Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq276 149 7e-31 seq8 149 7e-31 seq7 149 7e-31 seq1 143 3e-29 seq3 123 3e-23 seq2 116 4e-21 seq4 96.9 4e-15 >seq276 Length=24472 Score = 149 bits (164), Expect = 7e-31 Identities = 205/285 (72%), Gaps = 5/285 (2%) Strand=Plus/Plus Query 94672 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAA 94731 ||||| || | ||||| | ||| |||||| ||||| | | ||| | || || | Sbjct 22727 CTCATTGAAACATATATAAGCGATTCTGCTGAAAAGAATCGCTTATTTCATGCAATTGAG 22786 Query 94732 ACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCG 94791 ||| |||| ||||| || || || |||||||| ||||| ||| ||||| ||| | Sbjct 22787 ACAATTCCATGTATCGCGAAAAAGGCTGATTGGGCAATGAAATGGATTGATTCAA----G 22842 Query 94792 CG-TTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 94850 || ||| |||||||| || || | |||||||| ||||| || || || |||||||| || Sbjct 22843 CGATTCTTTTGCTGAAAGAATCGTTGCATTTGCTTGTGTAGAAGGAATTTTCTTCTCCGG 22902 Query 94851 TTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTC 94910 ||| ||||| |||| ||| | || ||||| ||| | |||||||| | ||||| Sbjct 22903 AAGCTTTTGCGCGATTTTCTGGTTGAAAAAGCGCGGTTTAATGCCAGGGTTAACATTCTC 22962 Query 94911 CAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||||||||||| || |||||||| || || ||| || ||||| Sbjct 22963 AAACGAGCTTATTTCACGTGACGAAGGTCTGCACTGTGATTTTGC 23007 >seq8 Length=45569985 Score = 149 bits (164), Expect = 7e-31 Identities = 385/577 (67%), Gaps = 11/577 (2%) Strand=Plus/Minus Query 94672 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAA 94731 ||| | || | |||||| | ||| |||||| ||||| | | ||| | || || | Sbjct 25025853 CTCCTCGAAACGTATATAAGCGATTCTGCTGAAAAGAATCGATTATTTCACGCAATTGAC 25025794 Query 94732 ACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCG 94791 ||| ||||||||||| |||||||| ||||||||| |||| ||| | ||| ||| | Sbjct 25025793 ACAATTCCGTGTATTGCTAAGAAAGCTGATTGGGCTTTGAAATGGATCGATTCAA----G 25025738 Query 94792 CG-TTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 94850 || ||| ||||| || || || | || || || |||||||| || || |||||||| || Sbjct 25025737 CGATTCTTTTGCAGAAAGAATCGTTGCTTTCGCTTGTGTTGAAGGAATTTTCTTCTCCGG 25025678 Query 94851 TTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTC 94910 |||||| || |||| ||| | || || || ||| | ||||| || | ||||| Sbjct 25025677 AAGCTTCTGTGCGATTTTCTGGTTGAAAAAACGCGGTTTAATGCCGGGATTAACTTTCTC 25025618 Query 94911 CAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCGGTGGAACTT-TTCA 94969 ||||||||||| || || ||||| || | ||| || ||||| || || | | Sbjct 25025617 AAACGAGCTTATTTCACGCGACGAAGGCTTACACTGTGATTTTGC-TTGTTTGTTATACT 25025559 Query 94970 AATTATTGCGTATTAAACCAACGACTGAGACTATTCATTCTATTGTTAAGGAAGCCGTTG 95029 |||||||| |||| | || ||| | |||||| || || |||| Sbjct 25025558 CGCTATTGCGTCAGAAACTGAGTACAGAGCGCGTGGTGAAGATTGTTCGTGATGCGGTTG 25025499 Query 95030 AGATTGAGAAAGGA-TTCATATTGGATGCCCTTCCATGCGCTCTCATCGGTATGAATTCT 95088 ||||||| || ||| || ||| || || ||||| ||||| | | || ||||| | Sbjct 25025498 AGATTGA-AAGGGAGTTTGTATGCGACGCGCTTCCTTGCGCGTTGGTTGGGATGAACGGT 25025440 Query 95089 GAAAAAATGTCTGAATATATTGAGTATGTATCTGATAGATTGTTGAAGCAGATCGG-GGT 95147 ||| ||| | | |||||||||| ||| ||||||| || ||| || | || || Sbjct 25025439 GAATTGATGAGTCAGTATATTGAGTTTGTTGCTGATAGGTTATTGGGTGAGCTTGGTTGT 25025380 Query 95148 GCCTCCAATTTGGAACTCCAAGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACGG 95207 | | ||| || ||||||||||||| | ||||| ||| || | || Sbjct 25025379 G-AGAAAGTTTATAATGTTCAGAATCCATTTGATTGGATGGATTTGATTTCGCTTCAGGG 25025321 Query 95208 GAAGACAAACTTCTTCGAAAAGAGGGTTGGGGACTAT 95244 ||| || || ||||| || ||| | |||||||| ||| Sbjct 25025320 GAAAACCAATTTCTTTGAGAAGCGCGTTGGGGAGTAT 25025284 >seq7 Length=49172423 Score = 149 bits (164), Expect = 7e-31 Identities = 205/285 (72%), Gaps = 5/285 (2%) Strand=Plus/Minus Query 94672 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAA 94731 ||||| || | ||||| | ||| |||||| ||||| | | ||| | || || | Sbjct 10197361 CTCATTGAAACATATATAAGCGATTCTGCTGAAAAGAATCGCTTATTTCATGCAATTGAG 10197302 Query 94732 ACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCG 94791 ||| |||| ||||| || || || |||||||| ||||| ||| ||||| ||| | Sbjct 10197301 ACAATTCCATGTATCGCGAAAAAGGCTGATTGGGCAATGAAATGGATTGATTCAA----G 10197246 Query 94792 CG-TTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 94850 || ||| |||||||| || || | |||||||| ||||| || || || |||||||| || Sbjct 10197245 CGATTCTTTTGCTGAAAGAATCGTTGCATTTGCTTGTGTAGAAGGAATTTTCTTCTCCGG 10197186 Query 94851 TTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTC 94910 ||| ||||| |||| ||| | || ||||| ||| | |||||||| | ||||| Sbjct 10197185 AAGCTTTTGCGCGATTTTCTGGTTGAAAAAGCGCGGTTTAATGCCAGGGTTAACATTCTC 10197126 Query 94911 CAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||||||||||| || |||||||| || || ||| || ||||| Sbjct 10197125 AAACGAGCTTATTTCACGTGACGAAGGTCTGCACTGTGATTTTGC 10197081 Score = 91.5 bits (100), Expect = 2e-13 Identities = 170/248 (69%), Gaps = 4/248 (2%) Strand=Plus/Plus Query 9556 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9615 |||||| || ||| | ||| || || || || || | || ||| || | | ||| ||| Sbjct 2726576 ATCAAGAATTTCAGGTCTATTAGTAGCAGCAATAACTATAACACCAGTATTACTATTAAA 2726635 Query 9616 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9675 ||||||||| || ||||| | || || | |||||||| | |||||||||| || Sbjct 2726636 ACCATCCATTTCAGTCAACAACTGATTCAATGTTTGTTCTCTTTCATCATTCCCTCCACC 2726695 Query 9676 ACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGG 9735 | ||||| || | || | || || ||||| ||||||||||| || || | || || Sbjct 2726696 AATACCAGTACCTCTCTGTCTCCCTACAGCATCTATCTCATCAATAAATACCAAACAAGG 2726755 Query 9736 TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTG--GCGCCCACACCAACA 9793 | |||||| || | ||| | ||| | ||| |||| || || ||||| ||| Sbjct 2726756 TGAATTTTCTTTTGCCTTATTAAACAAATCTC--TCACTCTTGAAGCACCAACACCGACA 2726813 Query 9794 AACATCTC 9801 |||||||| Sbjct 2726814 AACATCTC 2726821 >seq1 Length=52991155 Score = 143 bits (158), Expect = 3e-29 Identities = 197/274 (72%), Gaps = 5/274 (2%) Strand=Plus/Plus Query 94672 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAA 94731 ||| | || | |||||| | ||| ||||| ||||| | | ||| | || || || Sbjct 19457238 CTCCTCGAAACGTATATAAGCGATTCCGCTGAAAAGAATCGCTTATTTCATGCAATTGAA 19457297 Query 94732 ACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCG 94791 ||| |||| ||||| |||||||| |||||||| ||||| ||| | ||| ||| | Sbjct 19457298 ACAATTCCATGTATCGCGAAGAAAGCTGATTGGGCGATGAAATGGATCGATTCAA----G 19457353 Query 94792 CG-TTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 94850 || ||| ||||| || || || | || ||||| |||||||| || ||||| ||||| || Sbjct 19457354 CGATTCTTTTGCAGAAAGAATCGTTGCGTTTGCTTGTGTTGAAGGAATCTTTTTCTCCGG 19457413 Query 94851 TTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTC 94910 |||||| || |||| ||| | || ||||| ||| | ||||| || | |||||| Sbjct 19457414 AAGCTTCTGTGCGATTTTCTGGTTGAAAAAGCGCGGTTTAATGCCGGGATTAACCTTCTC 19457473 Query 94911 CAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 ||||||||||| || || ||||| ||| | ||| Sbjct 19457474 AAACGAGCTTATTTCACGCGACGAAGGATTGCAC 19457507 >seq3 Length=55515152 Score = 123 bits (136), Expect = 3e-23 Identities = 382/577 (66%), Gaps = 13/577 (2%) Strand=Plus/Minus Query 104507 ATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCC 104566 |||||||| |||||||| || |||||||| |||| |||||||| || || || | Sbjct 2061034 ATTCGGGGAACAAATGGAACGTCTAATGGTATTGTTCCGATGCTTCGTGTGTTCAATGAT 2060975 Query 104567 ACAGCGCGCTATGTAAATCAAGCTGG--GC--GTCGAAAGGGATCTATCGCAGTCTATCT 104622 || || || ||||| |||| | || || | |||||| || | || || || | Sbjct 2060974 ACTGCACGTTATGTTGATCAGGGGGGAGGCAAGAGGAAAGGTG-CTTTTGCTGTGTACTT 2060916 Query 104623 TGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGA 104682 ||||||||||| || ||||| | || ||||| || ||| | || || || | || Sbjct 2060915 GGAGCCATGGCATGCTGATATATTTGACTTCCTGGAATTGAAAATAAATCATGGAAAGGA 2060856 Query 104683 GGAGGCGCGGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGA 104741 ||| || ||| || ||| | || | ||| || ||| | || |||||||| ||| | | Sbjct 2060855 AGAGCAACG-TGCTCGAGATTTATTTTACGCCCTTTGGGTGCCTGATCTCTTTATGGAAA 2060797 Query 104742 GAGTTGAGGAGAG-TGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCC 104800 ||| | | || | ||| | ||||| || || || || | | ||||||||| | | Sbjct 2060796 GAGCTCTG-AGCGATGGGGAATGGTCCCTGTTCTGCCCCAATGAAGCACCTGGTTTGGCA 2060738 Query 104801 GATGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCG 104860 ||| |||||| || ||||| || ||||| |||| || ||| ||| || Sbjct 2060737 GATTGTTGGGGTGAAGAATTTGATAAGCTGTACACTCAGTATGAAAAAGCAGGAAAAGCA 2060678 Query 104861 ACTGCGACGGTGCCAGCTGCCGA-TGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGAC 104919 | || || | ||| | || | ||||| || ||| | ||||| || | || || Sbjct 2060677 AAAAAGATTGTTCAAGCA-CGGACTCTGTGGTTTGCAATTTTGAAGTCACAGATAGAAAC 2060619 Query 104920 TGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTT 104979 ||| | || |||||||||| || || | || || || || || || ||||| | Sbjct 2060618 TGGAAATCCTTACATGCTTTTTAAGGATACTTGCAATAGGAAAAGCAACCAGCAGAATCT 2060559 Query 104980 GGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACA-GACAAAGATG 105038 ||| || ||| || ||||| || || || || | | | |||| | | || | | Sbjct 2060558 GGGCACAATTAAGTCATCAAATCTGTGCACTGAGATAATCCAGTATACAAGTCCAACA-G 2060500 Query 105039 AGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCC 105075 |||| |||||||||||||| |||||||| || || || Sbjct 2060499 AGACTGCTGTGTGTAACCTTGCATCAATTGCACTACC 2060463 Score = 91.5 bits (100), Expect = 2e-13 Identities = 177/256 (69%), Gaps = 8/256 (3%) Strand=Plus/Minus Query 9556 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9615 |||||| | |||| | ||| || || || | ||||| || || | | | | ||| Sbjct 53796643 ATCAAGAACATCAGGTCTATTAGTAGCAGCCAAGACAATAACGCCCGAATTACCAGAAAA 53796584 Query 9616 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9675 ||||||||||| |||||||| || |||||||| ||||||| |||||||| | Sbjct 53796583 TCCATCCATCTCAGTCAAAAGCTGATTAATAGTCTGTTCCCTCTCATCATTTCCACCACC 53796524 Query 9676 ACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGG 9735 | |||||| | | || | || || ||||||||||||||||| || || ||||| || Sbjct 53796523 AAGACCAGCTCCTCTCTGTCTCCCAACAGCATCAATCTCATCAATAAACACAATGCACGG 53796464 Query 9736 TTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCCCACACCAA 9791 | |||| || || ||||| | ||||| || || || | || || || || | Sbjct 53796463 T--GCCTTCGACTTCGCCTTCTCAAACAAATCCC-TA-ACTCTAGAAGCACCAACTCCCA 53796408 Query 9792 CAAACATCTCCACAAA 9807 |||||| |||||||| Sbjct 53796407 CAAACAGTTCCACAAA 53796392 >seq2 Length=45729672 Score = 116 bits (128), Expect = 4e-21 Identities = 304/460 (66%), Gaps = 8/460 (2%) Strand=Plus/Minus Query 9557 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9616 ||||| |||||| | | || || || || ||||||| || || || | | || || Sbjct 15379698 TCAAGAATATCAGCCCTGTTGGTTGCTGCAATGACAATGATTCCAGTATTACCCTCGAAT 15379639 Query 9617 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9676 |||||||| ||||||||||||||||| | || ||||| | |||||| ||| || | Sbjct 15379638 CCATCCATTTCTGTCAAAAGTTGGTTGAGGGTCTGTTCTCTTTCATCGTTCCCT---CCA 15379582 Query 9677 CCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 9733 ||| |||| | |||||| ||||||| |||||||| ||||||| || || || || Sbjct 15379581 CCAATTCCAGTGCCTCGTTGCCTTCCCACAGCATCAATTTCATCAACAAAAACAATACAA 15379522 Query 9734 GGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACA 9793 || || || || || || | ||| || || || || || | ||| ||| Sbjct 15379521 GGAGCGTTCTCTTTGGCCTTTTTGAATAAATCGCGAACTCGAGAAGCACCAATACCGACA 15379462 Query 9794 AACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGC 9852 |||||||| ||||| | | | | | |||| || || |||||| | |||||| || Sbjct 15379461 AACATCTCAACAAACTCAGAACCTG-AGATTGAGAAAAATGGGACACCTGCTTCACCGGC 15379403 Query 9853 AATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCG 9912 ||| || || | || ||||| || || ||||| ||| ||| || | ||| Sbjct 15379402 AATAGCCTTAGCTAATAGTGTCTTCCCAGTTCCTGGGGGACCAATGAGAAGAACCCCTTT 15379343 Query 9913 TGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATTTC 9972 ||| || || ||| | || | | |||||||| | || ||||| ||||| | || Sbjct 15379342 TGGTATGCGAGCCCCAATAGCAGTGAACCTCTCAGGCTTTTTTAGAAACTCCACTACCTC 15379283 Query 9973 TTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATCG 10012 || || | ||||| | || | ||| |||||||| Sbjct 15379282 CATAAAATCCTGCTTGGCTTCATCTACCCCGGCAACATCG 15379243 >seq4 Length=56582383 Score = 96.9 bits (106), Expect = 4e-15 Identities = 210/307 (68%), Gaps = 13/307 (4%) Strand=Plus/Plus Query 9590 ACAACAAT---ACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATA 9646 |||||||| ||| || | | ||||| || ||||| ||||||||||||||||| | Sbjct 38680015 ACAACAATGACACCGGTATTACCCTCAAATCCGTCCATTTCTGTCAAAAGTTGGTTGAGG 38680074 Query 9647 GTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTTCCCACG 9703 || ||||| | ||| |||||| || |||| |||| | | ||| |||| || Sbjct 38680075 GTCTGTTCTCTTTCGTCATTCCCT---CCACCAATTCCAGTCCCTCTTTGTCTTCCAACA 38680131 Query 9704 GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAG-CGACTTCAAAGAG 9762 || ||||| ||||||| ||||| ||||| || ||| || || | ||| || || Sbjct 38680132 GCGTCAATTTCATCAACAAAGACAATGCAAGGAGCATTCTCTTTAGCCTTCTTGAACAAG 38680191 Query 9763 ATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACA 9822 || || ||||| || || | ||||||||||||||| ||||| | | | | | | Sbjct 38680192 -TCACGGACACGAGAAGCACCAATACCAACAAACATCTCAACAAACTCAGAACCTG-ATA 38680249 Query 9823 TTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 9881 | | || || || ||| || |||||| ||||| || ||| | | |||||| || | Sbjct 38680250 TAGAGAAAAACGGAACACCAGCTTCACCAGCAATAGCCTTGGCTAACAAAGTCTTTCCAG 38680309 Query 9882 TACCTGG 9888 | ||||| Sbjct 38680310 TTCCTGG 38680316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583244855107880