Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Medicago_20truncatula_20[refseq_20GCF_5F000219495.3_202014-06-18] 2,187 sequences; 412,924,424 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq4 96.9 2e-15 seq7 87.8 1e-12 seq8 84.2 2e-11 >seq4 Length=56582383 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||||||||| ||||||||||| || ||||| | || || || ||| | Sbjct 36294555 ATGCAGATTTTTGTGAAGACTCTTACTGGCAAGACAATTACTTTGGAGGTAGAGAGCTCG 36294614 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | || || ||||| || || || ||| ||||| || ||| |||| || | Sbjct 36294615 GACACAATTGACAAT--GTGAAGGCCAAGATACAAGACAAGGAGGGTATTCCCCCAGACC 36294672 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| |||| |||||||| ||||| ||| | || |||| || | || | ||||| | Sbjct 36294673 AGCAAAGGTTGATTTTTGCTGGAAAGCAACTTGAAGACGGTCGAACTCTGGCTGATTATA 36294732 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 | ||||| |||||| ||| | ||| | || ||||| | ||||| || Sbjct 36294733 ATATCCAGAAAGAGTCGACTCTTCATCTTGTCTTGCGGCTTCGTGGTGG 36294781 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| |||||||| || ||||||||||| |||||| | || || |||||| | Sbjct 31259796 ATGCAAATATTTGTGAAGACACTTACTGGGAAGACTATTACCTTGGAGGTGGAAAGCTCT 31259737 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | || || | ||| || ||| ||| ||| || || || ||| |||| || | Sbjct 31259736 GATACTATTGATAAT--GTGAAAGCAAAGATACAAGATAAGGAGGGTATTCCCCCAGATC 31259679 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | |||||||| || || || ||||| || | || | || | ||||||| Sbjct 31259678 AGCAGAGGCTTATTTTTGCTGGCAAGCAGTTGGAGGATGGTCGTACTCTGGCAGATTACA 31259619 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 | || || ||||| || ||||| | ||| | ||| | ||||| ||| Sbjct 31259618 ATATTCAGAAAGAATCTACCCTGCATCTTGTTCTTCGTCTCCGTGGTGGC 31259569 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| |||||||| || || |||||||| || || || | || || || || | Sbjct 31260024 ATGCAGATTTTTGTTAAGACCCTTACTGGAAAGACCATAACTTTGGAGGTTGAGAGTTCT 31259965 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | ||| || || |||||| || ||||| || |||| || | Sbjct 31259964 GATACAATTGATAAT--GTGAAGGCAAAAATTCAGGATAAAGAGGGCATTCCTCCTGACC 31259907 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| | |||||||||| ||||| || ||||| || | || | ||| ||||||| | Sbjct 31259906 AGCAGAGACTAATTTTTGCTGGAAAGCAGTTGGAGGATGGTCGTACTTTGGCCGATTATA 31259847 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 | ||||| || || |||||||||||||||||| | | ||||| ||| Sbjct 31259846 ATATCCAGAAGGAATCTACTTTGCATTTGGTTTTGAGGCTTCGTGGTGGC 31259797 Score = 86.0 bits (94), Expect = 4e-12 Identities = 136/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||||||||| | ||||| ||| ||| || | || || || || | Sbjct 31288443 ATGCAAATCTTTGTGAAAACATTGACTGGCAAAACTATCACCCTCGAGGTGGAGAGTTCT 31288384 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || |||| || ||| || || ||||| |||||| |||| || | Sbjct 31288383 GATACCATAGACAAC--GTTAAAGCTAAGATTCAAGACAAGGAAGGTATTCCTCCCGATC 31288326 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| || | || ||||| || ||||||||||| || | |||| | | | ||||||| Sbjct 31288325 AGCAAAGGCTTATATTTGCTGGTAAACAATTGGAAGATGGCCGCACCCTTGCGGATTACA 31288266 Query 27968 ACATCCAAAAAGA 27980 |||||||||| || Sbjct 31288265 ACATCCAAAAGGA 31288253 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| |||||||| || ||| | ||||| || |||||| | || || || || | Sbjct 31287988 AATGCAGATTTTTGTAAAGACTTTGACTGGAAAGACTATTACTTTGGAGGTGGAGAGTTC 31287929 Query 27849 CGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 || | || | ||| || ||| || || || || || ||| | || || Sbjct 31287928 AGATACTATTGATAAT--GTGAAAGCTAAGATTCAAGATAAGGAGGGTATCCCTCCAGAT 31287871 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGATTA 27965 ||||| || | || || ||||| || |||||||| |||| |||| ||| | | ||||| Sbjct 31287870 CAGCAGAGGCTTATCTTCGCCGGTAAGCAATTGGAAGACGGGCGCACGCTCG-CTGATTA 31287812 Query 27966 CAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||| ||||| ||| ||| | |||||||||||||| | ||||| || Sbjct 31287811 CAACATTCAAAAGGAGTCCACCCTTCATTTGGTTTTGCGGCTTCGTGGTGG 31287761 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/217 (69%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| |||||||| ||||| ||||| || || || |||| || || ||| | Sbjct 36294099 ATGCAAATATTTGTGAAGACTCTCACTGGAAAGACAATCACCCTTGAGGTGGAGAGCTCT 36294158 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || ||||| || || || ||| |||||||||||| |||| || | Sbjct 36294159 GATACCATTGACAAT--GTTAAGGCCAAGATACAGGACAAAGAAGGTATTCCACCAGACC 36294216 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || ||||| |||||||| | || || | | | |||| | || |||| Sbjct 36294217 AGCAGAGGCTCATCTTTGCTGGAAAACAGCTTGAAGATGGCAGAACCTTGGCTGACTACA 36294276 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCG 28004 ||||||| || ||| ||| | ||| | || ||||| Sbjct 36294277 ACATCCAGAAGGAGTCAACTCTCCATCTTGTGTTGCG 36294313 >seq7 Length=49172423 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| |||||||| ||||| || || || || || |||| || || ||| || Sbjct 47989622 ATGCAAATCTTTGTGAAGACTCTCACAGGAAAGACAATCACCCTTGAGGTGGAGAGCTCC 47989681 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || ||||| || || || || ||||| ||||| | || || | Sbjct 47989682 GATACAATTGACAAT--GTTAAGGCCAAGATTCAAGACAAGGAAGGGATCCCTCCAGACC 47989739 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || ||||||||||||| || || |||| |||| || | | | | ||||||| Sbjct 47989740 AGCAGCGTCTAATTTTTGCCGGCAAGCAGCTGGAAGACGGGCGTACCCTTGCAGATTACA 47989799 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| ||| ||| | || ||||| | ||| | ||||| || Sbjct 47989800 ACATCCAAAAGGAGTCCACACTCCACTTGGTGCTCCGTCTTCGTGGTGG 47989848 >seq8 Length=45569985 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/217 (69%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| |||||||| ||||| ||||| || ||||| |||| || || ||| | Sbjct 6167941 ATGCAAATATTTGTGAAGACTCTCACTGGAAAGACGATTACCCTTGAGGTGGAGAGCTCT 6168000 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || ||||| || || || ||| |||||||| ||| | || || | Sbjct 6168001 GATACCATTGACAAT--GTTAAGGCCAAGATACAAGACAAAGAGGGTATCCCACCAGACC 6168058 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || ||||| |||||||| | || || | | | |||| | ||||||| Sbjct 6168059 AGCAGAGGCTCATCTTTGCTGGAAAACAGCTTGAAGATGGCAGAACCTTGGCTGATTACA 6168118 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCG 28004 ||||||| || ||| ||| | ||| | || ||||| Sbjct 6168119 ACATCCAGAAGGAGTCAACTCTCCATCTTGTGTTGCG 6168155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355852914821349