Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq432 95.1 1e-14 seq1 87.8 2e-12 seq7 86.0 7e-12 seq6 86.0 7e-12 seq5 86.0 7e-12 seq4 86.0 7e-12 seq3 86.0 7e-12 seq2 86.0 7e-12 >seq432 Length=15493 Score = 95.1 bits (104), Expect = 1e-14 Identities = 271/414 (65%), Gaps = 6/414 (1%) Strand=Plus/Minus Query 53285 ACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTG 53344 |||||||| ||||||||| | || || | || ||| ||||| ||||| ||| Sbjct 7683 ACGCCAACACTGTTCAACTCCGGAACCCGCCGACCGCAGTTGTCGTCCTGCTACCTCACA 7624 Query 53345 GCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATC 53404 || || ||| || || |||| ||||||||||| |||||||||| || | | Sbjct 7623 ACGGTGTCGGACGA-TC--TCGAAGGCATCTACGATTCGCTCAAGGACAACGCTCTGCTA 7567 Query 53405 TCCAAGTGGTCGGGTGGTATCGGTATCCACTGCTCGAACGTCCGTGCGAACGGCACACCA 53464 || || | | || || |||| | |||| ||||||| || || ||| | | Sbjct 7566 TCGAAATTCGCCGGCGGGCTCGGCAATGACTGGACGAACGTGCGCGCCCTCGGATCGCAT 7507 Query 53465 ATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAAC 53524 ||||| || ||||||||| || | || |||||||| | || ||| | ||| | Sbjct 7506 ATCAAAGGCACGAACGGCAAGTCCCAAGGCATCGTGCCGTTCCTGAAGGTCGTGAACGAT 7447 Query 53525 ACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTC 53584 |||||| ||||| ||||| || |||||| ||||| | || | || ||| Sbjct 7446 ACGGCCGTCGCAGTCAATCAGGGCGG---GAAGCGAAAGGGTGCTGTCTGCGCATATCTC 7390 Query 53585 GAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAA 53644 ||| | ||||| |||||| ||||||||||||| |||| |||| ||| || || Sbjct 7389 GAGACATGGCATCTCGACATCGAGGAGTTTCTCGAGTTGCGCAAGAATACGGGCGATGAT 7330 Query 53645 GAGATGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATG 53698 | ||| | ||| || || || |||||||||||||| |||||| Sbjct 7329 CGGCGTCGCACGCACGACATGAACACGGCGAACTGGATTCCGGACCTGTTCATG 7276 >seq1 Length=52991155 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79624 CTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAA 79682 |||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 37306432 CTGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAA 37306373 Query 79683 TTGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 37306372 CTGAGCTATGAAAGC 37306358 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 5242661 TGCTCTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 5242602 Query 79684 TGAGCTACGAAAGC 79697 |||||||||| ||| Sbjct 5242601 TGAGCTACGAGAGC 5242588 >seq7 Length=49172423 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 37587447 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 37587506 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 37587507 TGAGCTATGAAAGC 37587520 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 46135218 TGCTCTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 46135159 Query 79684 TGAGCTACGAAAGC 79697 |||||||||| ||| Sbjct 46135158 TGAGCTACGAGAGC 46135145 >seq6 Length=35275713 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 8001403 TGCTCTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 8001344 Query 79684 TGAGCTACGAAAGC 79697 |||||||||| ||| Sbjct 8001343 TGAGCTACGAGAGC 8001330 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 20473489 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 20473548 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 20473549 TGAGCTATGAAAGC 20473562 >seq5 Length=43630510 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 1554842 TGCTCTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 1554783 Query 79684 TGAGCTACGAAAGC 79697 |||||||||| ||| Sbjct 1554782 TGAGCTACGAGAGC 1554769 >seq4 Length=56582383 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 36280337 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 36280278 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 36280277 TGAGCTATGAAAGC 36280264 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| |||| |||| |||||||||||||||||| |||||||| ||||| Sbjct 50091357 TGCTCTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACAGGTGCTCTAACCAAC 50091298 Query 79684 TGAGCTACGAAAGCA 79698 |||||||||| |||| Sbjct 50091297 TGAGCTACGAGAGCA 50091283 >seq3 Length=55515152 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 3861151 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 3861210 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 3861211 TGAGCTATGAAAGC 3861224 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 35189037 TGCTCTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 35188978 Query 79684 TGAGCTACGAAAGC 79697 |||||||||| ||| Sbjct 35188977 TGAGCTACGAGAGC 35188964 >seq2 Length=45729672 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 4639994 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 4640053 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 4640054 TGAGCTATGAAAGC 4640067 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 9483990 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 9484049 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 9484050 TGAGCTATGAAAGC 9484063 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 13467436 TGCTCTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 13467495 Query 79684 TGAGCTACGAAAGC 79697 |||||||||| ||| Sbjct 13467496 TGAGCTACGAGAGC 13467509 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 34099141 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 34099082 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 34099081 TGAGCTATGAAAGC 34099068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547201040482600