTCATCCGCAAAATTGTTATTG--ATATTCTCAAAAACAATTCCATCGGACCCAGC 123074 | || || | || | | || | | ||| |||| |||||||| || || | || Sbjct 10197436 GGACTTCTT--TCATGAATCTTCCGGCAAGATTTTCAAGGACAATTCCGTCTGAGGCGGC 10197493 Query 123075 AAAGAATGCCAGGATGTACTTTATGAATTTCTTTTCATTTTCATTCAGGGTCTTCCAGTC 123134 ||||| || || | || ||||| | ||| || | ||| | ||||||| Sbjct 10197494 GAAGAAGGCAAGAACGTGAGAGATGAAGTGGCGTTCGCCGTCTGTGAGGTTGTTCCAGTG 10197553 Query 123135 GTCAAGATCTTTGGACAAATCAACTTCTTCCGCAGTCCA-ATTGCTCATTTGAGCCTTTT 123193 | ||||| ||| | |||||||||||| || ||||| | || || | || |||| Sbjct 10197554 CTTGAGATCGGAGGAAAGATCAACTTCTTCGGCGGTCCAGAATGAGGCTTCG-GCTTTTT 10197612 Query 123194 TATAGAGTTCCCAGAGTTGTGGATACTTCAGGGGGAAGACTGTA-AATCTGTTTAGGGTG 123252 | || | |||||||| || ||| || | | ||||| | || | |||| || | || | Sbjct 10197613 TGTACATTTCCCAGATTTTTGGGTATTGGATTGGGAACA-TGCAGAATCGGTCTGGGTTT 10197671 Query 123253 GGGGCCAGAATAGGTTC 123269 || || |||| ||||| Sbjct 10197672 GGTGCGAGAAGTGGTTC 10197688 Score = 118 bits (130), Expect = 1e-21 Identities = 226/333 (68%), Gaps = 0/333 (0%) Strand=Plus/Plus Query 11482 ATCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAA 11541 |||||| || || | |||||| || |||||||| | || ||||| | | | | ||| Sbjct 2726576 ATCAAGAATTTCAGGTCTATTAGTAGCAGCAATAACTATAACACCAGTATTACTATTAAA 2726635 Query 11542 GCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCAT 11601 |||||||| || || | || ||||| | |||||||||||| |||||||| || Sbjct 2726636 ACCATCCATTTCAGTCAACAACTGATTCAATGTTTGTTCTCTTTCATCATTCCCTCCACC 2726695 Query 11602 ACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGG 11661 | ||||| || | || | || || ||||| ||||||||||| || || | ||| || Sbjct 2726696 AATACCAGTACCTCTCTGTCTCCCTACAGCATCTATCTCATCAATAAATACCAAACAAGG 2726755 Query 11662 TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAA 11721 | |||||| || | | ||| | ||| | || ||| ||||| ||||| ||||| Sbjct 2726756 TGAATTTTCTTTTGCCTTATTAAACAAATCTCTCACTCTTGAAGCACCAACACCGACAAA 2726815 Query 11722 CATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCGCGAT 11781 |||||| | || | || |||| | |||||| || |||| ||| || || || Sbjct 2726816 CATCTCGATGAACTCTGAACCAGATAGAGAAAAGAATGGAACTTTTGCTTCTCCTGCAAT 2726875 Query 11782 GGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 ||| || | | |||||||| || ||||| Sbjct 2726876 TGCTTTTGCTAACAATGTCTTTCCTGTCCCTGG 2726908 >seq8 Length=45569985 Score = 116 bits (128), Expect = 5e-21 Identities = 395/612 (65%), Gaps = 5/612 (1%) Strand=Plus/Plus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || ||| | || || || || |||||||| || |||||||| || || Sbjct 25025573 GCAAAATCACAGTGTAAGCCTTCGTCGCGTGAAATAAGCTCGTTTGAGAAAGTTAATCCC 25025632 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 ||||| | ||| || || |||||||| |||| || ||||| ||||||||||| || Sbjct 25025633 GGCATTAAACCGCGTTTTTTCAACCAGAAAATCGCACAGAAGCTTCCGGAGAAGAAAATT 25025692 Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAAC 122838 || || ||||| || || |||| | | ||| || || || | ||| ||| | | Sbjct 25025693 CCTTCAACACAAGCGAAAGCAACGATTCTTTCTGCAAAAGA---ATCGCTTGAATCGATC 25025749 Query 122839 CATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAAT 122898 ||||||| ||||| | || ||||| ||||||| || | || | || || | |||| Sbjct 25025750 CATTTCAAAGCCCAATCAGCTTTCTTAGCAATACACGGAATTGTGTCAATTGCGTGAAAT 25025809 Query 122899 AACTGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTCG 122958 || | |||||||||| ||| | || || | || | | ||||| | || Sbjct 25025810 AATCGATTCTTTTCAGCAGAATCGCTTATATACGTTTCGAGGAGAAGAGAATACATCTCT 25025869 Query 122959 CCATGAACCATTTCATTATGGCATTGATATGCGTAGAATGAGCGCGCTTCGCTTATCTGA 123018 || | ||||| || | |||| | ||||||| | |||||||| || ||| Sbjct 25025870 GAGTGGATGTTTTCAATAGCGATTTGAAACCCGTAGAAAGCACGCGCTTCAGAGATTTGA 25025929 Query 123019 ACCTCATCCGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAG 123078 || || | | || | || ||| || | || || || ||||| | || ||| Sbjct 25025930 ACTTCTTTCATGAATCTTCCGGCGAGATTTTCGAGGACGATACCGTCGGAGGCGGCGAAG 25025989 Query 123079 AATGCCAGGATGTACTTTATGAATTTCTTTTCATTTTCATTCAGGGTCTTCCAGTCGTCA 123138 || || ||||||| ||||| | ||| || | ||| | ||||||| | | Sbjct 25025990 AAGGCGAGGATGTGAGAGATGAAGTGGCGTTCGCCGTCGGTGAGGTTGTTCCAGTGTTGA 25026049 Query 123139 AGATCTTTGGACAAATCAACTTCTTCCGCAGTCCA-ATTGCTCATTTGAGCCTTTTTATA 123197 ||||| ||| | ||| |||||||| || ||||| | | || | || ||||| || Sbjct 25026050 AGATCGGAGGAAAGATCGACTTCTTCGGCGGTCCAGAAAGAGGCTTCG-GCTTTTTTGTA 25026108 Query 123198 GAGTTCCCAGAGTTGTGGATACTTCAGGGGGAAGACTGTAAATCTGTTTAGGGTGGGGGC 123257 | |||||||| || ||| || | | ||||| | |||| || | || | || || Sbjct 25026109 CATTTCCCAGATTTTTGGGTATTGGATTGGGAACATACAGAATCGGTCTGGGTTTGGAGC 25026168 Query 123258 CAGAATAGGTTC 123269 |||| |||||| Sbjct 25026169 GAGAAGAGGTTC 25026180 >seq3 Length=55515152 Score = 116 bits (128), Expect = 5e-21 Identities = 376/576 (65%), Gaps = 11/576 (2%) Strand=Plus/Plus Query 111230 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 111289 || || || |||||||| | || || ||||| ||||| | ||| |||| | Sbjct 2060463 GGTAGTGCAATTGATGCAAGGTTACACACAGCAGTCTCTGTTGGACTTGTATACTGGATT 2060522 Query 111290 ATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTG 111349 || || || || | || || |||||| || |||| ||||| ||||| || ||| | Sbjct 2060523 ATCTCAGTGCACAGATTTGATGACTTAATTGTGCCCAGATTCTGCTGGTTGCTTTTCCTA 2060582 Query 111350 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATA 111409 ||||| | |||||| | |||||||| || | || || || ||||||| || | ||| Sbjct 2060583 TTGCAAGTATCCTTAAAAAGCATGTAAGGATTTCCAGTTTCTATCTGTGACTTCAAAATT 2060642 Query 111410 GCCTTCCAAACA-TCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTT 111468 || ||| | | || | | || | ||||| || || ||| | || |||| Sbjct 2060643 GCAAACCACAGAGTCCGTG-CTTGAACAATCTTTTTTGCTTTTCCTGCTTTTTCATACTG 2060701 Query 111469 TGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGG 111528 ||||| || ||||| || |||||| || | | ||| ||||| | | || Sbjct 2060702 AGTGTACAGCTTATCAAATTCTTCACCCCAACAATCTGCCAAACCAGGTGCTTCATTGGG 2060761 Query 111529 ACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTT--CATGAAAAGGTCTGGAATC 111586 ||||| || ||||||| ||| | |||| | ||| ||| || || || || | | Sbjct 2060762 GCAGAACAGGGACCATTCCCCATCG--CTCAGAGCTCTTTCCATAAAGAGATCAGGCACC 2060819 Query 111587 CACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAAC 111646 || |||| |||| | ||||| | || |||||| | || || || | | || Sbjct 2060820 CAAAGGGCGTAAAATAAATCTCGAGCACGTTGCTCTTCCTTTCCATGATTTATTTTCAAT 2060879 Query 111647 TCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTT 111706 || ||||| || | ||||| || ||||||||||| | || || || | || ||||| Sbjct 2060880 TCCAGGAAGTCAAATATATCAGCATGCCATGGCTCCAAGTACACAGCAAAAG-CACCTTT 2060938 Query 111707 CGAC--GC--CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGG 111762 | | || || | |||| ||||| || || || | || || || |||||||| || Sbjct 2060939 CCTCTTGCCTCCCCCCTGATCAACATAACGTGCAGTATCATTGAACACACGAAGCATCGG 2060998 Query 111763 AATAATACCATCTGATTGACCATTTGTCCCCCGAAT 111798 || |||||||| || |||||||| |||||||| Sbjct 2060999 AACAATACCATTAGACGTTCCATTTGTTCCCCGAAT 2061034 Score = 82.4 bits (90), Expect = 1e-10 Identities = 138/199 (69%), Gaps = 8/199 (4%) Strand=Plus/Minus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| ||||||||||| || | | |||||||| || ||||| |||||||||||| | Sbjct 53796586 AAATCCATCCATCTCAGTCAAAAGCTGATTAATAGTCTGTTCCCTCTCATCATTTCCACC 53796527 Query 11599 CATACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACA 11658 | |||||| | | || | || || ||||||||||||||||| || ||||| || Sbjct 53796526 ACCAAGACCAGCTCCTCTCTGTCTCCCAACAGCATCAATCTCATCAATAAACACAATGCA 53796467 Query 11659 TGGTTGATT----TTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACAC 11714 ||| || ||| || | ||||| | ||| | ||| || ||||| || | Sbjct 53796466 CGGTGCCTTCGACTTC----GCCTTCTCAAACAAATCCCTAACTCTAGAAGCACCAACTC 53796411 Query 11715 CAACAAACATCTCCACAAA 11733 | ||||||| |||||||| Sbjct 53796410 CCACAAACAGTTCCACAAA 53796392 >seq2 Length=45729672 Score = 107 bits (118), Expect = 2e-18 Identities = 320/490 (65%), Gaps = 8/490 (2%) Strand=Plus/Minus Query 11452 ATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGC 11511 ||||||||| ||||| | | | || ||||| ||||| | | || || || || Sbjct 15379729 ATCAAAACGTCCCGGTCTCAATAAAGCAGAGTCAAGAATATCAGCCCTGTTGGTTGCTGC 15379670 Query 11512 AATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAAT 11571 ||| || | || ||||| | | || || |||||||| || || | | ||| || | Sbjct 15379669 AATGACAATGATTCCAGTATTACCCTCGAATCCATCCATTTCTGTCAAAAGTTGGTTGAG 15379610 Query 11572 TGTTTGTTCTCTCTCATCATTTGCTGGCATACCA---CCAGCACTGCGTTGCTTGCCCAC 11628 || |||||||| ||||| || || |||| |||| | |||||| | ||||| Sbjct 15379609 GGTCTGTTCTCTTTCATCGTTCCCTCC---ACCAATTCCAGTGCCTCGTTGCCTTCCCAC 15379553 Query 11629 CGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAG 11688 |||||||| ||||||| || |||||||| || || || ||| ||| || | Sbjct 15379552 AGCATCAATTTCATCAACAAAAACAATACAAGGAGCGTTCTCTTTGGCCTTTTTGAATAA 15379493 Query 11689 ATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCA 11748 ||||||||| | ||||| | ||| ||||||||||| ||||| | | | ||| | Sbjct 15379492 ATCGCGAACTCGAGAAGCACCAATACCGACAAACATCTCAACAAACTCAGAACCTGAG-A 15379434 Query 11749 CTG-GATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCG 11807 || || ||||||||| || |||||| || || || || | || ||||| || | Sbjct 15379433 TTGAGAAAAATGGGACACCTGCTTCACCGGCAATAGCCTTAGCTAATAGTGTCTTCCCAG 15379374 Query 11808 TACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCACTTCCAAAATATC 11867 | ||||| ||| |||||| | ||| || || || ||| | || | | Sbjct 15379373 TTCCTGGGGGACCAATGAGAAGAACCCCTTTTGGTATGCGAGCCCCAATAGCAGTGAACC 15379314 Query 11868 TCTCGGGTTGCTTGAGAAAATCCACAATCTCTTCAAGTTCATCTTTGGCCGCGTCAATCC 11927 |||| || | || ||||| ||||| | ||| || || | ||||| | || | || Sbjct 15379313 TCTCAGGCTTTTTTAGAAACTCCACTACCTCCATAAAATCCTGCTTGGCTTCATCTACCC 15379254 Query 11928 CCTCAACATC 11937 | ||||||| Sbjct 15379253 CGGCAACATC 15379244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628014831175200