Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_028667.1 Length=39593 Score E Sequences producing significant alignments: (Bits) Value seq1870 140 8e-29 seq1663 134 3e-27 seq1401 114 3e-21 seq1420 113 1e-20 >seq1870 Length=1289 Score = 140 bits (154), Expect = 8e-29 Identities = 516/800 (65%), Gaps = 29/800 (4%) Strand=Plus/Minus Query 6240 GATACGTCGTATTCGGCGCCGCGGAACGGCACCCGCAGCCGGGCAGAAACCTTGCGTTTC 6299 || ||||||||||| |||| ||||||| ||| |||||| | | ||||| || | Sbjct 1124 GACACGTCGTATTCCTCGCCACGGAACGACACGCGCAGCTTCGGCGTGACCTTTCGGCTT 1065 Query 6300 TCCGGTGCGGCAATGGCCAGTTCGCGC--ATCGTCTCTGCAGGCGGTGCAATGCGCAGTT 6357 ||||| ||||| | ||||| || || | |||| || | ||| || || ||||| Sbjct 1064 TCCGGGGCGGCGACCGCCAGCTCCCGGCAAACGTCGA-GC-GACGGGGCTTTGATCAGTT 1007 Query 6358 GCTCAGGCTTGATCGTCATCCAGGCCGCGTAGCGAGTGCGGTGATGTCGGGTGTGGATGG 6417 ||| | | || |||||| ||| | || || | ||||||| | || | Sbjct 1006 GCTGGGCGGTAATGCGCATCCACGCCTCACTACGCGTAGCGCCATGTCGGCTATGCGTTT 947 Query 6418 CGGTGGCGTTGTAGTGCCGCATCCAGCGTCCGGCCAGCCCGTTGATCTCGTCCAGAGTG- 6476 |||| |||||| ||||| |||||| || ||| |||| | |||||| || || Sbjct 946 CGGTTGCGTTGAAGTGCATACGCCAGCGCTTTGCAAGCGCGTTCAGCTCGTCGAGGCTGG 887 Query 6477 -CGCGGTTTCTGCATCAGTTGCAGGCCACTTTCAAACTCACGCTCGACGATGTTGTGGGC 6535 | | | || | | | ||| || || ||| |||| ||||||| || ||| | || Sbjct 886 TCACCGGTT--GGAAC--TTG-AGACCCGGTTCGAACTTGCGCTCGATGAGGTTCCGTGC 832 Query 6536 CTGCTCGACCTGGCCCTTGGCGCGTGCGTTACCGACTTTGTTGATGATCAGTTCGATGCC 6595 | || ||||| || ||||||||||||| ||||| |||| | |||||| ||||| || Sbjct 831 GTTTTCCACCTGTCCGGTGGCGCGTGCGTTGCCGACCTTGTGCACGATCAGCTCGATACC 772 Query 6596 CAGGGCGCGACACAGGTTGCGGAACATCGAGGAGGTCATGGCCGCACCGGGGTCGGTCAT 6655 || | || |||||||||||| ||| |||| || | |||| || | ||| ||| Sbjct 771 GAGCGACCGGCACAGGTTGCGGGTCATGGAGGCCGTGTTCGCCGAGCCCGCGTCAAGCAT 712 Query 6656 GATCATGAAGGGCACGCCATGGAACGGGTCGGTATCACCACGCTTGACCATCGCGCTGAT 6715 | ||| ||||| ||||| | | | |||| | |||| || | ||| || | || Sbjct 711 CAGAATGCGCGGCACCCCATGCAGCAGATCGGCACCACCGCGTTCCTGCATTGCATTAAT 652 Query 6716 CAGTACATGGCAGAGGTTCTCCGCGCTTTCAGCGCCGAGCACGTAATGCACGTACAGGGT 6775 ||| |||||||| || | || ||||| | |||||| | ||| | Sbjct 651 GAGTGTCGAACAGAGGTTTTCGCCCGACTCCGCGCCCATCACGTACTCGGTGTATATCCA 592 Query 6776 ACCGCTGGTGTGGTCCGTGATGACGTAACGCCATAGGCGCTGTTTCTCGATGCGCTTGAG 6835 |||| | |||||| | ||| |||| | ||| | ||| | |||| || ||| Sbjct 591 GTCGCTCGCGTGGTCGGAGATTTCGTAGCTCCACACGCGATCGGCTGCGATCCGTGCGAG 532 Query 6836 ATTCTCTGGCTTGCCGTCGTAGAACTCGGCCTTATTCATGGCGCG-----CG-------C 6883 |||| |||||| | |||||||||||| | || ||| | || || Sbjct 531 GTTCTTCGGCTTGTTCTTGTAGAACTCGGCGTGATCCATCACACGAAGTCCGTTTGCACG 472 Query 6884 GCCGTCA----TTGGC--CAGGTAGAACTGAGTGGAGATCGAGGCGTCGATCTGCCAGAC 6937 | ||||| | ||| ||||||| || | | | | |||||||||||||| || Sbjct 471 GGCGTCAGCAGTCGGCTTCAGGTAGTACAGCACGCACAGGCTCGCGTCGATCTGCCATAC 412 Query 6938 GTGGTTGGGATGCAGACTGACCAACTCGACCGCTGGGGCCGGGCGCAGTAGTTGCTCAGG 6997 ||| || |||||||| || ||| |||| | | |||||||| || | || || || Sbjct 411 GTGATTCGGATGCAGGCTCGCCAGCTCGGTCACCGGGGCCGGTGCAAGCAACTGGTCGGG 352 Query 6998 GTGCAAGCCATAGGCACGCA 7017 ||||| ||| || | |||| Sbjct 351 GTGCACGCCGTACGTGCGCA 332 >seq1663 Length=1510 Score = 134 bits (148), Expect = 3e-27 Identities = 465/719 (65%), Gaps = 35/719 (5%) Strand=Plus/Minus Query 6341 CGGTGCAATGCGCAGTTGCTCAGGCTTGATCGTCATCCAGGCCGCGTAGCGAGTGCGGTG 6400 ||| || | ||| || || || | | ||||||||||||| |||| |||| ||||| Sbjct 866 CGGCGCGACGCGGAGCTGGTCGGCCGTGATCGTCATCCACTGCGCGAAGCGGGTGCGTCC 807 Query 6401 ATGTCGGGTGTGGATGGCGGTGGCGTTGTAGTGCCGCATCCAGCGTCCGGCCAGCCCGTT 6460 || || | || | | | ||||||| || ||| || | || | |||| Sbjct 806 GTGGCGTGAATGCACCTTGTTTTCGTTGTACCAGCGAGCCCAACGGCGCGCGTTCGCGTT 747 Query 6461 GATCTCGTCCAGAGTGCGCGGTTTCTGCATCAGTTGCAGGCCACTTTCAAACTCACGCTC 6520 | ||||||||| |||| ||| | | ||| |||||| || || || || Sbjct 746 CAGCTCGTCCAGGTCGCGCACGCACTGAAGC--TTG-AGGCCAGGCTCGAAGGAGCGTTC 690 Query 6521 GACGATGTTGTGGGCCTGCTCGACCTGGCCCTTGGCGCGTGCGTTACCGACTTTGTTGAT 6580 || ||||| | | |||| ||||||||| || | || || || || ||||| || Sbjct 689 GATGATGTCGCGAGCCTTCTCGACCTGACCAGTCGCACGCGCATTGCCGACCGCGTGCGG 630 Query 6581 GATCAGTTCGATGCCCAGGGCGCGACAC---AGGTTGCGGAACATCGAGGAGGTCATGGC 6637 || ||| | || |||| |||| | ||||| ||||| | | ||| |||| Sbjct 629 GAGCAGCTGGACCTGCAGG---CGACGCGCGAGGTTCGCGAACAGCCCGCTGGTGTTGGC 573 Query 6638 CGCACCGGGGTCGGTCATGATCATGAAGGGCACGCCATGGAACGGGTCGGTATCACCACG 6697 ||| ||| |||||| || |||||||||| |||||| ||| || || || Sbjct 572 GCTACCCATGTCCATCATGAGGATCTGCGGCACGCCATAGAACGGCTCG---TCTCCGCG 516 Query 6698 CTTGACCATCGCGCTGATCA-GTACATGGCAGAGGTTCTCCGCGCTTTCAGCGCCGAGCA 6756 || ||||| | ||| | | || || |||||| |||| || |||||||||| Sbjct 515 CTGCTGGATCGCACCGATGAAGGACTCTGC-GAGGTTGGTGCCGCTCTCCGCGCCGAGCA 457 Query 6757 CGTAATGCACGTACAGGGTACCGCTGGTGTGGTCCGTGATGACGTAACGCCATAGGCGCT 6816 |||| || ||||| | | |||||| ||||||| |||| |||| ||| | ||| | Sbjct 456 CGTACTGGACGTAGATCGCGCCGCTGTTGTGGTCGGTGACCTCGTACGACCAGACGCGGT 397 Query 6817 GTTTCTCGATGCGCTTGAGATTCTCTGGCTTGCCGTCGTAGAAC---TCGGCCTTATTCA 6873 |||||||| || || || || | |||||| | ||||||| ||| || ||| Sbjct 396 CGTTCTCGATCCGTTTCAGGTTGCCCGGCTTGTTCTTGTAGAACCGGTCGCGCTCCATCA 337 Query 6874 T----------GGCGCGCGCGCCGT-----CATTGGCCAGGTAGAACTGAGTGGAGATCG 6918 | | ||||| | || | ||| |||||| || | | | | | Sbjct 336 CCTGCAGACCCGTCTCGCGCTCGGTACGTGCGTTG---AGGTAGTACAGGACGCACAAGG 280 Query 6919 AGGCGTCGATCTGCCAGACGTGGTTGGGATGCAGACTGACCAACTCGACCGCTGGGGCCG 6978 | |||||||||||||||||||| || || ||||| ||| || |||| ||| || |||| Sbjct 279 ACGCGTCGATCTGCCAGACGTGATTCGGGTGCAGGCTGCGCAGCTCGGTCGCGGGCGCCG 220 Query 6979 GGCGCAGTAGTTGCTCAGGGTGCAAGCCATAGGCACGCAAGGCCCGGCCTATAGCGCTG 7037 ||||||| || || || ||||||||||| ||| ||| | || || | || |||||| Sbjct 219 GGCGCAGCAGCTGATCCGGGTGCAAGCCGTAGTGACGTAGCGCACGCGCGATCGCGCTG 161 >seq1401 Length=1891 Score = 114 bits (126), Expect = 3e-21 Identities = 264/389 (68%), Gaps = 14/389 (4%) Strand=Plus/Minus Query 2420 GTACTGGTCGGTGTCCCCGACCCGCTCCTGGATACGCACGTACGCCTTGGTGCTCACGAC 2479 ||||| |||| |||| |||| ||||| | | |||||||||| |||| ||| | | Sbjct 725 GTACTCGTCGCTGTCGCCGATGCGCTCGTACAGCCGCACGTACGGCTTGCTGC-CGGTAA 667 Query 2480 CTGGACAGCC-TCGCCGATGGCCTGCATTGCACGCTGCCAACGTTCGTCATCGATCTGCA 2538 | || || || ||| |||| |||||| || ||| | || | ||||| Sbjct 666 CGCGAATGCTGTCCGAGATCGCCTCCATTGCCGTCTTCCACTTGGCATCCTTGATCTCGT 607 Query 2539 GGCGGCGCAGGGCAAGCACGCTGCCGGTACGGATGTT-CCCTGCTTGGTCCACGCGGAAC 2597 |||||||||| | ||||||| ||| || | ||| |||| |||| || || ||||| Sbjct 606 AGCGGCGCAGGCCGAGCACGCGGCCCGTGTTCACGTTGCCCTCCTTG-TCGACCTGGAAC 548 Query 2598 GCATCGTTGATCAG---CGTGATGACCTCCGCGCGAGCGCCTTCTGTCCATTCGTGGAGG 2654 || ||||||| ||| | ||| | || || ||| | | ||||||| || | Sbjct 547 GCTTCGTTGACCAGAACCTTGAGGTTGTCGTTGCT---GCCCTGCGACCATTCGACGATG 491 Query 2655 CACTCGTCGATCAACGCCTTGGCCGCCTGCAGGCGCTCGTCGAAGGCGATGTTGTCGGCC 2714 |||| |||||||| | |||||||||||||| ||||| |||| ||| ||||| Sbjct 490 CACTGGTCGATCAGTTCTTTGGCCGCCTGCAGCTGCTCGCCGAACTGGATCCGCTCGGCG 431 Query 2715 ATGGCCCGAATGACCTTGTAGCGACCGTCGAAGCTGACCAGGGAGGCGTTGCCCTTCTTG 2774 || || | |||||||||||| |||||| | || || | | ||||||||| || Sbjct 430 ATCTGTCGCACGACCTTGTAGCGGCCGTCGTATGACACGAGCGTGATGTTGCCCTTGGTG 371 Query 2775 CCACCTACCTT--CGCCTGGTACTGCTCG 2801 || || | ||| |||| |||||||||| Sbjct 370 CCGCCGATCTTGACGCC--GTACTGCTCG 344 >seq1420 Length=1851 Score = 113 bits (124), Expect = 1e-20 Identities = 217/313 (69%), Gaps = 8/313 (3%) Strand=Plus/Minus Query 2397 GCGATATCAAGAGGAATGGAGCGGTACTGGTCGGTGTCCCCGACCCGCTCCTGGATACGC 2456 ||||| || || ||||| ||| ||||| ||||| ||||| ||||| | || || Sbjct 348 GCGATGTCGAGCGGAATCTGTACGTATTGGTCCGTGTCGCCGACGCGCTCGTAGACGCGG 289 Query 2457 ACGTACGCCTTGGTGCTCACGACCTGGACAGCCTCGCCGATGGCCTGCATTGCACGCTGC 2516 ||||| | |||| ||| | ||||| | || |||||||| ||| |||| || | || Sbjct 288 ACGTATGACTTGCTGCCGATCACCTGCAGGGCTTCGCCGATCGCCCGCATCGCTTCCAGC 229 Query 2517 CAACGTTCGTCATCGATCTGCAGGCGGCGCAGGGCAAGCACGCTGCCGGTACGGATGTTC 2576 || || || ||| | || || ||||| || ||||||| |||||| ||| | Sbjct 228 CAGCGCGGATCGGTGATGTCCAATCGACGCAGCGCGAGCACGCGGCCGGTGTTGATTTGG 169 Query 2577 CCTGCTTGGTCCA-CGCGGAACGCAT-CGTT--GATCAGCGTGATGACCTCCGCGCGAGC 2632 ||| | | ||| ||| ||||| | ||| |||| || ||| | ||| | ||| || Sbjct 168 CCTTCCTTGTCGGTCGCA-AACGCCTGCGTCACGATC-GCCTGA--ATCTCAGGGCGGGC 113 Query 2633 GCCTTCTGTCCATTCGTGGAGGCACTCGTCGATCAACGCCTTGGCCGCCTGCAGGCGCTC 2692 | ||||| ||| | || ||||||||||||| | ||||||||||||||||| || Sbjct 112 ATCCAGAGTCCAGTCGCGAAGACACTCGTCGATCATGGATTTGGCCGCCTGCAGGCGTTC 53 Query 2693 GTCGAAGGCGATG 2705 ||||| |||||| Sbjct 52 ATCGAACGCGATG 40 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126572712742170