Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq276 136 5e-27 seq7 136 5e-27 seq3 125 9e-24 seq1 111 2e-19 seq8 102 1e-16 seq2 96.9 4e-15 >seq276 Length=24472 Score = 136 bits (150), Expect = 5e-27 Identities = 174/239 (73%), Gaps = 3/239 (1%) Strand=Plus/Minus Query 130016 GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 130075 ||||| || ||| ||||| |||||||| || || || || || ||||| | ||| Sbjct 23007 GCAAAATCACAGTGCAGACCTTCGTCACGTGAAATAAGCTCGTTTGAGAATGTTAACCCT 22948 Query 130076 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 130135 ||||| | ||| ||||| ||||||||||||||||| ||||| || |||||||| || Sbjct 22947 GGCATTAAACCGCGCTTTTTCAACCAGAAAATCGCGCAAAAGCTTCCGGAGAAGAAAATT 22888 Query 130136 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAAC 130195 || || ||||| || || |||| || | |||||||| || | ||| ||||| | Sbjct 22887 CCTTCTACACAAGCAAATGCAACGATTCTTTCAGCAAAAGAATCG---CTTGAATCAATC 22831 Query 130196 CACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAA 130254 || ||||| ||||| | ||||||||| ||||||| || | |||| || || | ||| Sbjct 22830 CATTTCATTGCCCAATCAGCCTTTTTCGCGATACATGGAATTGTCTCAATTGCATGAAA 22772 >seq7 Length=49172423 Score = 136 bits (150), Expect = 5e-27 Identities = 174/239 (73%), Gaps = 3/239 (1%) Strand=Plus/Plus Query 130016 GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 130075 ||||| || ||| ||||| |||||||| || || || || || ||||| | ||| Sbjct 10197081 GCAAAATCACAGTGCAGACCTTCGTCACGTGAAATAAGCTCGTTTGAGAATGTTAACCCT 10197140 Query 130076 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 130135 ||||| | ||| ||||| ||||||||||||||||| ||||| || |||||||| || Sbjct 10197141 GGCATTAAACCGCGCTTTTTCAACCAGAAAATCGCGCAAAAGCTTCCGGAGAAGAAAATT 10197200 Query 130136 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAAC 130195 || || ||||| || || |||| || | |||||||| || | ||| ||||| | Sbjct 10197201 CCTTCTACACAAGCAAATGCAACGATTCTTTCAGCAAAAGAATCG---CTTGAATCAATC 10197257 Query 130196 CACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAA 130254 || ||||| ||||| | ||||||||| ||||||| || | |||| || || | ||| Sbjct 10197258 CATTTCATTGCCCAATCAGCCTTTTTCGCGATACATGGAATTGTCTCAATTGCATGAAA 10197316 >seq3 Length=55515152 Score = 125 bits (138), Expect = 9e-24 Identities = 376/575 (65%), Gaps = 9/575 (2%) Strand=Plus/Plus Query 118704 GGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATA 118763 || || || ||||| || || |||||||||| ||||| | || |||| || Sbjct 2060463 GGTAGTGCAATTGATGCAAGGTTACACACAGCAGTCTCTGTTGGACTTGTATACTGGATT 2060522 Query 118764 ATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTG 118823 || || ||||||| ||||| |||||| ||||||| |||| || || || | Sbjct 2060523 ATCTCAGTGCACAGATTTGATGACTTAATTGTGCCCAGATTCTGCTGGTTGCTTTTCCTA 2060582 Query 118824 TTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATA 118883 || || | |||||| |||||||||| || | || || || | || ||||| | ||| Sbjct 2060583 TTGCAAGTATCCTTAAAAAGCATGTAAGGATTTCCAGTTTCTATCTGTGACTTCAAAATT 2060642 Query 118884 GCCTTCCAGACA-TCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTT 118942 || ||| | | || | ||| | ||| | || ||| || ||| || |||| Sbjct 2060643 GCAAACCACAGAGTCCGT-GCTTGAACAATCTTTTTTGCTTTTCCTGCTTTTTCATACTG 2060701 Query 118943 TGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGG 119002 ||||| || ||||| ||||||||| |||| | || ||||| | || || Sbjct 2060702 AGTGTACAGCTTATCAAATTCTTCACCCCAACAATCTGCCAAACCAGGTGCTTCATTGGG 2060761 Query 119003 GCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTT--CATGAAGAGGTCTGGGATC 119060 |||||| || ||||||| ||| | |||| | ||| ||| ||||| || || | | Sbjct 2060762 GCAGAACAGGGACCATTCCCCATCG--CTCAGAGCTCTTTCCATAAAGAGATCAGGCACC 2060819 Query 119061 CAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAAC 119120 || || || | || | ||| ||| || ||||| | || ||||| | ||| Sbjct 2060820 CAAAGGGCGTAAAATAAATCTCGAGCACGTTGCTCTTCCTTTCCATGATTTATTTTCAAT 2060879 Query 119121 TCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTA 119180 |||| ||||| | ||||| || ||||| || |||| |||||| || | | || || Sbjct 2060880 TCCAGGAAGTCAAATATATCAGCATGCCATGGCTCCAAGTACACAGCAAAAGCACCTTTC 2060939 Query 119181 CGA---CGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGA 119237 | | || |||| | ||||| | ||||| | || || ||||||||||| ||| Sbjct 2060940 CTCTTGCCTCCCCCCTGATCAACATAACGTGCAGTATCATTGAACACACGAAGCATCGGA 2060999 Query 119238 ATGATACCATCGGATTGGCCATTTGTCCCCCGAAt 119272 | ||||||| || |||||||| |||||||| Sbjct 2061000 ACAATACCATTAGACGTTCCATTTGTTCCCCGAAT 2061034 >seq1 Length=52991155 Score = 111 bits (122), Expect = 2e-19 Identities = 145/200 (73%), Gaps = 3/200 (2%) Strand=Plus/Minus Query 130034 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 130093 || ||||| || || || || || || |||||| | || ||||| | ||| ||||| Sbjct 19457500 CCTTCGTCGCGTGAAATAAGCTCGTTTGAGAAGGTTAATCCCGGCATTAAACCGCGCTTT 19457441 Query 130094 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 130153 |||||||||||||||||||| || || ||||| ||||| || || ||||| || ||| Sbjct 19457440 TTCAACCAGAAAATCGCACAGAAGCTTCCGGAGAAAAAGATTCCTTCAACACAAGCAAAC 19457381 Query 130154 GCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCCCACTGC 130213 |||| || | || ||||| || | ||| ||| | ||| ||||||||||| | Sbjct 19457380 GCAACGATTCTTTCTGCAAAAGAATCG---CTTGAATCGATCCATTTCATCGCCCAATCA 19457324 Query 130214 GCCTTTTTCTCGATACACGG 130233 || || ||| ||||||| || Sbjct 19457323 GCTTTCTTCGCGATACATGG 19457304 >seq8 Length=45569985 Score = 102 bits (112), Expect = 1e-16 Identities = 233/350 (67%), Gaps = 3/350 (1%) Strand=Plus/Plus Query 130016 GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 130075 ||||| || ||| | || ||||| || || || || || || ||||| | || Sbjct 25025573 GCAAAATCACAGTGTAAGCCTTCGTCGCGTGAAATAAGCTCGTTTGAGAAAGTTAATCCC 25025632 Query 130076 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 130135 ||||| | ||| || || |||||||||||||||||||| || || |||||||| || Sbjct 25025633 GGCATTAAACCGCGTTTTTTCAACCAGAAAATCGCACAGAAGCTTCCGGAGAAGAAAATT 25025692 Query 130136 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAAC 130195 || || ||||| ||||| |||| || | || ||||| || | ||| ||| | | Sbjct 25025693 CCTTCAACACAAGCGAAAGCAACGATTCTTTCTGCAAAAGAATCG---CTTGAATCGATC 25025749 Query 130196 CACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAG 130255 || |||| ||||| | || || || | |||||||| | || | || || | ||| Sbjct 25025750 CATTTCAAAGCCCAATCAGCTTTCTTAGCAATACACGGAATTGTGTCAATTGCGTGAAAT 25025809 Query 130256 AGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCG 130315 | | |||||||| | | ||| | || ||| | || | ||| ||||| | || Sbjct 25025810 AATCGATTCTTTTCAGCAGAATCGCTTATATACGTTTCGAGGAGAAGAGAATACATCTCT 25025869 Query 130316 CCATGGACCATTTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTC 130365 |||| ||||| || | ||| || ||||||||| |||||||| Sbjct 25025870 GAGTGGATGTTTTCAATAGCGATTTGAAACCCGTAGAAAGCACGCGCTTC 25025919 >seq2 Length=45729672 Score = 96.9 bits (106), Expect = 4e-15 Identities = 226/337 (67%), Gaps = 8/337 (2%) Strand=Plus/Minus Query 14095 GTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAA 14154 |||||| |||||| | ||| || || || ||||||| ||| || || | || || Sbjct 15379699 GTCAAGAATATCAGCCCTGTTGGTTGCTGCAATGACAATGATTCCAGTATTACCCTCGAA 15379640 Query 14155 GCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCAT 14214 |||||||| || ||||| ||||| |||| ||| ||||| | |||||| ||| | Sbjct 15379639 TCCATCCATTTCTGTCAAAAGTTGGTTGAGGGTCTGTTCTCTTTCATCGTTCCCTCC--- 15379583 Query 14215 ACCACCCGCACTGC---GTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACA 14271 |||| || ||| ||||| | || || || ||||||||||| | ||||| ||||| Sbjct 15379582 ACCAATTCCAGTGCCTCGTTGCCTTCCCACAGCATCAATTTCATCAACAAAAACAATACA 15379523 Query 14272 TGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCAC 14331 || || || ||| || || | ||| || |||| ||||| | ||| || Sbjct 15379522 AGGAGCGTTCTCTTTGGCCTTTTTGAATAAATCGCGAACTCGAGAAGCACCAATACCGAC 15379463 Query 14332 AAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTAGATTCACCCG 14390 ||||||||| ||||| | | | | | |||| || || ||||| | |||||| | Sbjct 15379462 AAACATCTCAACAAACTCAGAACCTG-AGATTGAGAAAAATGGGACACCTGCTTCACCGG 15379404 Query 14391 CGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 14427 | || || || | || |||||||| || ||||| Sbjct 15379403 CAATAGCCTTAGCTAATAGTGTCTTCCCAGTTCCTGG 15379367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618418293527720