Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq1 113 5e-20 seq432 105 7e-18 >seq1 Length=52991155 Score = 113 bits (124), Expect = 5e-20 Identities = 134/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 59931 AAAGCAGAATGGGCCATGCAGTGGATGAGTCCTGGAGCATCATTTGCACAACGTCTCATA 59990 ||||| || ||||| ||| | ||||| | | | | || |||||| || | || | Sbjct 19457319 AAAGCTGATTGGGCGATGAAATGGATCGATTCAAGCGATTCTTTTGCAGAAAGAATCGTT 19457378 Query 59991 GCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTC 60050 || ||||| || || ||||||||||| ||||| || |||||||| ||||||||| | Sbjct 19457379 GCGTTTGCTTGTGTTGAAGGAATCTTTTTCTCCGGAAGCTTCTGTGCGATTTTCTGGTTG 19457438 Query 60051 AAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAG 60110 |||||||| || | |||||||| | | ||||| |||||||| ||||| || ||||| Sbjct 19457439 AAAAAGCGCGGTTTAATGCCGGGATTAACCTTCTCAAACGAGCTTATTTCACGCGACGAA 19457498 Query 60111 GG 60112 || Sbjct 19457499 GG 19457500 >seq432 Length=15493 Score = 105 bits (116), Expect = 7e-18 Identities = 279/422 (66%), Gaps = 12/422 (3%) Strand=Plus/Plus Query 79380 CTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCG---GCAACGCATCTC 79436 || |||||| |||||||| ||||| |||||| | |||| | || |||| || Sbjct 7273 CTTCATGAACAGGTCCGGAATCCAGTTCGCCGTGTTCATGTCGTGCGTGCGACGCCGATC 7332 Query 79437 CTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTC 79496 ||| ||| ||| |||| ||||||||| ||| ||||||| ||||| | ||| Sbjct 7333 ATCG---CCCGTATTCTTGCGCAACTCGAGAAACTCCTCGATGTCGAGATGCCATGTCTC 7389 Query 79497 CAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGT 79556 ||||| | || | |||||| ||||| ||||| ||| ||||| |||||| Sbjct 7390 GAGATATGCGCAGACAGCACCCTTTCGCTTCCCGCC---CTGATTGACTGCGACGGCCGT 7446 Query 79557 GTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGAT 79616 | ||| | || || | ||||||||||| | || ||||||||| || ||||| Sbjct 7447 ATCGTTCACGACCTTCAGGAACGGCACGATGCCTTGGGACTTGCCGTTCGTGCCTTTGAT 7506 Query 79617 TCGTGTACCGCTCGCCCGAATGTTCGAGCAGTGGATTCCGATGCCCCCGGACCACTTGGA 79676 | | ||| || || | ||||| |||| | |||| || |||| | || || Sbjct 7507 ATGCGATCCGAGGGCGCGCACGTTCGTCCAGTCATTGCCGAGCCCGCCGGCGAATTTCGA 7566 Query 79677 GATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGC 79736 | | ||| |||||||||| ||||||||||| |||| || |||||| || | Sbjct 7567 TAGCAGAGCGTTGTCCTTGAGCGAATCGTAGATGCCTTCGA--GA-TCGTCCGACACCGT 7623 Query 79737 GACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGT 79796 ||| ||||| ||||| ||| || | || |||| |||||| || || ||||| Sbjct 7624 TGTGAGGTAGCAGGACGACAACTGCGGTCGGCGGGTTCCGGAGTTGAACAGTGTTGGCGT 7683 Query 79797 CG 79798 || Sbjct 7684 CG 7685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548509804703280